Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00254 * 2 1 4 4 H 1.48505 * 109.47347 * 269.99465 * 3 2 1 5 5 H 1.48500 * 109.47412 * 29.99678 * 3 2 1 6 6 H 1.48508 * 109.47168 * 149.99912 * 3 2 1 7 7 C 1.37888 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99422 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47290 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47451 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.53859 * 68.37415 * 11 10 9 13 13 O 1.42094 * 110.54182 * 291.62523 * 11 10 9 14 14 O 1.52198 * 104.44905 * 179.97438 * 11 10 9 15 15 C 1.35929 * 113.99881 * 75.00331 * 14 11 10 16 16 C 1.38701 * 120.05648 * 269.95507 * 15 14 11 17 17 C 1.38153 * 119.95853 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07157 * 0.02562 * 17 16 15 19 19 C 1.38238 * 120.11971 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.04624 * 359.94924 * 19 18 17 21 21 Cl 1.73604 * 120.04140 * 180.02562 * 20 19 18 22 22 H 0.97002 * 120.00031 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47009 * 59.99891 * 9 7 2 24 24 H 1.08997 * 109.47068 * 300.00263 * 9 7 2 25 25 H 1.08995 * 109.47102 * 59.99658 * 10 9 7 26 26 H 1.09005 * 109.46990 * 300.00284 * 10 9 7 27 27 H 1.08003 * 120.02367 * 0.04181 * 16 15 14 28 28 H 1.08001 * 119.96476 * 180.29683 * 17 16 15 29 29 H 1.08006 * 119.93616 * 179.97438 * 18 17 16 30 30 H 1.08008 * 119.97717 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 16 1.3380 -5.2331 -0.0002 12 8 0.6644 -5.4193 -1.2376 13 8 0.6636 -5.4201 1.2364 14 8 2.4244 -6.2990 -0.0008 15 6 3.0442 -6.4574 1.1986 16 6 4.1735 -5.7111 1.5009 17 6 4.8021 -5.8741 2.7203 18 6 4.3068 -6.7808 3.6394 19 6 3.1821 -7.5270 3.3409 20 6 2.5489 -7.3675 2.1223 21 17 1.1360 -8.3042 1.7478 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8902 25 1 2.8717 -3.6045 0.8904 26 1 2.8717 -3.6045 -0.8895 27 1 4.5611 -5.0027 0.7836 28 1 5.6786 -5.2895 2.9577 29 1 4.8002 -6.9068 4.5919 30 1 2.7975 -8.2349 4.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324184.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -89.890872 kcal Electronic energy + Delta-G solvation = -18914.102667 eV Core-core repulsion = 15635.295394 eV Total energy + Delta-G solvation = -3278.807273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07067 -38.24694 -36.74085 -36.60372 -35.62864 -33.97962 -31.47360 -31.02666 -30.41673 -25.76659 -23.73491 -23.24680 -21.76589 -20.39678 -18.25614 -17.70089 -17.14581 -16.83017 -16.40548 -15.36772 -15.20253 -14.61151 -14.58958 -14.15322 -13.65586 -13.51453 -13.16896 -12.55931 -12.46334 -12.21160 -11.84076 -11.79765 -11.66095 -11.60188 -11.51551 -11.11935 -11.05353 -10.95745 -10.46444 -10.43818 -9.78619 -9.36889 -9.20005 -8.92836 -8.53595 -6.15638 -4.21648 0.24730 0.81764 1.02364 1.89787 2.42878 3.19249 3.23919 3.30154 3.32377 4.04354 4.24416 4.34025 4.40179 4.58643 4.74593 4.87627 4.93335 5.19486 5.31267 5.48329 5.56082 5.69718 5.75256 5.93385 6.01001 6.37658 6.42781 7.24506 7.30456 7.76627 8.12716 8.81246 9.43196 10.95436 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.005157 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.571870 B = 5428.417744 C = 6164.372479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.613 4.613 11 S 2.567 3.433 12 O -0.932 6.932 13 O -0.950 6.950 14 O -0.669 6.669 15 C 0.086 3.914 16 C -0.117 4.117 17 C -0.098 4.098 18 C -0.096 4.096 19 C -0.099 4.099 20 C -0.016 4.016 21 Cl -0.040 7.040 22 H 0.266 0.734 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 -14.536 7.224 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.744 4.744 11 S 2.667 3.333 12 O -0.930 6.930 13 O -0.948 6.948 14 O -0.627 6.627 15 C 0.044 3.956 16 C -0.137 4.137 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.045 4.045 21 Cl -0.011 7.011 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.140 0.860 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.520 -15.139 6.976 19.196 hybrid contribution 0.568 1.411 -0.276 1.546 sum 10.089 -13.728 6.700 18.306 Atomic orbital electron populations 1.69953 1.06132 1.27281 1.49361 1.25070 0.94979 0.99560 0.94836 0.86456 0.79669 0.82795 0.78277 1.20423 1.20974 1.19754 1.20980 0.93045 0.89650 1.52418 0.91993 1.18952 0.92494 0.90221 0.99097 1.30745 1.14327 1.18913 1.10390 1.06371 0.75257 0.76820 0.74886 1.93591 1.69969 1.84421 1.45035 1.93617 1.72214 1.83560 1.45423 1.85795 1.65053 1.72152 1.39724 1.17760 0.95746 1.00330 0.81807 1.21482 0.93849 0.99462 0.98914 1.21174 1.00191 0.97974 0.92277 1.21321 0.95262 0.94918 1.00001 1.21053 0.95693 1.00632 0.94363 1.21129 0.91682 0.96226 0.95416 1.98405 1.37959 1.70326 1.94374 0.92459 0.94698 0.94575 0.85961 0.85607 0.82986 0.83739 0.84002 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.79 4.98 -27.89 -0.14 0.65 16 10 C -0.61 -11.87 5.40 37.16 0.20 -11.67 16 11 S 2.57 50.19 5.15 -107.50 -0.55 49.63 16 12 O -0.93 -21.06 18.09 -67.04 -1.21 -22.28 16 13 O -0.95 -19.79 15.18 -67.03 -1.02 -20.81 16 14 O -0.67 -11.27 9.51 -51.84 -0.49 -11.77 16 15 C 0.09 1.28 4.79 -39.20 -0.19 1.09 16 16 C -0.12 -1.36 8.46 -39.44 -0.33 -1.69 16 17 C -0.10 -0.87 10.04 -39.60 -0.40 -1.26 16 18 C -0.10 -0.79 10.04 -39.56 -0.40 -1.19 16 19 C -0.10 -1.01 9.83 -39.58 -0.39 -1.40 16 20 C -0.02 -0.22 5.66 -39.36 -0.22 -0.44 16 21 Cl -0.04 -0.60 27.26 -51.86 -1.41 -2.01 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.12 2.06 6.61 -51.93 -0.34 1.71 16 26 H 0.13 2.17 8.14 -51.92 -0.42 1.74 16 27 H 0.15 1.48 7.50 -52.48 -0.39 1.09 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 30 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -34.39 291.88 -9.67 -44.06 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -2.81 Total: -2.69 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -2.28 Total: -28.91 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.72 Total: -54.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.55 Total: 49.63 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.41 Total: -2.01 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.39 -9.67 -44.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324184.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.828 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds