Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47378 * 2 1 4 4 C 1.52991 * 109.47599 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47518 * 176.60013 * 4 3 2 6 6 C 1.46901 * 110.99848 * 62.93298 * 5 4 3 7 7 C 1.52996 * 109.47129 * 66.04595 * 6 5 4 8 8 C 1.53002 * 109.46781 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46946 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99919 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99707 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99921 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47244 * 60.00178 * 13 11 9 15 15 H 1.48505 * 109.46906 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47286 * 299.99953 * 13 11 9 17 17 C 1.46902 * 111.00067 * 298.98061 * 5 4 3 18 18 H 1.08996 * 109.47118 * 65.31291 * 17 5 4 19 19 C 1.53001 * 109.47028 * 185.31681 * 17 5 4 20 20 C 1.50707 * 109.46792 * 305.31266 * 17 5 4 21 21 C 1.38226 * 120.00158 * 313.76593 * 20 17 5 22 22 C 1.38237 * 119.99975 * 179.78863 * 21 20 17 23 23 C 1.38236 * 119.99993 * 0.44009 * 22 21 20 24 24 C 1.38242 * 119.99674 * 359.81322 * 23 22 21 25 25 C 1.38231 * 120.00200 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47021 * 60.00444 * 1 2 3 27 27 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47668 * 300.00508 * 1 2 3 29 29 H 1.08998 * 109.47668 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.47021 * 119.99556 * 2 1 3 31 31 H 1.08998 * 109.47136 * 59.99166 * 3 2 1 32 32 H 1.09006 * 109.47120 * 300.00052 * 3 2 1 33 33 H 1.09003 * 109.47486 * 296.60309 * 4 3 2 34 34 H 1.09005 * 109.46758 * 56.59994 * 4 3 2 35 35 H 1.09003 * 109.47203 * 186.05153 * 6 5 4 36 36 H 1.09006 * 109.46745 * 306.04124 * 6 5 4 37 37 H 1.08996 * 109.47196 * 299.99754 * 7 6 5 38 38 H 1.09001 * 109.46941 * 60.00572 * 7 6 5 39 39 H 1.09004 * 109.47249 * 299.99849 * 8 7 6 40 40 H 1.09001 * 109.47433 * 60.00177 * 8 7 6 41 41 H 0.97002 * 119.99913 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47017 * 60.00059 * 19 17 5 43 43 H 1.09008 * 109.46562 * 179.97438 * 19 17 5 44 44 H 1.08994 * 109.46851 * 299.99361 * 19 17 5 45 45 H 1.08005 * 120.00261 * 359.97438 * 21 20 17 46 46 H 1.08001 * 120.00120 * 180.27685 * 22 21 20 47 47 H 1.07997 * 120.00187 * 179.83806 * 23 22 21 48 48 H 1.07995 * 119.99497 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.00164 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0597 2.8250 -0.0815 6 6 3.6463 3.6007 1.0955 7 6 4.3368 3.0434 2.3419 8 6 3.9057 3.8510 3.5678 9 6 4.5864 3.3024 4.7954 10 1 5.2588 2.4616 4.7098 11 6 4.3499 3.8732 6.0280 12 7 3.5307 4.8967 6.1323 13 14 5.1930 3.1928 7.5496 14 1 6.6656 3.2912 7.3854 15 1 4.7747 3.9767 8.7396 16 1 4.8095 1.7700 7.7336 17 6 3.6092 3.4703 -1.3219 18 1 2.5238 3.5683 -1.3071 19 6 4.2451 4.8573 -1.4353 20 6 4.0217 2.6305 -2.5034 21 6 5.3075 2.1288 -2.5795 22 6 5.6845 1.3549 -3.6611 23 6 4.7784 1.0902 -4.6710 24 6 3.4941 1.5964 -4.5974 25 6 3.1158 2.3666 -3.5137 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9825 0.9197 34 1 3.9336 0.8767 -0.8571 35 1 3.9284 4.6449 0.9600 36 1 2.5653 3.5293 1.2164 37 1 4.0546 1.9994 2.4774 38 1 5.4178 3.1149 2.2210 39 1 4.1876 4.8952 3.4326 40 1 2.8248 3.7791 3.6886 41 1 3.3645 5.2986 6.9994 42 1 5.3306 4.7592 -1.4502 43 1 3.9112 5.3359 -2.3560 44 1 3.9467 5.4646 -0.5809 45 1 6.0167 2.3390 -1.7925 46 1 6.6878 0.9592 -3.7184 47 1 5.0738 0.4878 -5.5173 48 1 2.7864 1.3899 -5.3866 49 1 2.1126 2.7624 -3.4564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102398996.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -14.307433 kcal Electronic energy + Delta-G solvation = -23517.783037 eV Core-core repulsion = 20442.984327 eV Total energy + Delta-G solvation = -3074.798710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93652 -38.96985 -35.98277 -35.55407 -34.00343 -32.27690 -31.67908 -30.66232 -29.03826 -27.73694 -25.27804 -24.61309 -23.44506 -23.13960 -22.35588 -21.46334 -20.17850 -18.43302 -17.61866 -17.29278 -16.59500 -16.48189 -16.22400 -15.92755 -15.45959 -15.12165 -14.95302 -14.59222 -14.33462 -14.12541 -13.94106 -13.72430 -13.54069 -13.44621 -13.21354 -13.04590 -12.83089 -12.73358 -12.46750 -12.42561 -12.30728 -12.16420 -12.03510 -11.87121 -11.75613 -11.61672 -11.55207 -11.30605 -11.10645 -11.03214 -10.53577 -9.72301 -9.52434 -9.12848 -8.19530 -6.30346 0.51749 0.59865 1.39388 1.42655 1.50512 2.41026 2.86687 3.08467 3.13434 3.73315 3.91497 3.95051 4.09022 4.21218 4.24850 4.25745 4.31436 4.32294 4.38601 4.42055 4.52828 4.68899 4.69352 4.72726 4.77181 4.78797 4.81167 4.88292 4.95461 4.99777 5.01463 5.10823 5.15590 5.19291 5.22224 5.27358 5.28179 5.34774 5.37295 5.44357 5.54018 5.64701 5.71467 5.76301 5.79200 5.87301 6.14121 6.21504 6.27000 6.31599 6.86196 7.38625 8.92203 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003562 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.348737 B = 7858.524290 C = 8545.148794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.057 3.943 5 N -0.528 5.528 6 C 0.062 3.938 7 C -0.086 4.086 8 C 0.029 3.971 9 C -0.543 4.543 10 H 0.057 0.943 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.118 3.882 18 H 0.047 0.953 19 C -0.141 4.141 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.049 0.951 39 H -0.009 1.009 40 H -0.012 1.012 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -8.180 -23.077 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.188 4.188 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.065 4.065 7 C -0.124 4.124 8 C -0.009 4.009 9 C -0.581 4.581 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.192 1.192 17 C 0.010 3.990 18 H 0.065 0.935 19 C -0.198 4.198 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.006 0.994 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.151 0.849 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.161 -8.053 -22.964 24.363 hybrid contribution -0.642 0.144 1.329 1.483 sum -1.803 -7.909 -21.636 23.106 Atomic orbital electron populations 1.21750 0.95329 1.02054 1.01529 1.21389 0.96344 0.95680 1.01923 1.22148 0.97348 0.98124 1.01216 1.22205 0.92855 0.89902 1.02142 1.62294 1.59399 1.02349 1.01080 1.22097 0.97003 0.97737 0.89671 1.21349 0.99342 0.98654 0.93006 1.18939 0.94633 0.94471 0.92833 1.21657 1.26977 1.15871 0.93546 0.92437 1.25968 0.95922 0.95244 1.02622 1.70090 1.37493 1.24307 1.25480 0.85526 0.79102 0.78591 0.77999 1.19167 1.20736 1.19201 1.20563 0.97211 0.93687 0.87494 0.93481 1.21874 1.01461 0.94554 1.01904 1.19714 0.94493 0.98348 0.95257 1.21088 0.95974 0.97414 0.98043 1.21404 1.00541 0.98702 0.94192 1.21431 0.93707 1.00157 0.99234 1.21351 0.96961 0.97671 0.98252 1.21180 0.99399 0.99374 0.94375 0.92331 0.91739 0.93768 0.91283 0.92683 0.93670 0.91608 0.91868 0.90163 0.91041 0.95448 0.93498 0.93199 0.99072 0.99354 0.92782 0.92164 0.90957 0.92709 0.86495 0.84884 0.84186 0.84203 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.57 5.93 30.59 0.18 -2.39 16 3 C -0.15 -3.86 4.54 30.59 0.14 -3.72 16 4 C 0.06 1.58 4.73 86.30 0.41 1.98 16 5 N -0.53 -15.53 4.11 -875.36 -3.60 -19.13 16 6 C 0.06 2.21 4.59 86.30 0.40 2.61 16 7 C -0.09 -3.68 5.08 30.59 0.16 -3.52 16 8 C 0.03 1.57 4.97 29.85 0.15 1.71 16 9 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 11 C 0.00 0.00 5.46 84.66 0.46 0.47 16 12 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 13 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.12 2.95 1.75 44.17 0.08 3.03 16 18 H 0.05 1.18 6.34 -2.39 -0.02 1.17 16 19 C -0.14 -3.38 8.95 71.98 0.64 -2.74 16 20 C -0.08 -1.74 3.56 -19.86 -0.07 -1.81 16 21 C -0.11 -2.41 8.27 22.27 0.18 -2.22 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 25 C -0.12 -2.40 9.67 22.27 0.22 -2.19 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.38 6.51 -2.39 -0.02 1.36 16 32 H 0.07 1.60 6.37 -2.38 -0.02 1.58 16 33 H 0.06 1.97 6.34 -2.39 -0.02 1.95 16 34 H 0.08 2.09 6.25 -2.38 -0.01 2.08 16 35 H 0.07 2.55 5.88 -2.39 -0.01 2.53 16 36 H 0.03 1.00 6.17 -2.38 -0.01 0.98 16 37 H 0.05 2.00 6.49 -2.39 -0.02 1.98 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 43 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.05 1.42 6.23 -2.39 -0.01 1.40 16 45 H 0.12 2.90 7.91 -2.91 -0.02 2.88 16 46 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 48 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 49 H 0.13 2.12 7.99 -2.91 -0.02 2.09 16 Total: -1.00 -64.40 378.99 4.15 -60.25 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.88 Total: 17.78 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 4.56 Total: -48.49 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.32 Total: -76.65 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.40 4.15 -60.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398996.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.941 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds