Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35899 * 114.00040 * 75.00388 * 14 11 10 16 16 C 1.38764 * 120.04619 * 269.72301 * 15 14 11 17 17 C 1.38130 * 119.96865 * 179.74743 * 16 15 14 18 18 C 1.38262 * 120.07072 * 0.54811 * 17 16 15 19 19 C 1.38371 * 120.09681 * 359.70295 * 18 17 16 20 20 Cl 1.73594 * 119.98542 * 180.02562 * 19 18 17 21 21 C 1.38283 * 120.02792 * 0.02687 * 19 18 17 22 22 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 24 24 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 25 25 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 26 26 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 27 27 H 1.08007 * 120.01582 * 0.02562 * 16 15 14 28 28 H 1.08011 * 119.96285 * 180.25362 * 17 16 15 29 29 H 1.08005 * 119.95498 * 179.72394 * 18 17 16 30 30 H 1.07993 * 120.03192 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0437 -6.4566 1.1991 16 6 4.1760 -5.7131 1.5000 17 6 4.8006 -5.8710 2.7219 18 6 4.3053 -6.7773 3.6411 19 6 3.1793 -7.5239 3.3419 20 17 2.5596 -8.6605 4.4985 21 6 2.5476 -7.3651 2.1221 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6042 -0.8904 27 1 4.5663 -5.0080 0.7809 28 1 5.6796 -5.2893 2.9576 29 1 4.7977 -6.9025 4.5941 30 1 1.6686 -7.9475 1.8888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = -94.039809 kcal Electronic energy + Delta-G solvation = -18627.168830 eV Core-core repulsion = 15348.181646 eV Total energy + Delta-G solvation = -3278.987184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.10683 -38.40397 -36.82648 -36.61508 -35.71633 -34.00108 -31.47451 -31.11508 -30.47424 -25.78205 -23.80575 -23.27438 -21.77431 -20.41387 -18.33194 -17.72290 -17.16716 -16.70751 -16.42957 -15.52981 -15.34422 -14.72026 -14.59164 -14.13130 -13.78092 -13.54344 -13.29362 -12.63367 -12.54511 -12.25215 -11.86397 -11.80565 -11.76267 -11.61121 -11.53774 -11.25709 -11.14188 -11.04224 -10.47455 -10.45925 -9.81234 -9.36207 -9.21782 -9.03663 -8.55365 -6.17259 -4.23260 0.21018 0.76854 0.99583 1.74864 2.40294 3.14532 3.22263 3.29679 3.32502 3.97892 4.25245 4.32773 4.41362 4.60326 4.64051 4.81010 4.95077 5.18100 5.25771 5.46191 5.53601 5.70478 5.78001 5.86210 5.89443 6.35215 6.41458 7.22479 7.28175 7.75308 8.10867 8.79949 9.41915 10.93821 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.004472 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.570196 B = 6259.211238 C = 6824.567548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.610 4.610 11 S 2.571 3.429 12 O -0.957 6.957 13 O -0.933 6.933 14 O -0.673 6.673 15 C 0.092 3.908 16 C -0.124 4.124 17 C -0.087 4.087 18 C -0.099 4.099 19 C -0.021 4.021 20 Cl -0.057 7.057 21 C -0.088 4.088 22 H 0.265 0.735 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 -14.344 7.027 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.742 4.742 11 S 2.671 3.329 12 O -0.955 6.955 13 O -0.931 6.931 14 O -0.631 6.631 15 C 0.050 3.950 16 C -0.144 4.144 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.048 4.048 20 Cl -0.028 7.028 21 C -0.108 4.108 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.169 0.831 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.748 -14.970 6.918 19.156 hybrid contribution 0.587 1.374 -0.121 1.499 sum 10.336 -13.595 6.797 18.381 Atomic orbital electron populations 1.69961 1.06129 1.27185 1.49447 1.25066 0.94975 0.99572 0.94822 0.86403 0.79889 0.83119 0.77809 1.19637 1.20763 1.20772 1.21014 0.93091 0.89623 1.52317 0.91924 1.18968 0.92505 0.90261 0.99122 1.30714 1.14278 1.18659 1.10514 1.06223 0.75165 0.76888 0.74639 1.93604 1.72458 1.83779 1.45693 1.93596 1.70085 1.84436 1.44983 1.85781 1.65182 1.72150 1.39965 1.17790 0.95095 1.00291 0.81797 1.21607 0.94373 0.99713 0.98727 1.21023 1.00156 0.97444 0.91940 1.21265 0.94672 0.95129 1.00790 1.20622 0.96708 0.96126 0.91356 1.98388 1.86985 1.59143 1.58247 1.21143 1.00247 0.97885 0.91566 0.92509 0.94622 0.94600 0.85891 0.85478 0.83119 0.83274 0.83822 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.61 -11.40 5.41 37.16 0.20 -11.20 16 11 S 2.57 47.62 5.17 -107.50 -0.56 47.06 16 12 O -0.96 -19.31 16.26 -67.04 -1.09 -20.40 16 13 O -0.93 -20.15 18.09 -67.03 -1.21 -21.37 16 14 O -0.67 -10.56 10.05 -51.75 -0.52 -11.08 16 15 C 0.09 1.29 4.79 -39.22 -0.19 1.11 16 16 C -0.12 -1.39 8.47 -39.43 -0.33 -1.73 16 17 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 18 C -0.10 -0.91 9.83 -39.52 -0.39 -1.30 16 19 C -0.02 -0.24 6.32 -39.52 -0.25 -0.49 16 20 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 16 21 C -0.09 -1.17 8.83 -39.40 -0.35 -1.52 16 22 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.12 2.00 6.62 -51.92 -0.34 1.65 16 26 H 0.13 2.10 8.14 -51.93 -0.42 1.67 16 27 H 0.15 1.40 7.52 -52.48 -0.39 1.00 16 28 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 29 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -33.56 294.70 -9.79 -43.35 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -2.82 Total: -1.87 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -2.25 Total: -28.50 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.82 Total: -52.84 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.56 Total: 47.06 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.56 -9.79 -43.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.691 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds