Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.53008 * 109.47126 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47104 * 183.31943 * 4 3 2 6 6 C 1.46904 * 110.99438 * 296.35166 * 5 4 3 7 7 C 1.52990 * 109.47267 * 293.95424 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47416 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99568 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00225 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00043 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47098 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47056 * 120.00050 * 13 11 9 16 16 H 1.48499 * 109.47098 * 240.00084 * 13 11 9 17 17 C 1.46895 * 110.99972 * 60.30752 * 5 4 3 18 18 H 1.08996 * 109.47534 * 295.40171 * 17 5 4 19 19 C 1.53003 * 109.46833 * 175.40889 * 17 5 4 20 20 C 1.50701 * 109.47613 * 55.40923 * 17 5 4 21 21 C 1.38241 * 119.99877 * 47.08225 * 20 17 5 22 22 C 1.38228 * 119.99809 * 179.81561 * 21 20 17 23 23 C 1.38242 * 119.99976 * 0.39699 * 22 21 20 24 24 C 1.38232 * 119.99941 * 359.86095 * 23 22 21 25 25 C 1.38231 * 119.99836 * 227.36300 * 20 17 5 26 26 H 1.08998 * 109.46997 * 299.99559 * 1 2 3 27 27 H 1.08994 * 109.47373 * 59.99533 * 1 2 3 28 28 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46997 * 240.00441 * 2 1 3 30 30 H 1.08994 * 109.47373 * 120.00467 * 2 1 3 31 31 H 1.08999 * 109.47304 * 60.00698 * 3 2 1 32 32 H 1.08994 * 109.47435 * 300.00429 * 3 2 1 33 33 H 1.09005 * 109.46544 * 303.31499 * 4 3 2 34 34 H 1.08993 * 109.46833 * 63.31488 * 4 3 2 35 35 H 1.08999 * 109.47140 * 53.96184 * 6 5 4 36 36 H 1.09003 * 109.46486 * 173.95846 * 6 5 4 37 37 H 1.08999 * 109.47661 * 300.00440 * 7 6 5 38 38 H 1.08996 * 109.47205 * 60.00435 * 7 6 5 39 39 H 1.08997 * 109.47481 * 299.99960 * 8 7 6 40 40 H 1.08999 * 109.47547 * 60.00060 * 8 7 6 41 41 H 0.97002 * 120.00089 * 180.02562 * 12 11 9 42 42 H 1.09004 * 109.46796 * 299.99888 * 19 17 5 43 43 H 1.08997 * 109.47738 * 59.99564 * 19 17 5 44 44 H 1.08997 * 109.47134 * 180.02562 * 19 17 5 45 45 H 1.08002 * 119.99850 * 0.02562 * 21 20 17 46 46 H 1.07993 * 120.00258 * 180.23424 * 22 21 20 47 47 H 1.08003 * 119.99915 * 179.83364 * 23 22 21 48 48 H 1.08004 * 119.99891 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.00305 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8252 0.0796 6 6 3.6606 3.5945 -1.1066 7 6 4.3653 3.0298 -2.3416 8 6 3.9502 3.8315 -3.5768 9 6 4.6438 3.2749 -4.7934 10 1 5.3142 2.4337 -4.6953 11 6 4.4228 3.8395 -6.0317 12 7 3.6062 4.8633 -6.1513 13 14 5.2832 3.1499 -7.5396 14 1 6.1432 2.0073 -7.1396 15 1 4.2685 2.6870 -8.5201 16 1 6.1224 4.2077 -8.1577 17 6 3.5952 3.4776 1.3110 18 1 2.5090 3.5647 1.2886 19 6 4.2165 4.8719 1.4150 20 6 4.0086 2.6533 2.5030 21 6 5.3038 2.1800 2.6003 22 6 5.6840 1.4271 3.6954 23 6 4.7669 1.1406 4.6893 24 6 3.4703 1.6095 4.5894 25 6 3.0911 2.3657 3.4961 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.8779 0.8580 34 1 3.9329 0.9812 -0.9190 35 1 2.5812 3.5231 -1.2397 36 1 3.9420 4.6392 -0.9736 37 1 5.4448 3.1012 -2.2084 38 1 4.0840 1.9852 -2.4746 39 1 2.8708 3.7604 -3.7102 40 1 4.2318 4.8760 -3.4437 41 1 3.4504 5.2603 -7.0225 42 1 5.3028 4.7848 1.4374 43 1 3.9176 5.4682 0.5529 44 1 3.8722 5.3558 2.3290 45 1 6.0195 2.4013 1.8223 46 1 6.6968 1.0606 3.7734 47 1 5.0633 0.5502 5.5437 48 1 2.7537 1.3853 5.3657 49 1 2.0781 2.7320 3.4180 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102398998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -14.339221 kcal Electronic energy + Delta-G solvation = -23514.689575 eV Core-core repulsion = 20439.889487 eV Total energy + Delta-G solvation = -3074.800088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93195 -38.97183 -35.98746 -35.55156 -34.00366 -32.27563 -31.68265 -30.65937 -29.04160 -27.73565 -25.28066 -24.61091 -23.44723 -23.14174 -22.35416 -21.46922 -20.16891 -18.43928 -17.61774 -17.29613 -16.59484 -16.48385 -16.21690 -15.92494 -15.46823 -15.12181 -14.95518 -14.58844 -14.35025 -14.12486 -13.93599 -13.72090 -13.54267 -13.43934 -13.21477 -13.04938 -12.86634 -12.72968 -12.45592 -12.41640 -12.30699 -12.14963 -12.03620 -11.87135 -11.75122 -11.61791 -11.55137 -11.29579 -11.10349 -11.02304 -10.54638 -9.72305 -9.52779 -9.12649 -8.19852 -6.30444 0.51789 0.59987 1.39351 1.39632 1.53253 2.40817 2.86501 3.09111 3.13278 3.73623 3.91398 3.94949 4.08979 4.21267 4.24927 4.25672 4.31610 4.32122 4.38739 4.41981 4.52885 4.68857 4.69399 4.72702 4.77204 4.78873 4.81264 4.88361 4.95504 4.99864 5.01604 5.10943 5.15683 5.19426 5.22358 5.27375 5.28258 5.34901 5.37276 5.44468 5.54368 5.64796 5.71505 5.76326 5.79431 5.87386 6.14167 6.21567 6.27052 6.31652 6.86437 7.38650 8.92246 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.003564 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.734283 B = 7855.520383 C = 8551.429201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.057 3.943 5 N -0.528 5.528 6 C 0.062 3.938 7 C -0.086 4.086 8 C 0.028 3.972 9 C -0.540 4.540 10 H 0.057 0.943 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.118 3.882 18 H 0.048 0.952 19 C -0.141 4.141 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.046 0.954 39 H -0.012 1.012 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -8.021 23.131 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.188 4.188 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.065 4.065 7 C -0.124 4.124 8 C -0.009 4.009 9 C -0.578 4.578 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.203 1.203 17 C 0.010 3.990 18 H 0.066 0.934 19 C -0.198 4.198 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.007 0.993 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.151 0.849 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.415 -7.901 23.026 24.385 hybrid contribution -0.633 0.148 -1.348 1.496 sum -2.048 -7.753 21.678 23.114 Atomic orbital electron populations 1.21748 0.95317 1.02053 1.01537 1.21388 0.96351 0.95682 1.01923 1.22151 0.97320 0.98131 1.01241 1.22200 0.92875 0.89894 1.02113 1.62295 1.59369 1.02346 1.01108 1.22098 0.97040 0.97809 0.89569 1.21348 0.99316 0.98646 0.93050 1.18946 0.94680 0.94495 0.92814 1.21707 1.26769 1.15734 0.93596 0.92470 1.25965 0.96018 0.95282 1.02536 1.70099 1.37806 1.24502 1.24962 0.85419 0.78458 0.78583 0.78725 1.18680 1.20310 1.20280 1.20563 0.97173 0.93684 0.87546 0.93448 1.21880 1.01533 0.94505 1.01916 1.19713 0.94400 0.98401 0.95284 1.21086 0.95966 0.97569 0.97878 1.21401 1.00520 0.98755 0.94172 1.21430 0.93569 1.00151 0.99377 1.21351 0.96923 0.97858 0.98114 1.21181 0.99326 0.99316 0.94486 0.92310 0.93768 0.91750 0.92697 0.91282 0.91545 0.93670 0.90232 0.91871 0.95463 0.91007 0.93214 0.93500 0.99335 0.99042 0.92798 0.92161 0.92692 0.90961 0.86516 0.84891 0.84188 0.84202 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.56 5.93 30.59 0.18 -2.38 16 3 C -0.15 -3.84 4.54 30.60 0.14 -3.70 16 4 C 0.06 1.58 4.75 86.31 0.41 1.99 16 5 N -0.53 -15.52 4.14 -875.37 -3.62 -19.14 16 6 C 0.06 2.21 4.59 86.30 0.40 2.60 16 7 C -0.09 -3.68 5.08 30.59 0.16 -3.53 16 8 C 0.03 1.53 4.97 29.85 0.15 1.68 16 9 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 12 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 13 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.12 2.94 1.75 44.17 0.08 3.02 16 18 H 0.05 1.19 6.28 -2.39 -0.02 1.17 16 19 C -0.14 -3.39 8.93 71.98 0.64 -2.75 16 20 C -0.08 -1.74 3.55 -19.87 -0.07 -1.81 16 21 C -0.11 -2.41 8.35 22.27 0.19 -2.22 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 25 C -0.12 -2.40 9.67 22.27 0.22 -2.19 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.60 6.34 -2.39 -0.02 1.58 16 32 H 0.04 1.37 6.52 -2.39 -0.02 1.36 16 33 H 0.08 2.08 6.37 -2.38 -0.02 2.06 16 34 H 0.06 1.97 6.31 -2.39 -0.02 1.95 16 35 H 0.03 0.99 6.19 -2.39 -0.01 0.98 16 36 H 0.07 2.56 5.85 -2.39 -0.01 2.54 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.00 6.48 -2.39 -0.02 1.98 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 43 H 0.05 1.42 6.21 -2.39 -0.01 1.40 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.12 2.90 7.94 -2.91 -0.02 2.87 16 46 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 48 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 49 H 0.13 2.12 7.99 -2.91 -0.02 2.09 16 Total: -1.00 -64.41 379.05 4.13 -60.28 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.88 Total: 17.50 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 4.56 Total: -48.37 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.34 Total: -76.56 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.41 4.13 -60.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.941 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds