Wall clock time and date at job start Tue Mar 31 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 120.00251 * 2 1 4 4 C 1.38213 * 120.00170 * 179.78325 * 3 2 1 5 5 C 1.38256 * 120.00085 * 0.44846 * 4 3 2 6 6 C 1.38219 * 119.99535 * 359.80703 * 5 4 3 7 7 C 1.38216 * 119.99963 * 180.27284 * 2 1 3 8 8 C 1.50702 * 119.99805 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.47322 * 26.30040 * 8 7 2 10 10 C 1.53004 * 109.46993 * 266.29511 * 8 7 2 11 11 C 1.52999 * 109.47382 * 299.50047 * 10 8 7 12 12 C 1.53003 * 109.46940 * 59.50485 * 10 8 7 13 13 N 1.46899 * 109.47173 * 146.29851 * 8 7 2 14 14 C 1.46904 * 110.99893 * 302.49356 * 13 8 7 15 15 C 1.46900 * 111.00403 * 178.53578 * 13 8 7 16 16 C 1.52999 * 109.47294 * 195.64470 * 15 13 8 17 17 C 1.52998 * 109.47176 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47094 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99707 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99654 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47285 * 90.00252 * 22 20 18 24 24 H 1.48501 * 109.47029 * 210.00203 * 22 20 18 25 25 H 1.48497 * 109.47132 * 329.99981 * 22 20 18 26 26 H 1.09004 * 109.47343 * 267.34574 * 1 2 3 27 27 H 1.09008 * 109.47299 * 147.34637 * 1 2 3 28 28 H 1.09004 * 109.47133 * 27.34456 * 1 2 3 29 29 H 1.08002 * 119.99996 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.00140 * 180.27104 * 4 3 2 31 31 H 1.08000 * 120.00313 * 179.82937 * 5 4 3 32 32 H 1.08000 * 119.99702 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.46647 * 179.49873 * 10 8 7 34 34 H 1.09002 * 109.46658 * 60.00081 * 11 10 8 35 35 H 1.08999 * 109.47018 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47119 * 300.00133 * 11 10 8 37 37 H 1.08997 * 109.46780 * 180.98767 * 12 10 8 38 38 H 1.09000 * 109.46928 * 300.99114 * 12 10 8 39 39 H 1.09005 * 109.46738 * 60.99417 * 12 10 8 40 40 H 1.09001 * 109.47388 * 59.99549 * 14 13 8 41 41 H 1.08998 * 109.47134 * 179.97438 * 14 13 8 42 42 H 1.09000 * 109.47178 * 299.99879 * 14 13 8 43 43 H 1.08996 * 109.47033 * 315.64583 * 15 13 8 44 44 H 1.09001 * 109.46736 * 75.64553 * 15 13 8 45 45 H 1.08998 * 109.46969 * 300.00531 * 16 15 13 46 46 H 1.09006 * 109.46898 * 59.99948 * 16 15 13 47 47 H 1.08998 * 109.47071 * 300.00649 * 17 16 15 48 48 H 1.09001 * 109.46734 * 60.00156 * 17 16 15 49 49 H 0.96998 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 0.0000 -0.0003 6 6 3.5805 -1.1970 -0.0057 7 6 2.1980 -1.1970 -0.0057 8 6 1.4444 -2.5020 -0.0113 9 1 0.4647 -2.3540 -0.4656 10 6 1.2707 -2.9968 1.4260 11 6 2.6459 -3.2166 2.0595 12 6 0.4975 -1.9532 2.2347 13 7 2.1971 -3.4988 -0.7846 14 6 2.4348 -3.0306 -2.1566 15 6 1.5083 -4.7962 -0.7830 16 6 2.4756 -5.8878 -1.2451 17 6 1.7583 -7.2393 -1.2428 18 6 2.7113 -8.3145 -1.6974 19 1 3.7271 -8.0596 -1.9611 20 6 2.2867 -9.6240 -1.7755 21 7 1.0499 -9.9345 -1.4538 22 14 3.4681 -10.9570 -2.3383 23 1 4.1784 -11.5182 -1.1611 24 1 2.7087 -12.0363 -3.0191 25 1 4.4565 -10.3761 -3.2822 26 1 -0.3634 -0.0476 1.0266 27 1 -0.3634 -0.8653 -0.5545 28 1 -0.3633 0.9129 -0.4721 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 0.0090 31 1 5.3517 -0.0001 0.0004 32 1 4.1205 -2.1323 -0.0090 33 1 0.7179 -3.9363 1.4225 34 1 3.1986 -2.2771 2.0630 35 1 2.5221 -3.5687 3.0837 36 1 3.1967 -3.9601 1.4834 37 1 0.3890 -2.2978 3.2630 38 1 1.0416 -1.0087 2.2234 39 1 -0.4889 -1.8096 1.7936 40 1 3.0075 -2.1035 -2.1302 41 1 2.9942 -3.7872 -2.7069 42 1 1.4796 -2.8536 -2.6508 43 1 1.1607 -5.0218 0.2252 44 1 0.6556 -4.7557 -1.4607 45 1 2.8232 -5.6622 -2.2532 46 1 3.3284 -5.9283 -0.5673 47 1 1.4111 -7.4645 -0.2344 48 1 0.9054 -7.1990 -1.9203 49 1 0.7510 -10.8556 -1.5092 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112357556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:51 Heat of formation + Delta-G solvation = 9.097257 kcal Electronic energy + Delta-G solvation = -23948.615264 eV Core-core repulsion = 20874.831458 eV Total energy + Delta-G solvation = -3073.783806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43333 -37.67368 -34.96296 -33.42083 -32.80499 -31.62010 -30.40262 -27.58719 -27.05924 -26.87361 -26.23137 -24.04258 -22.25688 -21.68291 -21.23600 -19.88365 -18.84151 -16.54095 -16.28238 -15.93528 -15.67717 -15.20772 -14.67121 -14.45431 -14.18825 -13.87606 -13.84840 -13.39667 -13.10550 -12.84402 -12.55748 -12.44465 -12.34151 -12.27698 -12.18740 -11.77013 -11.66820 -11.50700 -11.23692 -11.15702 -10.98834 -10.80181 -10.72764 -10.71743 -10.51622 -10.42626 -10.09011 -9.51004 -9.28767 -9.02809 -8.70064 -8.55762 -8.31062 -7.98855 -5.96588 -3.98271 1.33693 1.41330 3.34251 3.40259 3.43943 3.74035 4.13093 4.49722 4.63705 4.80449 4.91116 5.01580 5.07469 5.10743 5.19120 5.31098 5.39223 5.39964 5.48656 5.50961 5.63387 5.66445 5.70545 5.75463 5.77724 5.83752 5.88518 5.99890 6.01996 6.03809 6.14176 6.15085 6.19127 6.24406 6.35461 6.46000 6.49494 6.54546 6.59507 6.65626 6.76468 6.87673 7.03176 7.18480 7.42460 7.46570 7.72760 7.88198 8.04451 8.48104 9.09101 9.65540 11.14901 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.003346 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.450363 B = 8367.297291 C = 8709.596750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.065 4.065 8 C 0.123 3.877 9 H 0.049 0.951 10 C -0.087 4.087 11 C -0.142 4.142 12 C -0.151 4.151 13 N -0.532 5.532 14 C 0.022 3.978 15 C 0.051 3.949 16 C -0.101 4.101 17 C 0.022 3.978 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 22.932 5.046 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.105 4.105 7 C -0.066 4.066 8 C 0.015 3.985 9 H 0.066 0.934 10 C -0.105 4.105 11 C -0.199 4.199 12 C -0.208 4.208 13 N -0.256 5.256 14 C -0.127 4.127 15 C -0.076 4.076 16 C -0.139 4.139 17 C -0.016 4.016 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.852 22.712 5.271 23.331 hybrid contribution -0.199 -0.658 -0.766 1.029 sum 0.654 22.054 4.506 22.519 Atomic orbital electron populations 1.21067 0.91744 1.02471 1.02717 1.19700 0.95775 0.92633 1.00246 1.20906 0.94237 0.97086 1.02292 1.21063 0.94259 0.97897 1.00926 1.21167 0.99752 0.92638 1.01644 1.21185 0.93737 0.98399 0.97209 1.19584 0.93914 0.93435 0.99644 1.20668 0.94233 0.88985 0.94655 0.93363 1.21164 0.97719 0.98776 0.92862 1.21816 0.96329 1.02218 0.99510 1.22053 0.99716 0.99368 0.99674 1.62043 1.47916 1.02706 1.12901 1.22450 0.99886 1.01042 0.89273 1.22408 0.95980 0.88099 1.01110 1.21606 0.97903 0.94792 0.99602 1.19068 0.95561 0.89910 0.97021 1.21256 0.97684 0.92300 1.44267 0.92715 1.25024 0.95118 0.98769 0.95606 1.69965 1.16047 1.18581 1.49061 0.86613 0.81036 0.81631 0.78842 1.20678 1.21299 1.19891 0.90561 0.91312 0.92069 0.86612 0.86667 0.86442 0.84671 0.90368 0.92779 0.93689 0.90963 0.92777 0.92242 0.92794 0.91697 0.90788 0.96306 0.90747 0.95414 0.93581 0.92708 0.96696 0.96937 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.43 36.00 0.30 -0.82 16 2 C -0.08 -0.90 4.79 -104.63 -0.50 -1.40 16 3 C -0.13 -1.27 9.69 -39.58 -0.38 -1.66 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.09 -1.04 5.74 -39.58 -0.23 -1.27 16 7 C -0.07 -0.78 2.88 -104.62 -0.30 -1.08 16 8 C 0.12 1.57 1.32 -68.86 -0.09 1.47 16 9 H 0.05 0.63 5.85 -51.93 -0.30 0.33 16 10 C -0.09 -1.07 2.38 -90.62 -0.22 -1.28 16 11 C -0.14 -1.79 8.25 37.16 0.31 -1.48 16 12 C -0.15 -1.56 7.43 37.16 0.28 -1.29 16 13 N -0.53 -7.77 2.98 -236.28 -0.70 -8.47 16 14 C 0.02 0.30 8.93 60.07 0.54 0.84 16 15 C 0.05 0.88 4.82 -3.82 -0.02 0.86 16 16 C -0.10 -2.10 5.20 -26.73 -0.14 -2.24 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 22 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 26 H 0.08 0.64 5.80 -51.93 -0.30 0.33 16 27 H 0.07 0.67 6.01 -51.92 -0.31 0.35 16 28 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.14 1.73 7.24 -52.49 -0.38 1.35 16 33 H 0.08 1.05 6.10 -51.93 -0.32 0.74 16 34 H 0.05 0.66 5.99 -51.93 -0.31 0.35 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.04 7.59 -51.93 -0.39 0.64 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.63 5.85 -51.93 -0.30 0.32 16 39 H 0.05 0.51 6.81 -51.93 -0.35 0.16 16 40 H 0.06 0.85 5.95 -51.93 -0.31 0.54 16 41 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 1.28 5.58 -51.93 -0.29 0.99 16 44 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 45 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 46 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -29.84 363.82 -9.75 -39.59 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.45 Total: -1.05 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.80 Total: -25.94 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.03 Total: -34.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.84 -9.75 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112357556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.683 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds