Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47462 * 270.00355 * 3 2 1 5 5 H 1.48501 * 109.47023 * 30.01036 * 3 2 1 6 6 H 1.48506 * 109.46844 * 150.00230 * 3 2 1 7 7 C 1.37883 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47169 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47243 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47117 * 289.05446 * 12 11 10 14 14 C 1.76203 * 103.00197 * 179.97438 * 12 11 10 15 15 C 1.38262 * 119.96836 * 270.02009 * 14 12 11 16 16 C 1.38199 * 120.04663 * 179.97438 * 15 14 12 17 17 C 1.38446 * 119.98664 * 359.74716 * 16 15 14 18 18 F 1.35101 * 120.02896 * 180.27513 * 17 16 15 19 19 C 1.38545 * 119.94093 * 0.50690 * 17 16 15 20 20 Cl 1.73599 * 120.02798 * 179.77296 * 19 17 16 21 21 C 1.38215 * 119.96656 * 90.00105 * 14 12 11 22 22 H 0.96998 * 119.99632 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47033 * 59.99771 * 9 7 2 24 24 H 1.08999 * 109.47289 * 300.00215 * 9 7 2 25 25 H 1.08994 * 109.47250 * 59.99913 * 10 9 7 26 26 H 1.09000 * 109.46462 * 299.99596 * 10 9 7 27 27 H 1.09003 * 109.47239 * 60.00028 * 11 10 9 28 28 H 1.08999 * 109.47316 * 299.99943 * 11 10 9 29 29 H 1.07999 * 119.97341 * 0.02562 * 15 14 12 30 30 H 1.07998 * 120.00014 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.99509 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3659 -0.0019 13 8 3.2992 -6.4411 -1.2684 14 6 1.6116 -7.7828 -0.0019 15 6 1.2012 -8.3382 1.1959 16 6 0.3793 -9.4492 1.1979 17 6 -0.0378 -10.0035 -0.0002 18 9 -0.8458 -11.0863 0.0007 19 6 0.3780 -9.4497 -1.2002 20 17 -0.1388 -10.1465 -2.7039 21 6 1.2008 -8.3377 -1.1992 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8539 -5.0446 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 1.5225 -7.9030 2.1307 30 1 0.0588 -9.8822 2.1340 31 1 1.5215 -7.9025 -2.1342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108020273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = -80.768010 kcal Electronic energy + Delta-G solvation = -17493.838453 eV Core-core repulsion = 14227.799567 eV Total energy + Delta-G solvation = -3266.038886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.37229 -39.31202 -36.83286 -35.67867 -34.48142 -32.06035 -31.39136 -30.88887 -27.54532 -23.72037 -23.56552 -23.10087 -20.40283 -18.56279 -17.85175 -17.00824 -16.57136 -16.22413 -16.14390 -15.18384 -14.79446 -14.66159 -14.36324 -14.27118 -13.85316 -13.40707 -13.29890 -12.56396 -12.32039 -12.09322 -11.88243 -11.84039 -11.47326 -11.31669 -10.90597 -10.84032 -10.72675 -10.29278 -9.84710 -9.51596 -9.40110 -9.20391 -9.12845 -8.38621 -8.23560 -6.03373 -4.06368 0.32794 0.67284 1.65258 1.78241 2.63874 3.07562 3.30663 3.36987 3.39922 3.64984 3.89433 4.22784 4.43598 4.64775 4.83097 5.04547 5.25770 5.32392 5.43039 5.48314 5.54383 5.63502 5.75982 6.12812 6.24012 6.44563 6.63714 6.98826 7.62262 7.74217 7.95650 8.36799 9.00681 9.58152 11.07804 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.003047 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.014524 B = 9188.109716 C = 9262.155528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.438 4.438 12 S 1.320 4.680 13 O -0.850 6.850 14 C -0.457 4.457 15 C -0.012 4.012 16 C -0.159 4.159 17 C 0.136 3.864 18 F -0.125 7.125 19 C -0.090 4.090 20 Cl -0.050 7.050 21 C -0.017 4.017 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -21.079 5.413 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.576 4.576 12 S 1.518 4.482 13 O -0.845 6.845 14 C -0.551 4.551 15 C -0.031 4.031 16 C -0.179 4.179 17 C 0.115 3.885 18 F -0.103 7.103 19 C -0.119 4.119 20 Cl -0.021 7.021 21 C -0.037 4.037 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.440 -21.104 5.247 21.883 hybrid contribution -1.498 0.489 -2.024 2.566 sum 0.941 -20.615 3.223 20.887 Atomic orbital electron populations 1.69964 1.06101 1.26674 1.50745 1.25032 0.94855 0.99326 0.95237 0.86583 0.79860 0.83355 0.78153 1.20688 1.21210 1.19739 1.21267 0.93144 0.91007 1.50784 0.92498 1.19091 0.93794 0.90841 0.97429 1.21333 0.99038 0.91841 1.01087 1.27790 1.11803 1.10433 1.07589 1.69551 0.86707 0.82359 1.09542 1.93106 1.63564 1.83284 1.44590 1.28296 1.13770 1.17151 0.95881 1.20895 0.92075 0.92466 0.97647 1.21287 1.01266 0.98712 0.96643 1.17588 0.92092 0.85579 0.93222 1.91554 1.70039 1.51452 1.97288 1.21141 1.04321 0.99530 0.86918 1.98393 1.89640 1.83587 1.30511 1.21052 0.91315 0.91669 0.99637 0.92964 0.96712 0.96215 0.91927 0.92814 0.89741 0.86786 0.82639 0.83149 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 10 C -0.09 -1.79 5.16 -26.73 -0.14 -1.93 16 11 C -0.44 -6.44 5.88 37.15 0.22 -6.22 16 12 S 1.32 15.04 13.54 -107.50 -1.46 13.58 16 13 O -0.85 -14.88 16.90 -35.23 -0.60 -15.48 16 14 C -0.46 -4.89 5.61 -39.58 -0.22 -5.11 16 15 C -0.01 -0.09 9.75 -39.59 -0.39 -0.47 16 16 C -0.16 -1.30 10.03 -39.52 -0.40 -1.69 16 17 C 0.14 1.47 7.28 -39.39 -0.29 1.18 16 18 F -0.13 -1.40 16.84 2.25 0.04 -1.36 16 19 C -0.09 -1.11 6.33 -39.43 -0.25 -1.35 16 20 Cl -0.05 -0.61 28.62 -51.86 -1.48 -2.09 16 21 C -0.02 -0.22 9.23 -39.56 -0.36 -0.59 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 28 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 29 H 0.16 0.49 8.06 -52.49 -0.42 0.06 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.15 2.09 7.45 -52.49 -0.39 1.70 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -35.53 307.32 -8.84 -44.37 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -3.31 Total: -5.08 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -2.37 Total: -29.00 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.60 Total: -15.48 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 15.04 SS G_CDS: -1.46 Total: 13.58 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.53 -8.84 -44.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.397 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds