Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48491 * 109.47223 * 239.99478 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47372 * 119.99357 * 3 2 1 7 7 C 1.37881 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46962 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54050 * 68.38067 * 11 10 9 13 13 O 1.42097 * 110.54728 * 291.62691 * 11 10 9 14 14 O 1.52206 * 104.45132 * 180.02562 * 11 10 9 15 15 C 1.35921 * 113.99855 * 75.00118 * 14 11 10 16 16 C 1.38719 * 120.04348 * 269.72566 * 15 14 11 17 17 C 1.38148 * 119.95677 * 179.79038 * 16 15 14 18 18 C 1.38366 * 120.04312 * 0.46292 * 17 16 15 19 19 Cl 1.73602 * 119.95768 * 179.76847 * 18 17 16 20 20 C 1.38365 * 120.08112 * 359.79018 * 18 17 16 21 21 C 1.38140 * 120.04668 * 359.97438 * 20 18 17 22 22 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47347 * 59.99565 * 9 7 2 24 24 H 1.09006 * 109.46825 * 299.99329 * 9 7 2 25 25 H 1.09006 * 109.47227 * 59.99931 * 10 9 7 26 26 H 1.09000 * 109.47376 * 300.00107 * 10 9 7 27 27 H 1.08002 * 120.02201 * 0.02815 * 16 15 14 28 28 H 1.08004 * 119.97959 * 180.23694 * 17 16 15 29 29 H 1.08006 * 119.97490 * 179.97438 * 20 18 17 30 30 H 1.08004 * 120.02290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6647 -5.4194 1.2385 14 8 2.4249 -6.2989 0.0019 15 6 3.0445 -6.4560 1.2014 16 6 4.1767 -5.7126 1.5009 17 6 4.8025 -5.8706 2.7223 18 6 4.3063 -6.7766 3.6429 19 17 5.0980 -6.9776 5.1748 20 6 3.1801 -7.5228 3.3439 21 6 2.5487 -7.3641 2.1255 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8894 27 1 4.5664 -5.0079 0.7812 28 1 5.6818 -5.2891 2.9574 29 1 2.7945 -8.2298 4.0636 30 1 1.6699 -7.9471 1.8923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -94.540854 kcal Electronic energy + Delta-G solvation = -18584.505730 eV Core-core repulsion = 15305.496819 eV Total energy + Delta-G solvation = -3279.008911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10159 -38.43228 -36.83702 -36.57993 -35.72211 -33.99877 -31.68103 -31.17931 -30.22356 -25.78229 -23.66119 -23.44224 -21.77812 -20.37724 -18.29058 -17.74593 -17.16669 -17.00589 -16.42573 -15.43039 -15.20031 -14.65358 -14.56030 -13.96236 -13.81463 -13.56898 -13.30558 -12.81220 -12.56644 -12.41267 -11.86460 -11.81409 -11.78320 -11.64249 -11.50842 -11.13874 -11.11038 -11.03444 -10.49646 -10.45752 -9.80160 -9.46832 -9.30056 -8.92529 -8.54191 -6.16547 -4.22661 0.17669 0.86300 0.93624 1.75599 2.37842 3.13653 3.24625 3.29836 3.31209 3.97564 4.25143 4.33367 4.40343 4.42151 4.70135 4.92707 4.94768 5.18661 5.34734 5.51106 5.52931 5.56095 5.78292 5.85698 5.90082 6.35329 6.40643 7.22448 7.28447 7.75543 8.11414 8.80016 9.42361 10.94428 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004828 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.922958 B = 5798.266562 C = 7004.106692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.611 4.611 11 S 2.572 3.428 12 O -0.933 6.933 13 O -0.958 6.958 14 O -0.674 6.674 15 C 0.084 3.916 16 C -0.116 4.116 17 C -0.092 4.092 18 C -0.027 4.027 19 Cl -0.061 7.061 20 C -0.094 4.094 21 C -0.081 4.081 22 H 0.266 0.734 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 -14.517 6.936 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.742 4.742 11 S 2.672 3.328 12 O -0.932 6.932 13 O -0.957 6.957 14 O -0.632 6.632 15 C 0.042 3.958 16 C -0.136 4.136 17 C -0.110 4.110 18 C -0.054 4.054 19 Cl -0.032 7.032 20 C -0.113 4.113 21 C -0.102 4.102 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.172 0.828 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.589 -15.050 6.864 19.120 hybrid contribution 0.789 1.490 -0.071 1.687 sum 10.377 -13.561 6.793 18.377 Atomic orbital electron populations 1.69939 1.06128 1.27409 1.49268 1.25059 0.94974 0.99542 0.94795 0.86516 0.79498 0.82473 0.78710 1.20056 1.21037 1.20063 1.20938 0.93022 0.89658 1.52569 0.92036 1.18952 0.92483 0.90234 0.99092 1.30721 1.14294 1.18729 1.10502 1.06172 0.75139 0.76847 0.74599 1.93595 1.70107 1.84428 1.45037 1.93595 1.72535 1.83818 1.45702 1.85782 1.65100 1.72089 1.40227 1.18096 0.95120 1.00627 0.81986 1.21429 0.94434 0.99878 0.97888 1.20940 1.00794 0.97535 0.91752 1.21077 0.96126 0.99506 0.88726 1.98388 1.79454 1.96586 1.28767 1.20959 0.93945 0.99656 0.96712 1.21279 0.99798 0.96955 0.92125 0.92399 0.94644 0.94615 0.85926 0.85480 0.82842 0.83290 0.83469 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.64 16 10 C -0.61 -11.40 5.41 37.16 0.20 -11.19 16 11 S 2.57 46.93 5.17 -107.50 -0.56 46.37 16 12 O -0.93 -19.95 18.09 -67.03 -1.21 -21.16 16 13 O -0.96 -18.92 16.26 -67.04 -1.09 -20.01 16 14 O -0.67 -10.34 10.05 -51.82 -0.52 -10.86 16 15 C 0.08 1.14 4.79 -39.22 -0.19 0.95 16 16 C -0.12 -1.33 8.47 -39.44 -0.33 -1.66 16 17 C -0.09 -0.92 9.82 -39.57 -0.39 -1.31 16 18 C -0.03 -0.28 6.32 -39.49 -0.25 -0.52 16 19 Cl -0.06 -0.56 28.95 -51.86 -1.50 -2.06 16 20 C -0.09 -0.96 9.82 -39.57 -0.39 -1.35 16 21 C -0.08 -0.99 9.05 -39.44 -0.36 -1.35 16 22 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.12 2.00 6.62 -51.92 -0.34 1.66 16 26 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 27 H 0.15 1.46 7.52 -52.49 -0.39 1.06 16 28 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 294.69 15.07 4.44 4.44 Total: -1.00 -33.27 294.69 -9.79 -43.07 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -2.82 Total: -1.64 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -2.25 Total: -28.66 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.30 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -2.82 Total: -52.04 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 46.93 SS G_CDS: -0.56 Total: 46.37 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.27 -9.79 -43.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.471 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds