Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35899 * 114.00040 * 75.00388 * 14 11 10 16 16 C 1.38764 * 120.04619 * 269.72301 * 15 14 11 17 17 C 1.38130 * 119.96865 * 179.74743 * 16 15 14 18 18 C 1.38262 * 120.07072 * 0.54811 * 17 16 15 19 19 C 1.38371 * 120.09681 * 359.70295 * 18 17 16 20 20 Cl 1.73594 * 119.98542 * 180.02562 * 19 18 17 21 21 C 1.38283 * 120.02792 * 0.02687 * 19 18 17 22 22 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 24 24 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 25 25 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 26 26 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 27 27 H 1.08007 * 120.01582 * 0.02562 * 16 15 14 28 28 H 1.08011 * 119.96285 * 180.25362 * 17 16 15 29 29 H 1.08005 * 119.95498 * 179.72394 * 18 17 16 30 30 H 1.07993 * 120.03192 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0437 -6.4566 1.1991 16 6 4.1760 -5.7131 1.5000 17 6 4.8006 -5.8710 2.7219 18 6 4.3053 -6.7773 3.6411 19 6 3.1793 -7.5239 3.3419 20 17 2.5596 -8.6605 4.4985 21 6 2.5476 -7.3651 2.1221 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6042 -0.8904 27 1 4.5663 -5.0080 0.7809 28 1 5.6796 -5.2893 2.9576 29 1 4.7977 -6.9025 4.5941 30 1 1.6686 -7.9475 1.8888 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = -116.494046 kcal Electronic energy + Delta-G solvation = -18628.142519 eV Core-core repulsion = 15348.181646 eV Total energy + Delta-G solvation = -3279.960873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20393 -39.34629 -38.38388 -37.46627 -37.27615 -35.93273 -33.23983 -32.08373 -31.38176 -27.69666 -24.86676 -24.26797 -23.42718 -21.62881 -19.66331 -19.13086 -18.56475 -18.11579 -17.63343 -16.74857 -16.58757 -16.52801 -15.84118 -15.22617 -14.87159 -14.72485 -14.52238 -14.37958 -13.89808 -13.76856 -13.41565 -13.32555 -13.05177 -12.94834 -12.80578 -12.54217 -12.45692 -12.26839 -12.11362 -12.06523 -11.74719 -11.12679 -10.64338 -10.16601 -9.93255 -8.24719 -6.38617 -1.10218 -0.11968 0.02098 0.85371 1.17172 1.43825 1.44355 1.57413 2.31354 2.38721 2.53900 2.88556 3.09776 3.54322 3.65897 3.81783 3.90421 3.94543 4.07660 4.14932 4.46975 4.69133 4.83007 4.88442 5.06555 5.11222 5.24503 5.25949 5.57510 5.69430 6.05537 6.75178 7.31908 8.87945 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.004472 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.570196 B = 6259.211238 C = 6824.567548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.022 3.978 10 C -0.602 4.602 11 S 2.593 3.407 12 O -0.980 6.980 13 O -0.973 6.973 14 O -0.663 6.663 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.077 4.077 18 C -0.085 4.085 19 C -0.033 4.033 20 Cl -0.053 7.053 21 C -0.110 4.110 22 H 0.267 0.733 23 H 0.007 0.993 24 H 0.011 0.989 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.172 0.828 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -13.753 8.285 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.100 0.900 9 C -0.017 4.017 10 C -0.733 4.733 11 S 2.694 3.306 12 O -0.979 6.979 13 O -0.972 6.972 14 O -0.622 6.622 15 C 0.007 3.993 16 C -0.147 4.147 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.060 4.060 20 Cl -0.024 7.024 21 C -0.131 4.131 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.029 0.971 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.190 0.810 28 H 0.210 0.790 29 H 0.195 0.805 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.137 -14.388 8.168 21.126 hybrid contribution -0.387 1.063 -0.399 1.199 sum 12.750 -13.326 7.769 20.012 Atomic orbital electron populations 1.70112 1.08159 1.28260 1.50977 1.26112 0.95801 1.03895 0.94399 0.85254 0.79352 0.77965 0.77607 1.17523 1.20741 1.20509 1.21538 0.94178 0.90370 1.51349 0.90044 1.18827 0.93432 0.92702 0.96702 1.30548 1.13360 1.16106 1.13300 1.05446 0.75062 0.76833 0.73269 1.93557 1.73585 1.84250 1.46487 1.93535 1.71846 1.85196 1.46593 1.85741 1.64580 1.70715 1.41123 1.18273 0.96822 1.02608 0.81581 1.22014 0.93228 0.99302 1.00131 1.21573 1.00640 0.96823 0.90418 1.21765 0.93184 0.93453 1.02041 1.20813 0.97554 0.96845 0.90826 1.98388 1.87138 1.59111 1.57776 1.21252 1.00650 0.98467 0.92725 0.92446 0.97433 0.97053 0.82929 0.82917 0.81047 0.79016 0.80476 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.89 13.29 21.45 0.28 -55.61 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -28.45 9.11 25.60 0.23 -28.22 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.12 4.98 29.85 0.15 1.27 16 10 C -0.60 -21.92 5.41 71.98 0.39 -21.53 16 11 S 2.59 97.63 5.17 -56.49 -0.29 97.34 16 12 O -0.98 -40.71 16.26 -118.57 -1.93 -42.64 16 13 O -0.97 -43.58 18.09 -118.57 -2.15 -45.73 16 14 O -0.66 -20.71 10.05 -61.51 -0.62 -21.33 16 15 C 0.05 1.32 4.79 22.50 0.11 1.42 16 16 C -0.13 -2.44 8.47 22.37 0.19 -2.25 16 17 C -0.08 -1.02 10.04 22.25 0.22 -0.79 16 18 C -0.09 -1.24 9.83 22.31 0.22 -1.02 16 19 C -0.03 -0.70 6.32 22.31 0.14 -0.56 16 20 Cl -0.05 -1.04 28.95 -2.72 -0.08 -1.11 16 21 C -0.11 -2.90 8.83 22.39 0.20 -2.71 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 25 H 0.15 4.58 6.62 -2.39 -0.02 4.56 16 26 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16 27 H 0.17 2.48 7.52 -2.91 -0.02 2.46 16 28 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -74.90 294.70 0.72 -74.17 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.16 Total: 5.13 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 2.31 Total: -54.13 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.28 Total: -55.61 kcal Atomic # 8 Polarization: -105.00 SS G_CDS: -4.69 Total: -109.69 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 97.63 SS G_CDS: -0.29 Total: 97.34 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.11 kcal Total: -74.90 0.72 -74.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.321 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds