Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46602 * 2 1 4 4 C 1.52996 * 109.47193 * 239.99985 * 2 1 3 5 5 N 1.46904 * 109.47199 * 64.99830 * 4 2 1 6 6 C 1.46901 * 111.00057 * 75.89192 * 5 4 2 7 7 C 1.46897 * 110.99872 * 199.84610 * 5 4 2 8 8 C 1.53004 * 109.47101 * 86.74398 * 7 5 4 9 9 C 1.52997 * 109.47244 * 294.34975 * 8 7 5 10 10 C 1.53003 * 109.46943 * 54.34560 * 8 7 5 11 11 C 1.53000 * 109.47189 * 174.34536 * 8 7 5 12 12 C 1.50694 * 109.46890 * 179.97438 * 11 8 7 13 13 H 1.07998 * 120.00727 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00134 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99506 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00349 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46881 * 119.99978 * 16 14 12 19 19 H 1.48500 * 109.47274 * 239.99531 * 16 14 12 20 20 C 1.50698 * 109.47068 * 119.99753 * 2 1 3 21 21 C 1.38232 * 120.00382 * 59.73032 * 20 2 1 22 22 C 1.38232 * 120.00706 * 179.78862 * 21 20 2 23 23 C 1.38236 * 119.99426 * 0.43795 * 22 21 20 24 24 C 1.38238 * 120.00156 * 359.81564 * 23 22 21 25 25 C 1.38231 * 119.99991 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47268 * 299.99965 * 1 2 3 27 27 H 1.08997 * 109.47689 * 60.00346 * 1 2 3 28 28 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46955 * 185.00120 * 4 2 1 30 30 H 1.08997 * 109.46879 * 304.99731 * 4 2 1 31 31 H 1.09005 * 109.46894 * 63.97033 * 6 5 4 32 32 H 1.08999 * 109.47252 * 183.97539 * 6 5 4 33 33 H 1.09002 * 109.47175 * 303.97847 * 6 5 4 34 34 H 1.09002 * 109.47035 * 206.74310 * 7 5 4 35 35 H 1.09003 * 109.47135 * 326.74464 * 7 5 4 36 36 H 1.09006 * 109.47268 * 70.69417 * 9 8 7 37 37 H 1.08994 * 109.47334 * 190.69639 * 9 8 7 38 38 H 1.08999 * 109.47245 * 310.69911 * 9 8 7 39 39 H 1.09000 * 109.46800 * 65.07290 * 10 8 7 40 40 H 1.09003 * 109.46973 * 185.06326 * 10 8 7 41 41 H 1.08991 * 109.47284 * 305.07124 * 10 8 7 42 42 H 1.08991 * 109.47423 * 300.00451 * 11 8 7 43 43 H 1.09007 * 109.46624 * 60.00171 * 11 8 7 44 44 H 0.96999 * 120.00010 * 180.02562 * 15 14 12 45 45 H 1.08007 * 119.99570 * 359.97438 * 21 20 2 46 46 H 1.07991 * 120.00600 * 180.27622 * 22 21 20 47 47 H 1.08003 * 120.00005 * 179.84029 * 23 22 21 48 48 H 1.07999 * 120.00132 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6513 0.0374 -2.4456 6 6 2.4991 1.2252 -2.6143 7 6 1.6910 -0.8120 -3.6435 8 6 0.3527 -1.5371 -3.7990 9 6 0.1624 -2.5117 -2.6351 10 6 -0.7848 -0.5139 -3.7986 11 6 0.3422 -2.3108 -5.1190 12 6 -0.9756 -3.0254 -5.2718 13 1 -1.7305 -2.9365 -4.5045 14 6 -1.2179 -3.7931 -6.3913 15 7 -0.2985 -3.9019 -7.3254 16 14 -2.8518 -4.6784 -6.5811 17 1 -3.7075 -4.3966 -5.4007 18 1 -3.5327 -4.2021 -7.8118 19 1 -2.6137 -6.1407 -6.6816 20 6 2.0323 -0.7103 1.2305 21 6 1.6938 -2.0321 1.4522 22 6 2.1581 -2.6851 2.5786 23 6 2.9536 -2.0134 3.4881 24 6 3.2878 -0.6901 3.2691 25 6 2.8270 -0.0385 2.1404 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 3.5292 0.9145 -2.7888 32 1 2.1454 1.8061 -3.4661 33 1 2.4517 1.8363 -1.7129 34 1 1.8731 -0.1930 -4.5220 35 1 2.4917 -1.5447 -3.5429 36 1 -0.0201 -1.9513 -1.7181 37 1 -0.6891 -3.1605 -2.8399 38 1 1.0609 -3.1176 -2.5178 39 1 -0.6999 0.1242 -4.6782 40 1 -1.7421 -1.0348 -3.8188 41 1 -0.7229 0.0978 -2.8986 42 1 0.4778 -1.6165 -5.9481 43 1 1.1527 -3.0398 -5.1192 44 1 -0.4690 -4.4416 -8.1132 45 1 1.0689 -2.5556 0.7437 46 1 1.8973 -3.7190 2.7495 47 1 3.3143 -2.5228 4.3695 48 1 3.9096 -0.1655 3.9794 49 1 3.0885 0.9953 1.9691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093009143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = 8.870470 kcal Electronic energy + Delta-G solvation = -23900.036147 eV Core-core repulsion = 20826.242506 eV Total energy + Delta-G solvation = -3073.793641 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.74260 -38.30267 -35.53813 -33.74100 -32.12790 -30.98967 -29.46498 -27.45477 -26.98099 -26.23560 -25.92220 -24.10756 -22.88651 -22.55986 -21.29603 -19.65137 -17.92815 -16.87871 -16.16713 -15.73936 -15.33960 -15.02618 -14.71622 -14.34431 -14.31691 -13.61164 -13.34124 -13.27087 -13.18904 -12.96297 -12.67047 -12.55997 -12.10045 -11.96808 -11.84598 -11.66592 -11.46975 -11.25738 -11.15052 -10.93558 -10.81812 -10.70565 -10.56316 -10.50405 -10.23701 -10.23075 -9.86536 -9.56261 -8.99497 -8.89237 -8.82258 -8.71644 -8.28736 -7.90132 -5.93317 -3.92834 1.29315 1.32683 3.34165 3.42086 3.45672 3.71018 4.20386 4.51880 4.72502 4.82378 4.92821 5.02252 5.11401 5.30357 5.41788 5.42494 5.45780 5.47568 5.50577 5.58631 5.69717 5.83706 5.89263 5.94712 5.96591 6.02051 6.07127 6.09200 6.12120 6.23170 6.32657 6.36941 6.39189 6.42667 6.49581 6.63465 6.66873 6.80038 6.87175 6.92496 6.94313 7.28341 7.31230 7.33152 7.44472 7.54180 7.75335 7.91035 8.07766 8.52917 9.13053 9.69759 11.18465 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.003670 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.094348 B = 7628.156209 C = 8325.270068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 H 0.073 0.927 4 C 0.048 3.952 5 N -0.532 5.532 6 C 0.024 3.976 7 C 0.065 3.935 8 C -0.050 4.050 9 C -0.137 4.137 10 C -0.115 4.115 11 C 0.032 3.968 12 C -0.503 4.503 13 H 0.060 0.940 14 C 0.053 3.947 15 N -0.898 5.898 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.069 4.069 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.257 0.743 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 8.189 18.845 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 H 0.091 0.909 4 C -0.080 4.080 5 N -0.255 5.255 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.051 4.051 9 C -0.193 4.193 10 C -0.172 4.172 11 C -0.005 4.005 12 C -0.541 4.541 13 H 0.078 0.922 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.070 4.070 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.067 0.933 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.208 8.273 18.729 21.396 hybrid contribution 0.157 -0.872 -0.384 0.966 sum 6.365 7.401 18.346 20.781 Atomic orbital electron populations 1.21795 0.93460 1.02191 1.01822 1.20136 0.96968 0.98552 0.90790 0.90897 1.22557 0.97451 0.98812 0.89205 1.61931 1.52465 1.07866 1.03217 1.22428 0.94523 0.93742 1.01737 1.22338 0.98295 0.94886 0.90721 1.20539 0.92351 0.94604 0.97598 1.22037 1.01209 0.98765 0.97327 1.21594 0.98097 0.97715 0.99790 1.19143 0.96948 0.94329 0.90095 1.21281 1.00664 1.27964 1.04232 0.92216 1.25021 0.96497 0.96964 0.96190 1.69981 1.33586 1.40768 1.09513 0.86626 0.84466 0.79484 0.77979 1.19755 1.21204 1.21239 1.19995 0.96658 0.94275 0.96071 1.21116 0.99906 0.94435 0.97580 1.21169 0.97953 0.99876 0.94644 1.21109 0.99262 0.94941 0.99529 1.21098 1.00247 0.95015 0.97629 1.21064 0.98396 0.99773 0.94616 0.93784 0.90521 0.92574 0.95494 0.88657 0.96354 0.91573 0.92074 0.91769 0.95020 0.93418 0.91740 0.94696 0.94516 0.93190 0.93243 0.96845 0.97078 0.93287 0.85778 0.86178 0.86465 0.86433 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.31 37.16 0.31 -1.31 16 2 C -0.05 -0.53 2.62 -91.78 -0.24 -0.77 16 3 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 4 C 0.05 0.63 3.37 -3.82 -0.01 0.62 16 5 N -0.53 -7.61 2.88 -242.91 -0.70 -8.31 16 6 C 0.02 0.30 9.25 60.07 0.56 0.85 16 7 C 0.06 1.12 4.24 -3.82 -0.02 1.10 16 8 C -0.05 -1.00 0.61 -154.51 -0.09 -1.09 16 9 C -0.14 -2.53 6.81 37.16 0.25 -2.28 16 10 C -0.11 -2.20 7.97 37.16 0.30 -1.90 16 11 C 0.03 0.81 4.04 -27.89 -0.11 0.70 16 12 C -0.50 -13.75 7.56 -34.44 -0.26 -14.02 16 13 H 0.06 1.60 5.75 -52.49 -0.30 1.29 16 14 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 C -0.07 -0.79 4.78 -104.62 -0.50 -1.29 16 21 C -0.11 -1.29 8.76 -39.59 -0.35 -1.64 16 22 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.25 9.67 -39.58 -0.38 -1.64 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.00 6.56 -51.93 -0.34 0.66 16 28 H 0.06 0.70 6.13 -51.93 -0.32 0.38 16 29 H 0.03 0.37 8.00 -51.93 -0.42 -0.05 16 30 H 0.10 1.37 3.71 -51.93 -0.19 1.18 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.06 0.66 6.70 -51.93 -0.35 0.31 16 34 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 35 H 0.03 0.56 7.79 -51.93 -0.40 0.16 16 36 H 0.05 0.77 4.44 -51.93 -0.23 0.53 16 37 H 0.06 1.33 6.34 -51.93 -0.33 1.00 16 38 H 0.03 0.63 7.55 -51.93 -0.39 0.24 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 1.02 6.79 -51.93 -0.35 0.67 16 41 H 0.05 0.84 6.09 -51.93 -0.32 0.53 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 1.42 7.16 -52.48 -0.38 1.04 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -29.35 366.99 -9.70 -39.05 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.41 Total: -0.60 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -1.84 Total: -26.08 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.04 Total: -34.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.35 -9.70 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093009143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds