Wall clock time and date at job start Tue Mar 31 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47038 * 2 1 4 4 C 1.50707 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99694 * 89.99878 * 4 3 2 6 6 C 1.38242 * 119.99945 * 179.97438 * 5 4 3 7 7 C 1.38233 * 119.99837 * 359.95899 * 6 5 4 8 8 C 1.50696 * 119.99726 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47417 * 20.00226 * 8 7 6 10 10 N 1.46904 * 109.47103 * 140.00148 * 8 7 6 11 11 C 1.46902 * 110.99919 * 274.72592 * 10 8 7 12 12 C 1.52999 * 109.47137 * 185.15544 * 11 10 8 13 13 C 1.50703 * 109.46931 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99602 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00336 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47164 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47180 * 119.99914 * 17 15 13 20 20 H 1.48507 * 109.47235 * 239.99899 * 17 15 13 21 21 C 1.52992 * 109.47392 * 259.99802 * 8 7 6 22 22 C 1.53001 * 109.47713 * 174.47680 * 21 8 7 23 23 C 1.53001 * 109.47527 * 294.47788 * 21 8 7 24 24 C 1.38236 * 119.99808 * 0.27395 * 7 6 5 25 25 C 1.38231 * 120.00040 * 269.97779 * 4 3 2 26 26 H 1.09001 * 109.47320 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.47033 * 60.00364 * 1 2 3 28 28 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47077 * 239.99536 * 2 1 3 30 30 H 1.08996 * 109.46849 * 120.00120 * 2 1 3 31 31 H 1.08998 * 109.47640 * 60.00589 * 3 2 1 32 32 H 1.08996 * 109.47399 * 299.99784 * 3 2 1 33 33 H 1.08005 * 120.00462 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.99834 * 179.97438 * 6 5 4 35 35 H 1.00903 * 110.99782 * 38.67502 * 10 8 7 36 36 H 1.09003 * 109.47042 * 305.15492 * 11 10 8 37 37 H 1.09002 * 109.47284 * 65.15216 * 11 10 8 38 38 H 1.09003 * 109.47112 * 299.99904 * 12 11 10 39 39 H 1.09002 * 109.47302 * 59.99683 * 12 11 10 40 40 H 0.96999 * 119.99554 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.47273 * 54.47452 * 21 8 7 42 42 H 1.08998 * 109.46566 * 55.52652 * 22 21 8 43 43 H 1.08995 * 109.47354 * 175.53551 * 22 21 8 44 44 H 1.08999 * 109.46634 * 295.53183 * 22 21 8 45 45 H 1.09005 * 109.47250 * 59.99507 * 23 21 8 46 46 H 1.08996 * 109.47720 * 179.97438 * 23 21 8 47 47 H 1.09004 * 109.47053 * 300.00309 * 23 21 8 48 48 H 1.08001 * 119.99795 * 179.72967 * 24 7 6 49 49 H 1.07995 * 120.00008 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2386 1.4422 -1.1963 6 6 5.6210 1.4427 -1.1957 7 6 6.3117 1.4443 0.0017 8 6 7.8187 1.4443 0.0022 9 1 8.1824 1.7945 -0.9637 10 7 8.3080 2.3360 1.0622 11 6 8.3771 3.7256 0.5909 12 6 9.0095 4.6009 1.6748 13 6 9.0810 6.0264 1.1911 14 1 8.7126 6.2823 0.2087 15 6 9.6177 7.0035 2.0023 16 7 10.0667 6.6917 3.1985 17 14 9.7069 8.7703 1.4025 18 1 9.1405 8.8572 0.0325 19 1 8.9281 9.6435 2.3169 20 1 11.1238 9.2148 1.3810 21 6 8.3286 0.0242 0.2548 22 6 9.8524 -0.0024 0.1191 23 6 7.9347 -0.4158 1.6663 24 6 5.6200 1.4397 1.1985 25 6 4.2377 1.4431 1.1980 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6990 1.4416 -2.1318 34 1 6.1614 1.4421 -2.1308 35 1 7.7348 2.2628 1.8894 36 1 8.9834 3.7727 -0.3137 37 1 7.3716 4.0861 0.3736 38 1 8.4033 4.5538 2.5795 39 1 10.0150 4.2405 1.8922 40 1 10.4446 7.3792 3.7691 41 1 7.8870 -0.6555 -0.4740 42 1 10.2899 0.7347 0.7923 43 1 10.2228 -0.9947 0.3763 44 1 10.1297 0.2338 -0.9082 45 1 6.8491 -0.3969 1.7631 46 1 8.2976 -1.4277 1.8461 47 1 8.3762 0.2639 2.3952 48 1 6.1597 1.4365 2.1341 49 1 3.6973 1.4431 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096982038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:01 Heat of formation + Delta-G solvation = -28.298562 kcal Electronic energy + Delta-G solvation = -23072.339750 eV Core-core repulsion = 19996.934339 eV Total energy + Delta-G solvation = -3075.405411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99291 -38.58521 -36.03534 -35.56081 -34.27927 -32.20250 -31.88862 -30.63114 -28.04854 -27.92801 -26.21209 -25.07735 -23.53231 -22.71913 -22.31885 -21.50776 -20.37119 -18.49982 -17.78480 -16.80128 -16.55214 -16.27740 -16.03181 -15.68883 -15.36258 -15.20993 -14.70484 -14.50881 -14.43549 -14.22714 -14.10399 -13.94860 -13.57537 -13.26788 -13.01200 -12.89565 -12.87513 -12.75599 -12.54371 -12.49244 -12.21575 -12.04766 -12.01177 -11.83626 -11.71559 -11.58967 -11.48301 -11.38659 -11.33662 -11.12273 -10.57149 -9.79465 -9.41603 -9.21426 -8.20651 -6.31790 0.42767 0.50933 1.38947 1.39374 1.52737 2.39770 2.82890 3.12614 3.38002 3.71870 3.87904 3.92829 4.08666 4.12454 4.18180 4.24322 4.27491 4.38038 4.50526 4.52579 4.56859 4.62438 4.67520 4.76113 4.83458 4.88120 4.92246 4.95157 5.02256 5.07327 5.08563 5.13254 5.15949 5.16253 5.26565 5.29628 5.30935 5.43617 5.45827 5.49979 5.54115 5.63284 5.65564 5.70230 5.73911 5.82139 6.13022 6.16843 6.31499 6.54923 6.85470 7.37245 8.91630 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.003714 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.937210 B = 7536.707972 C = 8976.317432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.077 4.077 4 C -0.091 4.091 5 C -0.122 4.122 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.129 3.871 9 H 0.075 0.925 10 N -0.676 5.676 11 C 0.089 3.911 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.057 0.943 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.069 4.069 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.125 4.125 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.337 0.663 36 H 0.056 0.944 37 H 0.009 0.991 38 H -0.012 1.012 39 H -0.005 1.005 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.119 0.881 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 -16.644 -8.140 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.114 4.114 4 C -0.091 4.091 5 C -0.139 4.139 6 C -0.140 4.140 7 C -0.119 4.119 8 C 0.019 3.981 9 H 0.093 0.907 10 N -0.307 5.307 11 C -0.040 4.040 12 C -0.001 4.001 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.088 4.088 22 C -0.195 4.195 23 C -0.206 4.206 24 C -0.141 4.141 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.006 0.994 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.137 0.863 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.640 -16.701 -8.113 23.645 hybrid contribution -0.471 1.369 0.163 1.457 sum -15.111 -15.331 -7.950 22.948 Atomic orbital electron populations 1.21779 0.94747 1.02138 1.02178 1.21459 0.96367 0.95308 1.02039 1.20649 0.89421 0.98059 1.03322 1.20130 0.96760 0.99336 0.92877 1.21242 0.93873 1.00483 0.98345 1.21228 0.94782 1.00364 0.97629 1.20725 0.96972 1.00264 0.93905 1.20679 0.87962 0.94251 0.95190 0.90654 1.60731 1.56438 1.06478 1.07032 1.21726 0.97071 0.87141 0.98015 1.18864 0.94626 0.93196 0.93380 1.21625 1.40239 0.94477 1.01766 0.92490 1.25957 0.94833 1.03901 0.94983 1.70117 1.41951 1.35041 1.09972 0.85398 0.77995 0.78939 0.78698 1.18702 1.20275 1.20223 1.20992 0.96246 0.93517 0.98071 1.21710 0.94926 1.01509 1.01348 1.21907 1.01197 1.01026 0.96425 1.21071 0.94758 1.00586 0.97730 1.21193 0.93789 1.00812 0.98504 0.92519 0.92263 0.92147 0.92042 0.92417 0.90869 0.90366 0.84411 0.85212 0.84323 0.92589 0.97306 0.99406 0.98632 0.92752 0.90513 0.93287 0.92013 0.93162 0.92489 0.92008 0.93073 0.86332 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 3 C -0.08 -1.28 5.34 29.85 0.16 -1.12 16 4 C -0.09 -1.99 5.13 -19.86 -0.10 -2.09 16 5 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 6 C -0.12 -3.00 9.67 22.27 0.22 -2.79 16 7 C -0.12 -3.22 4.65 -19.87 -0.09 -3.31 16 8 C 0.13 3.76 1.99 44.16 0.09 3.85 16 9 H 0.08 2.26 7.57 -2.39 -0.02 2.24 16 10 N -0.68 -24.30 4.94 -495.46 -2.45 -26.75 16 11 C 0.09 3.91 5.45 86.30 0.47 4.38 16 12 C 0.04 2.02 5.28 29.85 0.16 2.18 16 13 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.07 -1.71 2.73 -10.80 -0.03 -1.74 16 22 C -0.14 -3.48 9.14 71.98 0.66 -2.83 16 23 C -0.15 -3.55 7.98 71.98 0.57 -2.97 16 24 C -0.12 -3.34 7.11 22.27 0.16 -3.19 16 25 C -0.13 -3.03 9.70 22.27 0.22 -2.81 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.13 2.81 8.04 -2.91 -0.02 2.78 16 35 H 0.34 12.03 5.64 -89.69 -0.51 11.53 16 36 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 37 H 0.01 0.39 8.10 -2.39 -0.02 0.37 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.33 5.55 -2.38 -0.01 1.32 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 1.39 7.13 -2.38 -0.02 1.37 16 48 H 0.12 3.25 5.57 -2.91 -0.02 3.23 16 49 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -64.96 384.43 4.52 -60.44 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.38 Total: 25.01 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 4.28 Total: -48.43 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.16 Total: -84.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.96 4.52 -60.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096982038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.146 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds