Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47038 * 2 1 4 4 C 1.50707 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99694 * 89.99878 * 4 3 2 6 6 C 1.38242 * 119.99945 * 179.97438 * 5 4 3 7 7 C 1.38233 * 119.99837 * 359.95899 * 6 5 4 8 8 C 1.50696 * 119.99726 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47417 * 20.00226 * 8 7 6 10 10 N 1.46904 * 109.47103 * 140.00148 * 8 7 6 11 11 C 1.46902 * 110.99919 * 274.72592 * 10 8 7 12 12 C 1.52999 * 109.47137 * 185.15544 * 11 10 8 13 13 C 1.50703 * 109.46931 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99602 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00336 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47164 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47180 * 119.99914 * 17 15 13 20 20 H 1.48507 * 109.47235 * 239.99899 * 17 15 13 21 21 C 1.52992 * 109.47392 * 259.99802 * 8 7 6 22 22 C 1.53001 * 109.47713 * 174.47680 * 21 8 7 23 23 C 1.53001 * 109.47527 * 294.47788 * 21 8 7 24 24 C 1.38236 * 119.99808 * 0.27395 * 7 6 5 25 25 C 1.38231 * 120.00040 * 269.97779 * 4 3 2 26 26 H 1.09001 * 109.47320 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.47033 * 60.00364 * 1 2 3 28 28 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47077 * 239.99536 * 2 1 3 30 30 H 1.08996 * 109.46849 * 120.00120 * 2 1 3 31 31 H 1.08998 * 109.47640 * 60.00589 * 3 2 1 32 32 H 1.08996 * 109.47399 * 299.99784 * 3 2 1 33 33 H 1.08005 * 120.00462 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.99834 * 179.97438 * 6 5 4 35 35 H 1.00903 * 110.99782 * 38.67502 * 10 8 7 36 36 H 1.09003 * 109.47042 * 305.15492 * 11 10 8 37 37 H 1.09002 * 109.47284 * 65.15216 * 11 10 8 38 38 H 1.09003 * 109.47112 * 299.99904 * 12 11 10 39 39 H 1.09002 * 109.47302 * 59.99683 * 12 11 10 40 40 H 0.96999 * 119.99554 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.47273 * 54.47452 * 21 8 7 42 42 H 1.08998 * 109.46566 * 55.52652 * 22 21 8 43 43 H 1.08995 * 109.47354 * 175.53551 * 22 21 8 44 44 H 1.08999 * 109.46634 * 295.53183 * 22 21 8 45 45 H 1.09005 * 109.47250 * 59.99507 * 23 21 8 46 46 H 1.08996 * 109.47720 * 179.97438 * 23 21 8 47 47 H 1.09004 * 109.47053 * 300.00309 * 23 21 8 48 48 H 1.08001 * 119.99795 * 179.72967 * 24 7 6 49 49 H 1.07995 * 120.00008 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2386 1.4422 -1.1963 6 6 5.6210 1.4427 -1.1957 7 6 6.3117 1.4443 0.0017 8 6 7.8187 1.4443 0.0022 9 1 8.1824 1.7945 -0.9637 10 7 8.3080 2.3360 1.0622 11 6 8.3771 3.7256 0.5909 12 6 9.0095 4.6009 1.6748 13 6 9.0810 6.0264 1.1911 14 1 8.7126 6.2823 0.2087 15 6 9.6177 7.0035 2.0023 16 7 10.0667 6.6917 3.1985 17 14 9.7069 8.7703 1.4025 18 1 9.1405 8.8572 0.0325 19 1 8.9281 9.6435 2.3169 20 1 11.1238 9.2148 1.3810 21 6 8.3286 0.0242 0.2548 22 6 9.8524 -0.0024 0.1191 23 6 7.9347 -0.4158 1.6663 24 6 5.6200 1.4397 1.1985 25 6 4.2377 1.4431 1.1980 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6990 1.4416 -2.1318 34 1 6.1614 1.4421 -2.1308 35 1 7.7348 2.2628 1.8894 36 1 8.9834 3.7727 -0.3137 37 1 7.3716 4.0861 0.3736 38 1 8.4033 4.5538 2.5795 39 1 10.0150 4.2405 1.8922 40 1 10.4446 7.3792 3.7691 41 1 7.8870 -0.6555 -0.4740 42 1 10.2899 0.7347 0.7923 43 1 10.2228 -0.9947 0.3763 44 1 10.1297 0.2338 -0.9082 45 1 6.8491 -0.3969 1.7631 46 1 8.2976 -1.4277 1.8461 47 1 8.3762 0.2639 2.3952 48 1 6.1597 1.4365 2.1341 49 1 3.6973 1.4431 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096982038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = -14.475093 kcal Electronic energy + Delta-G solvation = -23071.740319 eV Core-core repulsion = 19996.934339 eV Total energy + Delta-G solvation = -3074.805980 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95224 -37.47892 -34.92574 -34.10327 -32.44678 -31.18133 -30.88389 -28.96288 -26.99340 -26.84202 -24.73352 -23.64395 -22.45386 -21.92416 -20.67538 -20.42499 -19.23230 -16.69666 -16.29369 -15.77140 -15.31198 -15.00449 -14.69789 -14.39845 -14.28404 -14.02378 -13.79200 -13.34292 -13.27235 -13.12238 -12.78513 -12.53258 -12.24471 -12.14884 -11.98897 -11.78844 -11.59789 -11.41476 -11.23095 -11.08883 -10.98917 -10.92394 -10.76259 -10.63651 -10.54480 -10.47232 -10.37211 -9.92553 -9.33604 -9.10279 -8.80674 -8.40022 -8.31489 -7.77854 -5.97123 -3.99090 1.41366 1.49427 3.32640 3.39939 3.44234 3.80848 4.45867 4.61058 4.69491 4.78424 4.84612 4.89934 4.98103 5.07274 5.21461 5.24934 5.29646 5.32425 5.39002 5.43572 5.52200 5.58741 5.61625 5.67101 5.76348 5.82708 5.91656 5.93459 5.96853 6.04890 6.10215 6.13971 6.18044 6.21419 6.32674 6.38040 6.47629 6.51093 6.57166 6.66143 6.70918 6.76197 7.04160 7.09716 7.53393 7.77277 7.85356 8.00048 8.12370 8.47616 9.08502 9.64493 11.14334 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003714 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.937210 B = 7536.707972 C = 8976.317432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.079 4.079 4 C -0.091 4.091 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.102 4.102 8 C 0.126 3.874 9 H 0.080 0.920 10 N -0.676 5.676 11 C 0.066 3.934 12 C 0.028 3.972 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.074 4.074 22 C -0.140 4.140 23 C -0.153 4.153 24 C -0.110 4.110 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.336 0.664 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.024 0.976 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.124 0.876 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -16.389 -6.686 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.136 4.136 6 C -0.131 4.131 7 C -0.103 4.103 8 C 0.015 3.985 9 H 0.099 0.901 10 N -0.306 5.306 11 C -0.062 4.062 12 C -0.010 4.010 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.093 4.093 22 C -0.198 4.198 23 C -0.210 4.210 24 C -0.128 4.128 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.142 0.858 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.168 -16.424 -6.651 22.077 hybrid contribution -0.897 1.350 -0.310 1.650 sum -14.065 -15.075 -6.961 21.761 Atomic orbital electron populations 1.21795 0.95837 1.01572 1.01833 1.21501 0.95467 0.96263 1.02318 1.20607 0.91178 0.97141 1.02733 1.19807 0.95351 1.00687 0.93258 1.20951 0.94129 1.01227 0.97276 1.21017 0.94044 1.00485 0.97577 1.20804 0.97627 0.98706 0.93210 1.20675 0.87071 0.94038 0.96697 0.90139 1.60821 1.55536 1.08277 1.06015 1.22176 0.98204 0.85734 1.00059 1.19035 0.96398 0.92727 0.92809 1.21222 1.39949 0.93147 1.01444 0.92816 1.24996 0.95507 0.98930 0.94944 1.69988 1.41342 1.33278 1.08680 0.86558 0.77669 0.85065 0.78833 1.19793 1.21057 1.21001 1.21006 0.96433 0.94552 0.97347 1.21746 0.94884 1.01362 1.01778 1.21958 1.01106 1.00676 0.97255 1.21013 0.94047 0.99819 0.97949 1.20966 0.94097 1.00845 0.97383 0.92690 0.92763 0.92783 0.91976 0.91897 0.91150 0.91250 0.86582 0.86382 0.84455 0.92521 0.96665 0.96963 0.95714 0.93109 0.92124 0.90626 0.93714 0.93574 0.92752 0.93469 0.91398 0.85801 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.08 -0.74 5.34 -27.88 -0.15 -0.89 16 4 C -0.09 -1.07 5.13 -104.62 -0.54 -1.60 16 5 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 6 C -0.11 -1.47 9.67 -39.58 -0.38 -1.85 16 7 C -0.10 -1.42 4.65 -104.63 -0.49 -1.91 16 8 C 0.13 1.84 1.99 -68.87 -0.14 1.70 16 9 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 10 N -0.68 -11.81 4.94 -107.95 -0.53 -12.34 16 11 C 0.07 1.41 5.45 -3.82 -0.02 1.39 16 12 C 0.03 0.73 5.28 -27.88 -0.15 0.58 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.07 -0.95 2.73 -90.62 -0.25 -1.20 16 22 C -0.14 -1.82 9.14 37.16 0.34 -1.48 16 23 C -0.15 -1.87 7.98 37.16 0.30 -1.57 16 24 C -0.11 -1.50 7.11 -39.58 -0.28 -1.78 16 25 C -0.11 -1.44 9.70 -39.58 -0.38 -1.82 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 35 H 0.34 5.76 5.64 -39.29 -0.22 5.54 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.14 7.65 -51.93 -0.40 0.75 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.65 5.55 -51.93 -0.29 0.36 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 48 H 0.12 1.65 5.57 -52.49 -0.29 1.36 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -30.12 384.43 -10.84 -40.96 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.09 Total: 2.78 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.72 Total: -27.70 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.20 Total: -38.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.12 -10.84 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096982038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.488 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds