Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48491 * 109.47223 * 239.99478 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47372 * 119.99357 * 3 2 1 7 7 C 1.37881 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46962 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54050 * 68.38067 * 11 10 9 13 13 O 1.42097 * 110.54728 * 291.62691 * 11 10 9 14 14 O 1.52206 * 104.45132 * 180.02562 * 11 10 9 15 15 C 1.35921 * 113.99855 * 75.00118 * 14 11 10 16 16 C 1.38719 * 120.04348 * 269.72566 * 15 14 11 17 17 C 1.38148 * 119.95677 * 179.79038 * 16 15 14 18 18 C 1.38366 * 120.04312 * 0.46292 * 17 16 15 19 19 Cl 1.73602 * 119.95768 * 179.76847 * 18 17 16 20 20 C 1.38365 * 120.08112 * 359.79018 * 18 17 16 21 21 C 1.38140 * 120.04668 * 359.97438 * 20 18 17 22 22 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47347 * 59.99565 * 9 7 2 24 24 H 1.09006 * 109.46825 * 299.99329 * 9 7 2 25 25 H 1.09006 * 109.47227 * 59.99931 * 10 9 7 26 26 H 1.09000 * 109.47376 * 300.00107 * 10 9 7 27 27 H 1.08002 * 120.02201 * 0.02815 * 16 15 14 28 28 H 1.08004 * 119.97959 * 180.23694 * 17 16 15 29 29 H 1.08006 * 119.97490 * 179.97438 * 20 18 17 30 30 H 1.08004 * 120.02290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6647 -5.4194 1.2385 14 8 2.4249 -6.2989 0.0019 15 6 3.0445 -6.4560 1.2014 16 6 4.1767 -5.7126 1.5009 17 6 4.8025 -5.8706 2.7223 18 6 4.3063 -6.7766 3.6429 19 17 5.0980 -6.9776 5.1748 20 6 3.1801 -7.5228 3.3439 21 6 2.5487 -7.3641 2.1255 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8894 27 1 4.5664 -5.0079 0.7812 28 1 5.6818 -5.2891 2.9574 29 1 2.7945 -8.2298 4.0636 30 1 1.6699 -7.9471 1.8923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -116.399172 kcal Electronic energy + Delta-G solvation = -18585.453578 eV Core-core repulsion = 15305.496819 eV Total energy + Delta-G solvation = -3279.956759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.18965 -39.37116 -38.36618 -37.40192 -37.25835 -35.93014 -33.25165 -32.34995 -31.13849 -27.69442 -24.75733 -24.37896 -23.46531 -21.58587 -19.62437 -19.09875 -18.55077 -18.10843 -17.95275 -16.71913 -16.55820 -16.51613 -15.53077 -15.22411 -14.74051 -14.73096 -14.52115 -14.35739 -13.95407 -13.76385 -13.47264 -13.38811 -13.28322 -12.91206 -12.82985 -12.51776 -12.44919 -12.24791 -12.17766 -11.90445 -11.74337 -11.13681 -10.62483 -10.29764 -9.85133 -8.24676 -6.38559 -1.10654 -0.13685 0.04692 0.93384 1.12679 1.43177 1.46134 1.54207 2.27502 2.38610 2.54933 2.90141 3.09448 3.53398 3.59060 3.73542 3.93489 3.98041 4.09900 4.16648 4.53180 4.69671 4.76794 4.92193 4.97309 5.04128 5.24700 5.26426 5.50480 5.68932 6.05865 6.74533 7.31709 8.87434 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004828 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.922958 B = 5798.266562 C = 7004.106692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.023 3.977 10 C -0.607 4.607 11 S 2.597 3.403 12 O -0.973 6.973 13 O -0.978 6.978 14 O -0.662 6.662 15 C 0.041 3.959 16 C -0.118 4.118 17 C -0.090 4.090 18 C -0.027 4.027 19 Cl -0.048 7.048 20 C -0.093 4.093 21 C -0.095 4.095 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.012 0.988 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.800 -14.450 8.032 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.097 0.903 9 C -0.015 4.015 10 C -0.737 4.737 11 S 2.698 3.302 12 O -0.971 6.971 13 O -0.977 6.977 14 O -0.621 6.621 15 C 0.000 4.000 16 C -0.138 4.138 17 C -0.108 4.108 18 C -0.055 4.055 19 Cl -0.019 7.019 20 C -0.111 4.111 21 C -0.115 4.115 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.030 0.970 25 H 0.168 0.832 26 H 0.169 0.831 27 H 0.190 0.810 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.195 -14.987 7.955 20.896 hybrid contribution 0.068 1.335 -0.283 1.367 sum 12.264 -13.652 7.672 19.891 Atomic orbital electron populations 1.70092 1.08086 1.28385 1.50799 1.26087 0.95800 1.03795 0.94370 0.85378 0.78133 0.77367 0.79468 1.18851 1.21209 1.18636 1.21476 0.94105 0.90520 1.51638 0.90262 1.18807 0.93400 0.92611 0.96732 1.30580 1.13441 1.16583 1.13105 1.05312 0.74958 0.76616 0.73293 1.93539 1.71778 1.85110 1.46658 1.93550 1.73529 1.84185 1.46392 1.85746 1.64486 1.70553 1.41333 1.18590 0.96614 1.02901 0.81914 1.21717 0.93629 0.99698 0.98798 1.21286 1.01277 0.97343 0.90941 1.21293 0.95922 0.99031 0.89217 1.98399 1.79113 1.96481 1.27895 1.21236 0.93714 0.99856 0.96313 1.21514 1.00301 0.97004 0.92684 0.92415 0.97352 0.96994 0.83231 0.83064 0.80954 0.80604 0.81018 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.54 -28.82 9.11 25.60 0.23 -28.59 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.61 -22.12 5.41 71.98 0.39 -21.73 16 11 S 2.60 95.25 5.17 -56.49 -0.29 94.96 16 12 O -0.97 -42.58 18.09 -118.57 -2.15 -44.72 16 13 O -0.98 -39.07 16.26 -118.57 -1.93 -41.00 16 14 O -0.66 -19.91 10.05 -61.75 -0.62 -20.53 16 15 C 0.04 1.07 4.79 22.50 0.11 1.18 16 16 C -0.12 -2.42 8.47 22.36 0.19 -2.23 16 17 C -0.09 -1.53 9.82 22.28 0.22 -1.31 16 18 C -0.03 -0.48 6.32 22.33 0.14 -0.34 16 19 Cl -0.05 -0.75 28.95 -2.72 -0.08 -0.83 16 20 C -0.09 -1.69 9.82 22.28 0.22 -1.47 16 21 C -0.09 -2.19 9.05 22.36 0.20 -1.99 16 22 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.15 4.58 6.62 -2.39 -0.02 4.56 16 26 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16 27 H 0.17 2.73 7.52 -2.91 -0.02 2.71 16 28 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 29 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -72.43 294.69 0.72 -71.71 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.16 Total: 6.59 kcal Atomic # 6 Polarization: -57.12 SS G_CDS: 2.31 Total: -54.80 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -101.56 SS G_CDS: -4.69 Total: -106.26 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 95.25 SS G_CDS: -0.29 Total: 94.96 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -72.43 0.72 -71.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.691 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds