Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46602 * 2 1 4 4 C 1.52996 * 109.47193 * 239.99985 * 2 1 3 5 5 N 1.46904 * 109.47199 * 64.99830 * 4 2 1 6 6 C 1.46901 * 111.00057 * 75.89192 * 5 4 2 7 7 C 1.46897 * 110.99872 * 199.84610 * 5 4 2 8 8 C 1.53004 * 109.47101 * 86.74398 * 7 5 4 9 9 C 1.52997 * 109.47244 * 294.34975 * 8 7 5 10 10 C 1.53003 * 109.46943 * 54.34560 * 8 7 5 11 11 C 1.53000 * 109.47189 * 174.34536 * 8 7 5 12 12 C 1.50694 * 109.46890 * 179.97438 * 11 8 7 13 13 H 1.07998 * 120.00727 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00134 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99506 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00349 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46881 * 119.99978 * 16 14 12 19 19 H 1.48500 * 109.47274 * 239.99531 * 16 14 12 20 20 C 1.50698 * 109.47068 * 119.99753 * 2 1 3 21 21 C 1.38232 * 120.00382 * 59.73032 * 20 2 1 22 22 C 1.38232 * 120.00706 * 179.78862 * 21 20 2 23 23 C 1.38236 * 119.99426 * 0.43795 * 22 21 20 24 24 C 1.38238 * 120.00156 * 359.81564 * 23 22 21 25 25 C 1.38231 * 119.99991 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47268 * 299.99965 * 1 2 3 27 27 H 1.08997 * 109.47689 * 60.00346 * 1 2 3 28 28 H 1.09005 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46955 * 185.00120 * 4 2 1 30 30 H 1.08997 * 109.46879 * 304.99731 * 4 2 1 31 31 H 1.09005 * 109.46894 * 63.97033 * 6 5 4 32 32 H 1.08999 * 109.47252 * 183.97539 * 6 5 4 33 33 H 1.09002 * 109.47175 * 303.97847 * 6 5 4 34 34 H 1.09002 * 109.47035 * 206.74310 * 7 5 4 35 35 H 1.09003 * 109.47135 * 326.74464 * 7 5 4 36 36 H 1.09006 * 109.47268 * 70.69417 * 9 8 7 37 37 H 1.08994 * 109.47334 * 190.69639 * 9 8 7 38 38 H 1.08999 * 109.47245 * 310.69911 * 9 8 7 39 39 H 1.09000 * 109.46800 * 65.07290 * 10 8 7 40 40 H 1.09003 * 109.46973 * 185.06326 * 10 8 7 41 41 H 1.08991 * 109.47284 * 305.07124 * 10 8 7 42 42 H 1.08991 * 109.47423 * 300.00451 * 11 8 7 43 43 H 1.09007 * 109.46624 * 60.00171 * 11 8 7 44 44 H 0.96999 * 120.00010 * 180.02562 * 15 14 12 45 45 H 1.08007 * 119.99570 * 359.97438 * 21 20 2 46 46 H 1.07991 * 120.00600 * 180.27622 * 22 21 20 47 47 H 1.08003 * 120.00005 * 179.84029 * 23 22 21 48 48 H 1.07999 * 120.00132 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6513 0.0374 -2.4456 6 6 2.4991 1.2252 -2.6143 7 6 1.6910 -0.8120 -3.6435 8 6 0.3527 -1.5371 -3.7990 9 6 0.1624 -2.5117 -2.6351 10 6 -0.7848 -0.5139 -3.7986 11 6 0.3422 -2.3108 -5.1190 12 6 -0.9756 -3.0254 -5.2718 13 1 -1.7305 -2.9365 -4.5045 14 6 -1.2179 -3.7931 -6.3913 15 7 -0.2985 -3.9019 -7.3254 16 14 -2.8518 -4.6784 -6.5811 17 1 -3.7075 -4.3966 -5.4007 18 1 -3.5327 -4.2021 -7.8118 19 1 -2.6137 -6.1407 -6.6816 20 6 2.0323 -0.7103 1.2305 21 6 1.6938 -2.0321 1.4522 22 6 2.1581 -2.6851 2.5786 23 6 2.9536 -2.0134 3.4881 24 6 3.2878 -0.6901 3.2691 25 6 2.8270 -0.0385 2.1404 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 3.5292 0.9145 -2.7888 32 1 2.1454 1.8061 -3.4661 33 1 2.4517 1.8363 -1.7129 34 1 1.8731 -0.1930 -4.5220 35 1 2.4917 -1.5447 -3.5429 36 1 -0.0201 -1.9513 -1.7181 37 1 -0.6891 -3.1605 -2.8399 38 1 1.0609 -3.1176 -2.5178 39 1 -0.6999 0.1242 -4.6782 40 1 -1.7421 -1.0348 -3.8188 41 1 -0.7229 0.0978 -2.8986 42 1 0.4778 -1.6165 -5.9481 43 1 1.1527 -3.0398 -5.1192 44 1 -0.4690 -4.4416 -8.1132 45 1 1.0689 -2.5556 0.7437 46 1 1.8973 -3.7190 2.7495 47 1 3.3143 -2.5228 4.3695 48 1 3.9096 -0.1655 3.9794 49 1 3.0885 0.9953 1.9691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093009143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = -4.261877 kcal Electronic energy + Delta-G solvation = -23900.605608 eV Core-core repulsion = 20826.242506 eV Total energy + Delta-G solvation = -3074.363102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66183 -39.52118 -36.94859 -34.93861 -34.08680 -31.74146 -30.31454 -29.25195 -28.38863 -27.65581 -27.27240 -25.54340 -24.26010 -23.41754 -22.45602 -20.58826 -19.54915 -18.29140 -17.70376 -16.84171 -16.55872 -16.25780 -16.00089 -15.70319 -15.36576 -14.77300 -14.62180 -14.58806 -14.26898 -14.05038 -14.04785 -13.72645 -13.66439 -13.43809 -12.98879 -12.83256 -12.74558 -12.66530 -12.47388 -12.38363 -12.32021 -12.14772 -11.99181 -11.88845 -11.80166 -11.49036 -11.33950 -11.21374 -10.80793 -10.53725 -10.49414 -9.75861 -9.54400 -9.10708 -8.12725 -6.19154 0.51677 0.56167 1.40199 1.41293 1.53543 2.44501 2.90382 3.09879 3.21215 3.86437 3.95126 4.12149 4.19222 4.22700 4.24541 4.34709 4.38182 4.45902 4.51951 4.60001 4.64104 4.69012 4.71963 4.80813 4.84203 4.90461 4.94863 5.04457 5.05750 5.12522 5.14999 5.18949 5.23339 5.26532 5.27254 5.40211 5.47390 5.56710 5.59742 5.63983 5.66621 5.69238 5.77523 5.84695 5.91466 5.96125 6.17587 6.19610 6.29715 6.41150 6.96290 7.47930 8.99866 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.003670 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.094348 B = 7628.156209 C = 8325.270068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 H 0.084 0.916 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.024 3.976 7 C 0.075 3.925 8 C -0.047 4.047 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.040 3.960 12 C -0.510 4.510 13 H 0.065 0.935 14 C -0.005 4.005 15 N -0.939 5.939 16 Si 0.955 3.045 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.083 4.083 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.074 0.926 42 H -0.016 1.016 43 H -0.020 1.020 44 H 0.259 0.741 45 H 0.116 0.884 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 9.167 21.280 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.054 4.054 3 H 0.102 0.898 4 C -0.077 4.077 5 N -0.254 5.254 6 C -0.124 4.124 7 C -0.053 4.053 8 C -0.047 4.047 9 C -0.183 4.183 10 C -0.161 4.161 11 C 0.002 3.998 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.202 4.202 15 N -0.580 5.580 16 Si 0.780 3.220 17 H -0.184 1.184 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.083 4.083 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.002 0.998 43 H -0.001 1.001 44 H 0.068 0.932 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.159 0.841 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.017 9.262 21.184 23.890 hybrid contribution 0.288 -1.163 -1.091 1.620 sum 6.305 8.099 20.093 22.563 Atomic orbital electron populations 1.21745 0.93752 1.01618 1.01812 1.20021 0.96586 0.98818 0.89943 0.89799 1.22524 0.97286 0.98360 0.89512 1.61877 1.53460 1.07889 1.02156 1.22494 0.94151 0.92821 1.02954 1.22057 0.96200 0.94873 0.92146 1.20404 0.94414 0.94815 0.95100 1.21936 1.00144 0.98303 0.97885 1.21492 0.96735 0.97329 1.00568 1.19024 0.95172 0.93402 0.92196 1.21642 1.01394 1.27590 1.04148 0.91653 1.25914 1.00200 0.98028 0.96013 1.70120 1.35813 1.41898 1.10207 0.85545 0.80075 0.78098 0.78262 1.18438 1.20845 1.20861 1.20007 0.97578 0.94363 0.96361 1.21192 1.00578 0.94860 0.98156 1.21403 0.98152 1.00647 0.94567 1.21437 0.98602 0.95213 0.99952 1.21436 1.00019 0.95133 0.97732 1.21309 0.98013 1.00603 0.94628 0.92733 0.91491 0.93405 0.95700 0.90019 0.96159 0.91477 0.89858 0.92418 0.95932 0.90675 0.93961 0.94823 0.95473 0.94736 0.90676 0.99810 1.00127 0.93232 0.86549 0.85032 0.84311 0.84087 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.31 71.98 0.60 -2.31 16 2 C -0.03 -0.74 2.62 -11.54 -0.03 -0.77 16 3 H 0.08 1.60 6.47 -2.39 -0.02 1.58 16 4 C 0.05 1.29 3.37 86.30 0.29 1.58 16 5 N -0.53 -14.50 2.88 -922.43 -2.66 -17.16 16 6 C 0.02 0.54 9.25 127.69 1.18 1.72 16 7 C 0.08 2.61 4.24 86.31 0.37 2.98 16 8 C -0.05 -1.88 0.61 -52.18 -0.03 -1.91 16 9 C -0.13 -4.69 6.81 71.98 0.49 -4.20 16 10 C -0.10 -3.96 7.97 71.98 0.57 -3.39 16 11 C 0.04 2.08 4.04 29.85 0.12 2.20 16 12 C -0.51 -28.50 7.56 25.60 0.19 -28.31 16 13 H 0.07 3.52 5.75 -2.91 -0.02 3.51 16 14 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 15 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 16 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C -0.08 -1.74 4.78 -19.87 -0.09 -1.83 16 21 C -0.13 -2.85 8.76 22.27 0.20 -2.65 16 22 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 24 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.13 -2.33 9.67 22.27 0.22 -2.11 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.60 6.56 -2.39 -0.02 1.58 16 28 H 0.05 1.12 6.13 -2.38 -0.01 1.10 16 29 H 0.02 0.65 8.00 -2.39 -0.02 0.63 16 30 H 0.08 2.30 3.71 -2.39 -0.01 2.29 16 31 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 33 H 0.08 1.53 6.70 -2.39 -0.02 1.52 16 34 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16 35 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 36 H 0.07 2.37 4.44 -2.38 -0.01 2.36 16 37 H 0.04 1.74 6.34 -2.39 -0.02 1.73 16 38 H 0.03 1.23 7.55 -2.39 -0.02 1.21 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.03 1.39 6.79 -2.39 -0.02 1.38 16 41 H 0.07 2.46 6.09 -2.39 -0.01 2.44 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.12 2.63 7.16 -2.91 -0.02 2.61 16 46 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 47 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 49 H 0.13 1.94 7.95 -2.91 -0.02 1.92 16 Total: -1.00 -64.08 366.99 5.76 -58.32 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.90 Total: 14.55 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 5.20 Total: -44.98 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -2.37 Total: -74.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.08 5.76 -58.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093009143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.060 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds