Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00254 * 2 1 4 4 H 1.48505 * 109.47347 * 269.99465 * 3 2 1 5 5 H 1.48500 * 109.47412 * 29.99678 * 3 2 1 6 6 H 1.48508 * 109.47168 * 149.99912 * 3 2 1 7 7 C 1.37888 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99422 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47290 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47451 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.53859 * 68.37415 * 11 10 9 13 13 O 1.42094 * 110.54182 * 291.62523 * 11 10 9 14 14 O 1.52198 * 104.44905 * 179.97438 * 11 10 9 15 15 C 1.35929 * 113.99881 * 75.00331 * 14 11 10 16 16 C 1.38701 * 120.05648 * 269.95507 * 15 14 11 17 17 C 1.38153 * 119.95853 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07157 * 0.02562 * 17 16 15 19 19 C 1.38238 * 120.11971 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.04624 * 359.94924 * 19 18 17 21 21 Cl 1.73604 * 120.04140 * 180.02562 * 20 19 18 22 22 H 0.97002 * 120.00031 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47009 * 59.99891 * 9 7 2 24 24 H 1.08997 * 109.47068 * 300.00263 * 9 7 2 25 25 H 1.08995 * 109.47102 * 59.99658 * 10 9 7 26 26 H 1.09005 * 109.46990 * 300.00284 * 10 9 7 27 27 H 1.08003 * 120.02367 * 0.04181 * 16 15 14 28 28 H 1.08001 * 119.96476 * 180.29683 * 17 16 15 29 29 H 1.08006 * 119.93616 * 179.97438 * 18 17 16 30 30 H 1.08008 * 119.97717 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 16 1.3380 -5.2331 -0.0002 12 8 0.6644 -5.4193 -1.2376 13 8 0.6636 -5.4201 1.2364 14 8 2.4244 -6.2990 -0.0008 15 6 3.0442 -6.4574 1.1986 16 6 4.1735 -5.7111 1.5009 17 6 4.8021 -5.8741 2.7203 18 6 4.3068 -6.7808 3.6394 19 6 3.1821 -7.5270 3.3409 20 6 2.5489 -7.3675 2.1223 21 17 1.1360 -8.3042 1.7478 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8902 25 1 2.8717 -3.6045 0.8904 26 1 2.8717 -3.6045 -0.8895 27 1 4.5611 -5.0027 0.7836 28 1 5.6786 -5.2895 2.9577 29 1 4.8002 -6.9068 4.5919 30 1 2.7975 -8.2349 4.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324184.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -113.461947 kcal Electronic energy + Delta-G solvation = -18915.124785 eV Core-core repulsion = 15635.295394 eV Total energy + Delta-G solvation = -3279.829391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.19025 -39.20941 -38.35551 -37.63774 -37.24338 -35.94987 -33.25847 -32.00668 -31.30274 -27.71639 -24.82247 -24.18847 -23.47041 -21.63389 -19.65314 -19.11840 -18.58199 -18.12952 -17.76012 -16.68843 -16.54862 -16.51782 -15.55465 -15.20409 -14.98720 -14.72633 -14.48894 -14.30097 -13.83546 -13.72378 -13.39805 -13.26676 -13.09158 -12.93931 -12.83285 -12.57972 -12.45905 -12.29617 -12.13450 -12.00662 -11.75959 -11.14935 -10.64584 -10.14276 -9.86956 -8.25572 -6.40039 -1.09981 -0.04407 0.03515 0.86138 1.15226 1.43000 1.44927 1.55934 2.38238 2.40479 2.54964 2.88599 3.08443 3.44177 3.68957 3.87495 3.91287 4.02828 4.17886 4.21138 4.55173 4.65620 4.88234 4.91554 5.14967 5.21396 5.23669 5.26424 5.66879 5.67724 6.03903 6.73227 7.30373 8.86995 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.005157 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.571870 B = 5428.417744 C = 6164.372479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.024 3.976 10 C -0.604 4.604 11 S 2.584 3.416 12 O -0.975 6.975 13 O -0.969 6.969 14 O -0.662 6.662 15 C 0.036 3.964 16 C -0.124 4.124 17 C -0.090 4.090 18 C -0.076 4.076 19 C -0.102 4.102 20 C -0.042 4.042 21 Cl -0.066 7.066 22 H 0.267 0.733 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.940 -14.003 9.123 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.015 4.015 10 C -0.734 4.734 11 S 2.685 3.315 12 O -0.974 6.974 13 O -0.968 6.968 14 O -0.621 6.621 15 C -0.006 4.006 16 C -0.144 4.144 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.071 4.071 21 Cl -0.037 7.037 22 H 0.076 0.924 23 H 0.023 0.977 24 H 0.030 0.970 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.186 0.814 28 H 0.203 0.797 29 H 0.205 0.795 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.127 -14.613 8.865 21.551 hybrid contribution -0.420 1.140 -0.723 1.413 sum 12.707 -13.474 8.143 20.232 Atomic orbital electron populations 1.70110 1.08198 1.28386 1.50791 1.26140 0.95829 1.03963 0.94304 0.85283 0.78766 0.77457 0.78573 1.19812 1.20992 1.17657 1.21499 0.94147 0.90352 1.51650 0.90082 1.18810 0.93377 0.92686 0.96621 1.30569 1.13408 1.16370 1.13075 1.05731 0.75275 0.76870 0.73600 1.93526 1.71860 1.85230 1.46748 1.93570 1.73271 1.83974 1.45977 1.85756 1.64499 1.70710 1.41179 1.18359 0.97647 1.02981 0.81623 1.21874 0.92855 0.99186 1.00518 1.21747 1.00623 0.97637 0.90773 1.21927 0.93571 0.92604 1.01326 1.21495 0.96099 1.01242 0.93208 1.21529 0.91664 0.96881 0.97010 1.98387 1.39664 1.70993 1.94675 0.92385 0.97679 0.96971 0.82964 0.83261 0.81421 0.79737 0.79471 0.81328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.98 42.22 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.54 -29.09 9.11 25.60 0.23 -28.86 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.02 1.24 4.98 29.85 0.15 1.38 16 10 C -0.60 -23.12 5.40 71.98 0.39 -22.73 16 11 S 2.58 103.74 5.15 -56.49 -0.29 103.45 16 12 O -0.98 -46.23 18.09 -118.57 -2.15 -48.37 16 13 O -0.97 -41.73 15.18 -118.57 -1.80 -43.53 16 14 O -0.66 -22.52 9.51 -61.85 -0.59 -23.11 16 15 C 0.04 1.03 4.79 22.52 0.11 1.14 16 16 C -0.12 -2.51 8.46 22.36 0.19 -2.32 16 17 C -0.09 -1.15 10.04 22.26 0.22 -0.92 16 18 C -0.08 -0.86 10.04 22.28 0.22 -0.64 16 19 C -0.10 -1.80 9.83 22.27 0.22 -1.58 16 20 C -0.04 -1.13 5.66 22.41 0.13 -1.01 16 21 Cl -0.07 -2.03 27.26 -2.72 -0.07 -2.11 16 22 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.15 4.83 6.61 -2.39 -0.02 4.81 16 26 H 0.15 4.96 8.14 -2.39 -0.02 4.94 16 27 H 0.17 2.70 7.50 -2.91 -0.02 2.68 16 28 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 29 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 30 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -78.42 291.88 0.90 -77.52 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.16 Total: 3.38 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 2.32 Total: -55.28 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -110.47 SS G_CDS: -4.53 Total: -115.01 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 103.74 SS G_CDS: -0.29 Total: 103.45 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.11 kcal Total: -78.42 0.90 -77.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324184.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.940 kcal (2) G-P(sol) polarization free energy of solvation -78.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds