Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47462 * 270.00355 * 3 2 1 5 5 H 1.48501 * 109.47023 * 30.01036 * 3 2 1 6 6 H 1.48506 * 109.46844 * 150.00230 * 3 2 1 7 7 C 1.37883 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47169 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47243 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47117 * 289.05446 * 12 11 10 14 14 C 1.76203 * 103.00197 * 179.97438 * 12 11 10 15 15 C 1.38262 * 119.96836 * 270.02009 * 14 12 11 16 16 C 1.38199 * 120.04663 * 179.97438 * 15 14 12 17 17 C 1.38446 * 119.98664 * 359.74716 * 16 15 14 18 18 F 1.35101 * 120.02896 * 180.27513 * 17 16 15 19 19 C 1.38545 * 119.94093 * 0.50690 * 17 16 15 20 20 Cl 1.73599 * 120.02798 * 179.77296 * 19 17 16 21 21 C 1.38215 * 119.96656 * 90.00105 * 14 12 11 22 22 H 0.96998 * 119.99632 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47033 * 59.99771 * 9 7 2 24 24 H 1.08999 * 109.47289 * 300.00215 * 9 7 2 25 25 H 1.08994 * 109.47250 * 59.99913 * 10 9 7 26 26 H 1.09000 * 109.46462 * 299.99596 * 10 9 7 27 27 H 1.09003 * 109.47239 * 60.00028 * 11 10 9 28 28 H 1.08999 * 109.47316 * 299.99943 * 11 10 9 29 29 H 1.07999 * 119.97341 * 0.02562 * 15 14 12 30 30 H 1.07998 * 120.00014 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.99509 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3659 -0.0019 13 8 3.2992 -6.4411 -1.2684 14 6 1.6116 -7.7828 -0.0019 15 6 1.2012 -8.3382 1.1959 16 6 0.3793 -9.4492 1.1979 17 6 -0.0378 -10.0035 -0.0002 18 9 -0.8458 -11.0863 0.0007 19 6 0.3780 -9.4497 -1.2002 20 17 -0.1388 -10.1465 -2.7039 21 6 1.2008 -8.3377 -1.1992 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8539 -5.0446 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 1.5225 -7.9030 2.1307 30 1 0.0588 -9.8822 2.1340 31 1 1.5215 -7.9025 -2.1342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108020273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = -104.041959 kcal Electronic energy + Delta-G solvation = -17494.847687 eV Core-core repulsion = 14227.799567 eV Total energy + Delta-G solvation = -3267.048120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.20439 -40.11201 -37.72939 -36.93499 -36.27240 -33.98980 -32.17608 -31.70815 -29.36682 -25.40188 -24.38715 -24.09239 -22.06835 -19.43320 -18.80050 -18.43530 -17.84681 -17.40121 -16.98947 -16.52670 -16.16914 -15.93922 -15.74786 -15.08319 -14.69668 -14.42829 -14.37876 -14.20452 -13.78969 -13.74339 -13.04256 -12.79251 -12.67812 -12.66010 -12.51131 -12.44306 -12.21491 -11.83111 -11.55445 -11.27830 -10.92651 -10.54541 -10.28974 -10.04318 -9.38238 -8.18893 -6.30121 -0.51255 -0.11966 0.75915 0.84061 1.42049 1.43151 1.54428 1.69884 2.24529 2.42631 2.84580 2.87841 3.14539 3.49043 3.93305 4.04294 4.11239 4.23197 4.31513 4.54088 4.65618 4.67037 4.90225 4.92600 5.02135 5.21431 5.24869 5.53585 5.54310 5.73897 5.86743 6.25268 6.87815 7.39529 8.92627 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.003047 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.014524 B = 9188.109716 C = 9262.155528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.089 4.089 11 C -0.449 4.449 12 S 1.416 4.584 13 O -0.913 6.913 14 C -0.470 4.470 15 C 0.010 3.990 16 C -0.146 4.146 17 C 0.126 3.874 18 F -0.129 7.129 19 C -0.110 4.110 20 Cl -0.063 7.063 21 C -0.041 4.041 22 H 0.263 0.737 23 H -0.025 1.025 24 H 0.009 0.991 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.144 0.856 29 H 0.215 0.785 30 H 0.191 0.809 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -21.720 8.368 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.585 4.585 12 S 1.614 4.386 13 O -0.909 6.909 14 C -0.566 4.566 15 C -0.008 4.008 16 C -0.165 4.165 17 C 0.106 3.894 18 F -0.108 7.108 19 C -0.139 4.139 20 Cl -0.034 7.034 21 C -0.061 4.061 22 H 0.072 0.928 23 H -0.006 1.006 24 H 0.027 0.973 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.231 0.769 30 H 0.208 0.792 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.464 -21.721 8.198 23.473 hybrid contribution -1.873 0.564 -2.908 3.504 sum 1.591 -21.156 5.290 21.866 Atomic orbital electron populations 1.70099 1.07855 1.27725 1.51857 1.25994 0.95751 1.03419 0.94786 0.85469 0.79027 0.78485 0.78224 1.20538 1.20661 1.18019 1.21786 0.93818 0.92408 1.50304 0.91755 1.19035 0.94426 0.92899 0.94929 1.21142 0.97992 0.91913 1.01729 1.27874 1.12562 1.10296 1.07760 1.68749 0.83564 0.80083 1.06158 1.92979 1.65986 1.84302 1.47586 1.28153 1.14757 1.17014 0.96669 1.21590 0.89691 0.91223 0.98311 1.21816 0.99785 0.98003 0.96899 1.17926 0.92168 0.85613 0.93713 1.91545 1.70201 1.51695 1.97322 1.21238 1.05295 1.00076 0.87253 1.98379 1.89781 1.83719 1.31512 1.20954 0.92782 0.92695 0.99679 0.92845 1.00642 0.97296 0.88599 0.94781 0.92555 0.83744 0.76866 0.79156 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.37 5.16 30.59 0.16 -3.21 16 11 C -0.45 -12.82 5.88 71.98 0.42 -12.40 16 12 S 1.42 29.66 13.54 -56.49 -0.77 28.89 16 13 O -0.91 -32.10 16.90 -148.98 -2.52 -34.62 16 14 C -0.47 -8.99 5.61 22.27 0.12 -8.86 16 15 C 0.01 0.10 9.75 22.27 0.22 0.32 16 16 C -0.15 -1.70 10.03 22.31 0.22 -1.47 16 17 C 0.13 2.47 7.28 22.39 0.16 2.63 16 18 F -0.13 -2.68 16.84 44.97 0.76 -1.92 16 19 C -0.11 -2.67 6.33 22.36 0.14 -2.53 16 20 Cl -0.06 -1.58 28.62 -2.72 -0.08 -1.65 16 21 C -0.04 -1.06 9.23 22.29 0.21 -0.86 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 23 H -0.02 -1.45 8.14 -2.38 -0.02 -1.47 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 28 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.21 -0.32 8.06 -2.91 -0.02 -0.35 16 30 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.12 3.69 7.45 -2.91 -0.02 3.67 16 Total: -1.00 -81.94 307.32 3.35 -78.59 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 1.14 Total: -3.75 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 2.50 Total: -54.89 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -2.52 Total: -34.62 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.92 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 29.66 SS G_CDS: -0.77 Total: 28.89 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -81.94 3.35 -78.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.451 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds