Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.53008 * 109.47126 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47104 * 183.31943 * 4 3 2 6 6 C 1.46904 * 110.99438 * 296.35166 * 5 4 3 7 7 C 1.52990 * 109.47267 * 293.95424 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47416 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99568 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00225 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00043 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47098 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47056 * 120.00050 * 13 11 9 16 16 H 1.48499 * 109.47098 * 240.00084 * 13 11 9 17 17 C 1.46895 * 110.99972 * 60.30752 * 5 4 3 18 18 H 1.08996 * 109.47534 * 295.40171 * 17 5 4 19 19 C 1.53003 * 109.46833 * 175.40889 * 17 5 4 20 20 C 1.50701 * 109.47613 * 55.40923 * 17 5 4 21 21 C 1.38241 * 119.99877 * 47.08225 * 20 17 5 22 22 C 1.38228 * 119.99809 * 179.81561 * 21 20 17 23 23 C 1.38242 * 119.99976 * 0.39699 * 22 21 20 24 24 C 1.38232 * 119.99941 * 359.86095 * 23 22 21 25 25 C 1.38231 * 119.99836 * 227.36300 * 20 17 5 26 26 H 1.08998 * 109.46997 * 299.99559 * 1 2 3 27 27 H 1.08994 * 109.47373 * 59.99533 * 1 2 3 28 28 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46997 * 240.00441 * 2 1 3 30 30 H 1.08994 * 109.47373 * 120.00467 * 2 1 3 31 31 H 1.08999 * 109.47304 * 60.00698 * 3 2 1 32 32 H 1.08994 * 109.47435 * 300.00429 * 3 2 1 33 33 H 1.09005 * 109.46544 * 303.31499 * 4 3 2 34 34 H 1.08993 * 109.46833 * 63.31488 * 4 3 2 35 35 H 1.08999 * 109.47140 * 53.96184 * 6 5 4 36 36 H 1.09003 * 109.46486 * 173.95846 * 6 5 4 37 37 H 1.08999 * 109.47661 * 300.00440 * 7 6 5 38 38 H 1.08996 * 109.47205 * 60.00435 * 7 6 5 39 39 H 1.08997 * 109.47481 * 299.99960 * 8 7 6 40 40 H 1.08999 * 109.47547 * 60.00060 * 8 7 6 41 41 H 0.97002 * 120.00089 * 180.02562 * 12 11 9 42 42 H 1.09004 * 109.46796 * 299.99888 * 19 17 5 43 43 H 1.08997 * 109.47738 * 59.99564 * 19 17 5 44 44 H 1.08997 * 109.47134 * 180.02562 * 19 17 5 45 45 H 1.08002 * 119.99850 * 0.02562 * 21 20 17 46 46 H 1.07993 * 120.00258 * 180.23424 * 22 21 20 47 47 H 1.08003 * 119.99915 * 179.83364 * 23 22 21 48 48 H 1.08004 * 119.99891 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.00305 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8252 0.0796 6 6 3.6606 3.5945 -1.1066 7 6 4.3653 3.0298 -2.3416 8 6 3.9502 3.8315 -3.5768 9 6 4.6438 3.2749 -4.7934 10 1 5.3142 2.4337 -4.6953 11 6 4.4228 3.8395 -6.0317 12 7 3.6062 4.8633 -6.1513 13 14 5.2832 3.1499 -7.5396 14 1 6.1432 2.0073 -7.1396 15 1 4.2685 2.6870 -8.5201 16 1 6.1224 4.2077 -8.1577 17 6 3.5952 3.4776 1.3110 18 1 2.5090 3.5647 1.2886 19 6 4.2165 4.8719 1.4150 20 6 4.0086 2.6533 2.5030 21 6 5.3038 2.1800 2.6003 22 6 5.6840 1.4271 3.6954 23 6 4.7669 1.1406 4.6893 24 6 3.4703 1.6095 4.5894 25 6 3.0911 2.3657 3.4961 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.8779 0.8580 34 1 3.9329 0.9812 -0.9190 35 1 2.5812 3.5231 -1.2397 36 1 3.9420 4.6392 -0.9736 37 1 5.4448 3.1012 -2.2084 38 1 4.0840 1.9852 -2.4746 39 1 2.8708 3.7604 -3.7102 40 1 4.2318 4.8760 -3.4437 41 1 3.4504 5.2603 -7.0225 42 1 5.3028 4.7848 1.4374 43 1 3.9176 5.4682 0.5529 44 1 3.8722 5.3558 2.3290 45 1 6.0195 2.4013 1.8223 46 1 6.6968 1.0606 3.7734 47 1 5.0633 0.5502 5.5437 48 1 2.7537 1.3853 5.3657 49 1 2.0781 2.7320 3.4180 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102398998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -0.609748 kcal Electronic energy + Delta-G solvation = -23514.094221 eV Core-core repulsion = 20439.889487 eV Total energy + Delta-G solvation = -3074.204734 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95702 -37.93937 -34.68284 -33.98674 -32.38081 -30.95010 -30.73929 -29.68708 -27.71479 -26.18006 -23.74351 -23.55454 -22.57648 -21.80173 -21.32125 -20.01354 -18.96187 -16.79648 -16.32471 -16.03437 -15.55287 -15.24673 -14.82972 -14.52062 -14.29172 -14.08574 -13.71527 -13.59936 -13.33125 -12.80027 -12.71037 -12.45991 -12.38154 -12.12422 -11.93952 -11.80400 -11.49241 -11.31952 -11.21318 -11.05624 -11.02805 -10.88440 -10.80348 -10.64610 -10.43117 -10.33764 -10.27163 -9.49010 -9.29127 -9.01468 -8.92972 -8.69008 -8.31362 -7.92286 -5.96698 -3.98275 1.32306 1.39510 3.33064 3.40488 3.45067 3.74753 4.18035 4.49749 4.68433 4.86193 4.93883 4.96007 5.00929 5.11474 5.20212 5.30724 5.37624 5.39177 5.40478 5.47501 5.58379 5.67363 5.72445 5.75676 5.80663 5.84661 5.91333 5.93769 6.01351 6.05622 6.06439 6.11341 6.21864 6.27228 6.34868 6.43287 6.45694 6.49118 6.50119 6.64486 6.77529 6.87533 6.98833 7.18762 7.44512 7.48283 7.73014 7.88307 8.04420 8.48185 9.09293 9.65636 11.14800 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.003564 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.734283 B = 7855.520383 C = 8551.429201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.158 4.158 4 C 0.052 3.948 5 N -0.527 5.527 6 C 0.049 3.951 7 C -0.102 4.102 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.115 3.885 18 H 0.048 0.952 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -6.570 21.504 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.076 4.076 5 N -0.250 5.250 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.015 4.015 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.007 3.993 18 H 0.065 0.935 19 C -0.201 4.201 20 C -0.067 4.067 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.609 -6.442 21.382 22.390 hybrid contribution -0.571 -0.306 -0.918 1.124 sum -2.180 -6.749 20.465 21.659 Atomic orbital electron populations 1.21763 0.96212 1.01206 1.01661 1.21407 0.95573 0.96869 1.01763 1.22246 0.98155 0.97178 1.02073 1.22258 0.92226 0.90427 1.02681 1.62378 1.59061 1.02187 1.01339 1.22410 0.97934 0.97760 0.89719 1.21621 0.99479 0.99445 0.93496 1.19066 0.96453 0.95139 0.90869 1.21295 1.26382 1.15427 0.92307 0.92678 1.25022 0.95383 0.95070 0.99049 1.69974 1.36537 1.23257 1.23873 0.86567 0.79500 0.79023 0.83111 1.19726 1.21090 1.21050 1.20559 0.97233 0.93377 0.88144 0.93467 1.21901 1.01892 0.94716 1.01575 1.19818 0.93961 0.97667 0.95276 1.21108 0.96095 0.96440 0.97343 1.21183 0.99457 0.99191 0.94503 1.21099 0.93805 1.00589 0.99061 1.21037 0.96324 0.98781 0.98089 1.21018 0.99081 0.99130 0.94436 0.93170 0.92648 0.93071 0.91891 0.92455 0.92340 0.91351 0.91184 0.90110 0.94953 0.90907 0.92749 0.93495 0.96930 0.96713 0.93151 0.91628 0.91632 0.92629 0.85153 0.86345 0.86604 0.86535 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.16 -2.05 4.54 -26.73 -0.12 -2.17 16 4 C 0.05 0.72 4.75 -3.82 -0.02 0.71 16 5 N -0.53 -7.66 4.14 -228.04 -0.94 -8.60 16 6 C 0.05 0.83 4.59 -3.83 -0.02 0.81 16 7 C -0.10 -2.13 5.08 -26.74 -0.14 -2.26 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 10 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 C 0.12 1.46 1.75 -68.87 -0.12 1.34 16 18 H 0.05 0.61 6.28 -51.93 -0.33 0.28 16 19 C -0.14 -1.74 8.93 37.16 0.33 -1.41 16 20 C -0.07 -0.79 3.55 -104.62 -0.37 -1.16 16 21 C -0.09 -1.08 8.35 -39.58 -0.33 -1.41 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.27 9.67 -39.58 -0.38 -1.65 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 32 H 0.07 1.01 6.52 -51.93 -0.34 0.68 16 33 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 34 H 0.08 1.24 6.31 -51.93 -0.33 0.91 16 35 H 0.03 0.57 6.19 -51.93 -0.32 0.24 16 36 H 0.07 1.25 5.85 -51.93 -0.30 0.95 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.97 6.48 -51.93 -0.34 0.63 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 0.81 8.05 -51.93 -0.42 0.40 16 43 H 0.06 0.84 6.21 -51.93 -0.32 0.51 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.13 1.61 7.94 -52.49 -0.42 1.20 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 49 H 0.12 1.11 7.99 -52.48 -0.42 0.70 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -29.79 379.05 -11.02 -40.81 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.81 Total: -0.31 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.70 Total: -28.03 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.21 Total: -35.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.79 -11.02 -40.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.198 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds