Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 C 1.52991 * 109.47599 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47518 * 176.60013 * 4 3 2 6 6 C 1.46901 * 110.99848 * 62.93298 * 5 4 3 7 7 C 1.52996 * 109.47129 * 66.04595 * 6 5 4 8 8 C 1.53002 * 109.46781 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46946 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99919 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99707 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99921 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47244 * 60.00178 * 13 11 9 15 15 H 1.48505 * 109.46906 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47286 * 299.99953 * 13 11 9 17 17 C 1.46902 * 111.00067 * 298.98061 * 5 4 3 18 18 H 1.08996 * 109.47118 * 65.31291 * 17 5 4 19 19 C 1.53001 * 109.47028 * 185.31681 * 17 5 4 20 20 C 1.50707 * 109.46792 * 305.31266 * 17 5 4 21 21 C 1.38226 * 120.00158 * 313.76593 * 20 17 5 22 22 C 1.38237 * 119.99975 * 179.78863 * 21 20 17 23 23 C 1.38236 * 119.99993 * 0.44009 * 22 21 20 24 24 C 1.38242 * 119.99674 * 359.81322 * 23 22 21 25 25 C 1.38231 * 120.00200 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47021 * 60.00444 * 1 2 3 27 27 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47668 * 300.00508 * 1 2 3 29 29 H 1.08998 * 109.47668 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.47021 * 119.99556 * 2 1 3 31 31 H 1.08998 * 109.47136 * 59.99166 * 3 2 1 32 32 H 1.09006 * 109.47120 * 300.00052 * 3 2 1 33 33 H 1.09003 * 109.47486 * 296.60309 * 4 3 2 34 34 H 1.09005 * 109.46758 * 56.59994 * 4 3 2 35 35 H 1.09003 * 109.47203 * 186.05153 * 6 5 4 36 36 H 1.09006 * 109.46745 * 306.04124 * 6 5 4 37 37 H 1.08996 * 109.47196 * 299.99754 * 7 6 5 38 38 H 1.09001 * 109.46941 * 60.00572 * 7 6 5 39 39 H 1.09004 * 109.47249 * 299.99849 * 8 7 6 40 40 H 1.09001 * 109.47433 * 60.00177 * 8 7 6 41 41 H 0.97002 * 119.99913 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47017 * 60.00059 * 19 17 5 43 43 H 1.09008 * 109.46562 * 179.97438 * 19 17 5 44 44 H 1.08994 * 109.46851 * 299.99361 * 19 17 5 45 45 H 1.08005 * 120.00261 * 359.97438 * 21 20 17 46 46 H 1.08001 * 120.00120 * 180.27685 * 22 21 20 47 47 H 1.07997 * 120.00187 * 179.83806 * 23 22 21 48 48 H 1.07995 * 119.99497 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.00164 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0597 2.8250 -0.0815 6 6 3.6463 3.6007 1.0955 7 6 4.3368 3.0434 2.3419 8 6 3.9057 3.8510 3.5678 9 6 4.5864 3.3024 4.7954 10 1 5.2588 2.4616 4.7098 11 6 4.3499 3.8732 6.0280 12 7 3.5307 4.8967 6.1323 13 14 5.1930 3.1928 7.5496 14 1 6.6656 3.2912 7.3854 15 1 4.7747 3.9767 8.7396 16 1 4.8095 1.7700 7.7336 17 6 3.6092 3.4703 -1.3219 18 1 2.5238 3.5683 -1.3071 19 6 4.2451 4.8573 -1.4353 20 6 4.0217 2.6305 -2.5034 21 6 5.3075 2.1288 -2.5795 22 6 5.6845 1.3549 -3.6611 23 6 4.7784 1.0902 -4.6710 24 6 3.4941 1.5964 -4.5974 25 6 3.1158 2.3666 -3.5137 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9825 0.9197 34 1 3.9336 0.8767 -0.8571 35 1 3.9284 4.6449 0.9600 36 1 2.5653 3.5293 1.2164 37 1 4.0546 1.9994 2.4774 38 1 5.4178 3.1149 2.2210 39 1 4.1876 4.8952 3.4326 40 1 2.8248 3.7791 3.6886 41 1 3.3645 5.2986 6.9994 42 1 5.3306 4.7592 -1.4502 43 1 3.9112 5.3359 -2.3560 44 1 3.9467 5.4646 -0.5809 45 1 6.0167 2.3390 -1.7925 46 1 6.6878 0.9592 -3.7184 47 1 5.0738 0.4878 -5.5173 48 1 2.7864 1.3899 -5.3866 49 1 2.1126 2.7624 -3.4564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102398996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -0.608587 kcal Electronic energy + Delta-G solvation = -23517.189010 eV Core-core repulsion = 20442.984327 eV Total energy + Delta-G solvation = -3074.204683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96137 -37.93630 -34.67861 -33.98583 -32.37944 -30.95818 -30.72658 -29.69009 -27.71097 -26.17915 -23.73665 -23.55934 -22.57482 -21.80034 -21.31513 -20.00973 -18.96890 -16.79698 -16.32074 -16.03084 -15.54292 -15.25114 -14.83156 -14.51507 -14.29516 -14.08726 -13.71579 -13.59622 -13.33329 -12.80407 -12.70665 -12.45341 -12.36792 -12.12326 -11.93666 -11.80872 -11.49632 -11.32304 -11.20829 -11.05627 -11.01690 -10.88490 -10.77907 -10.64686 -10.47262 -10.33779 -10.26783 -9.48771 -9.28467 -9.03607 -8.93003 -8.68761 -8.30502 -7.92311 -5.96260 -3.98006 1.32216 1.39336 3.35807 3.39821 3.42668 3.74753 4.17656 4.49886 4.68166 4.86423 4.93961 4.96163 5.01103 5.11527 5.20516 5.30900 5.37836 5.39365 5.40610 5.47356 5.58371 5.67577 5.72649 5.75909 5.80747 5.84946 5.91470 5.93678 6.01438 6.05602 6.06533 6.11434 6.22077 6.27455 6.35083 6.43208 6.45719 6.49304 6.50062 6.64212 6.77606 6.87635 6.98721 7.18800 7.44538 7.48295 7.72698 7.88514 8.04682 8.48320 9.09105 9.65714 11.15185 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003562 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.348737 B = 7858.524290 C = 8545.148794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.157 4.157 4 C 0.052 3.948 5 N -0.527 5.527 6 C 0.049 3.951 7 C -0.102 4.102 8 C 0.023 3.977 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.115 3.885 18 H 0.047 0.953 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.014 0.986 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -6.693 -21.453 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.196 4.196 4 C -0.076 4.076 5 N -0.250 5.250 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.014 4.014 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.007 3.993 18 H 0.065 0.935 19 C -0.200 4.200 20 C -0.067 4.067 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.394 -6.556 -21.322 22.351 hybrid contribution -0.569 -0.321 0.902 1.114 sum -1.963 -6.877 -20.419 21.636 Atomic orbital electron populations 1.21765 0.96210 1.01201 1.01666 1.21408 0.95577 0.96871 1.01752 1.22243 0.98146 0.97174 1.02078 1.22262 0.92242 0.90430 1.02685 1.62378 1.59134 1.02204 1.01263 1.22409 0.97864 0.97670 0.89869 1.21623 0.99549 0.99483 0.93388 1.19057 0.96380 0.95100 0.90913 1.21221 1.26582 1.15526 0.92254 0.92784 1.25019 0.95345 0.95066 0.99045 1.69957 1.36203 1.23047 1.24457 0.86677 0.79991 0.78996 0.82449 1.20234 1.21349 1.20288 1.20560 0.97271 0.93352 0.88118 0.93478 1.21895 1.01830 0.94784 1.01537 1.19820 0.94037 0.97646 0.95230 1.21111 0.96089 0.96288 0.97528 1.21185 0.99507 0.99136 0.94503 1.21099 0.93963 1.00552 0.98943 1.21036 0.96399 0.98595 0.98193 1.21016 0.99155 0.99156 0.94351 0.93177 0.93074 0.92634 0.92465 0.91893 0.91322 0.92370 0.90126 0.91148 0.90930 0.94935 0.93500 0.92746 0.96726 0.96940 0.93033 0.91632 0.92635 0.91644 0.85129 0.86341 0.86603 0.86533 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.16 -2.05 4.54 -26.74 -0.12 -2.17 16 4 C 0.05 0.72 4.73 -3.83 -0.02 0.70 16 5 N -0.53 -7.67 4.11 -228.03 -0.94 -8.60 16 6 C 0.05 0.83 4.59 -3.83 -0.02 0.82 16 7 C -0.10 -2.13 5.08 -26.73 -0.14 -2.26 16 8 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.12 1.46 1.75 -68.86 -0.12 1.34 16 18 H 0.05 0.61 6.34 -51.93 -0.33 0.28 16 19 C -0.14 -1.74 8.95 37.16 0.33 -1.40 16 20 C -0.07 -0.79 3.56 -104.62 -0.37 -1.16 16 21 C -0.09 -1.08 8.27 -39.59 -0.33 -1.41 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.27 9.67 -39.58 -0.38 -1.65 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.02 6.51 -51.93 -0.34 0.69 16 32 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 33 H 0.08 1.23 6.34 -51.93 -0.33 0.90 16 34 H 0.07 0.95 6.25 -51.93 -0.32 0.62 16 35 H 0.07 1.25 5.88 -51.93 -0.31 0.94 16 36 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 37 H 0.05 0.97 6.49 -51.93 -0.34 0.63 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 0.81 8.07 -51.93 -0.42 0.40 16 43 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.06 0.83 6.23 -51.93 -0.32 0.51 16 45 H 0.13 1.62 7.91 -52.48 -0.42 1.20 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.11 7.99 -52.49 -0.42 0.69 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -29.76 378.99 -11.01 -40.77 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.81 Total: -0.22 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -2.70 Total: -28.06 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.20 Total: -35.09 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.76 -11.01 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.163 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds