Wall clock time and date at job start Tue Mar 31 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 120.00251 * 2 1 4 4 C 1.38213 * 120.00170 * 179.78325 * 3 2 1 5 5 C 1.38256 * 120.00085 * 0.44846 * 4 3 2 6 6 C 1.38219 * 119.99535 * 359.80703 * 5 4 3 7 7 C 1.38216 * 119.99963 * 180.27284 * 2 1 3 8 8 C 1.50702 * 119.99805 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.47322 * 26.30040 * 8 7 2 10 10 C 1.53004 * 109.46993 * 266.29511 * 8 7 2 11 11 C 1.52999 * 109.47382 * 299.50047 * 10 8 7 12 12 C 1.53003 * 109.46940 * 59.50485 * 10 8 7 13 13 N 1.46899 * 109.47173 * 146.29851 * 8 7 2 14 14 C 1.46904 * 110.99893 * 302.49356 * 13 8 7 15 15 C 1.46900 * 111.00403 * 178.53578 * 13 8 7 16 16 C 1.52999 * 109.47294 * 195.64470 * 15 13 8 17 17 C 1.52998 * 109.47176 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47094 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99707 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99654 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47285 * 90.00252 * 22 20 18 24 24 H 1.48501 * 109.47029 * 210.00203 * 22 20 18 25 25 H 1.48497 * 109.47132 * 329.99981 * 22 20 18 26 26 H 1.09004 * 109.47343 * 267.34574 * 1 2 3 27 27 H 1.09008 * 109.47299 * 147.34637 * 1 2 3 28 28 H 1.09004 * 109.47133 * 27.34456 * 1 2 3 29 29 H 1.08002 * 119.99996 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.00140 * 180.27104 * 4 3 2 31 31 H 1.08000 * 120.00313 * 179.82937 * 5 4 3 32 32 H 1.08000 * 119.99702 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.46647 * 179.49873 * 10 8 7 34 34 H 1.09002 * 109.46658 * 60.00081 * 11 10 8 35 35 H 1.08999 * 109.47018 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47119 * 300.00133 * 11 10 8 37 37 H 1.08997 * 109.46780 * 180.98767 * 12 10 8 38 38 H 1.09000 * 109.46928 * 300.99114 * 12 10 8 39 39 H 1.09005 * 109.46738 * 60.99417 * 12 10 8 40 40 H 1.09001 * 109.47388 * 59.99549 * 14 13 8 41 41 H 1.08998 * 109.47134 * 179.97438 * 14 13 8 42 42 H 1.09000 * 109.47178 * 299.99879 * 14 13 8 43 43 H 1.08996 * 109.47033 * 315.64583 * 15 13 8 44 44 H 1.09001 * 109.46736 * 75.64553 * 15 13 8 45 45 H 1.08998 * 109.46969 * 300.00531 * 16 15 13 46 46 H 1.09006 * 109.46898 * 59.99948 * 16 15 13 47 47 H 1.08998 * 109.47071 * 300.00649 * 17 16 15 48 48 H 1.09001 * 109.46734 * 60.00156 * 17 16 15 49 49 H 0.96998 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 0.0000 -0.0003 6 6 3.5805 -1.1970 -0.0057 7 6 2.1980 -1.1970 -0.0057 8 6 1.4444 -2.5020 -0.0113 9 1 0.4647 -2.3540 -0.4656 10 6 1.2707 -2.9968 1.4260 11 6 2.6459 -3.2166 2.0595 12 6 0.4975 -1.9532 2.2347 13 7 2.1971 -3.4988 -0.7846 14 6 2.4348 -3.0306 -2.1566 15 6 1.5083 -4.7962 -0.7830 16 6 2.4756 -5.8878 -1.2451 17 6 1.7583 -7.2393 -1.2428 18 6 2.7113 -8.3145 -1.6974 19 1 3.7271 -8.0596 -1.9611 20 6 2.2867 -9.6240 -1.7755 21 7 1.0499 -9.9345 -1.4538 22 14 3.4681 -10.9570 -2.3383 23 1 4.1784 -11.5182 -1.1611 24 1 2.7087 -12.0363 -3.0191 25 1 4.4565 -10.3761 -3.2822 26 1 -0.3634 -0.0476 1.0266 27 1 -0.3634 -0.8653 -0.5545 28 1 -0.3633 0.9129 -0.4721 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 0.0090 31 1 5.3517 -0.0001 0.0004 32 1 4.1205 -2.1323 -0.0090 33 1 0.7179 -3.9363 1.4225 34 1 3.1986 -2.2771 2.0630 35 1 2.5221 -3.5687 3.0837 36 1 3.1967 -3.9601 1.4834 37 1 0.3890 -2.2978 3.2630 38 1 1.0416 -1.0087 2.2234 39 1 -0.4889 -1.8096 1.7936 40 1 3.0075 -2.1035 -2.1302 41 1 2.9942 -3.7872 -2.7069 42 1 1.4796 -2.8536 -2.6508 43 1 1.1607 -5.0218 0.2252 44 1 0.6556 -4.7557 -1.4607 45 1 2.8232 -5.6622 -2.2532 46 1 3.3284 -5.9283 -0.5673 47 1 1.4111 -7.4645 -0.2344 48 1 0.9054 -7.1990 -1.9203 49 1 0.7510 -10.8556 -1.5092 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112357556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:51 Heat of formation + Delta-G solvation = -4.567281 kcal Electronic energy + Delta-G solvation = -23949.207803 eV Core-core repulsion = 20874.831458 eV Total energy + Delta-G solvation = -3074.376345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36585 -38.73629 -36.32318 -35.19762 -33.61793 -33.27348 -31.56166 -28.68159 -28.46399 -27.90794 -27.28918 -25.59224 -23.58986 -22.68678 -22.32213 -21.46281 -19.85610 -18.44763 -17.40064 -17.14291 -16.63271 -16.47686 -16.25131 -15.74000 -15.27841 -14.93652 -14.92389 -14.66391 -14.30890 -13.93925 -13.74623 -13.66019 -13.57413 -13.27876 -13.17474 -13.13049 -13.04393 -12.67492 -12.59327 -12.51346 -12.42025 -12.35363 -11.99081 -11.80930 -11.72127 -11.60171 -11.48041 -11.35543 -11.07295 -10.96504 -10.54215 -9.51919 -9.37973 -9.20665 -8.19633 -6.30337 0.52647 0.59884 1.39705 1.41175 1.52314 2.41038 2.86890 3.01185 3.13440 3.68081 4.02856 4.04520 4.10598 4.12184 4.19886 4.29428 4.32221 4.39576 4.47560 4.53979 4.61180 4.64473 4.71402 4.76782 4.80352 4.87115 4.91585 4.92738 4.95919 5.01001 5.04241 5.08662 5.11941 5.13827 5.24405 5.28618 5.29910 5.37938 5.48143 5.51299 5.57925 5.68540 5.73075 5.76184 5.81946 5.87564 6.12598 6.23025 6.26127 6.31308 6.86446 7.38700 8.92309 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.003346 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.450363 B = 8367.297291 C = 8709.596750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.140 4.140 6 C -0.100 4.100 7 C -0.076 4.076 8 C 0.127 3.873 9 H 0.048 0.952 10 C -0.088 4.088 11 C -0.135 4.135 12 C -0.143 4.143 13 N -0.532 5.532 14 C 0.026 3.974 15 C 0.065 3.935 16 C -0.084 4.084 17 C 0.027 3.973 18 C -0.541 4.541 19 H 0.058 0.942 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.264 1.264 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.046 0.954 46 H 0.051 0.949 47 H -0.008 1.008 48 H -0.012 1.012 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 24.750 5.117 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.158 4.158 6 C -0.118 4.118 7 C -0.077 4.077 8 C 0.019 3.981 9 H 0.065 0.935 10 C -0.107 4.107 11 C -0.192 4.192 12 C -0.200 4.200 13 N -0.255 5.255 14 C -0.122 4.122 15 C -0.063 4.063 16 C -0.122 4.122 17 C -0.010 4.010 18 C -0.579 4.579 19 H 0.076 0.924 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.188 1.188 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.010 0.990 48 H 0.006 0.994 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.569 24.549 5.345 25.174 hybrid contribution -0.426 -1.159 -0.773 1.457 sum 1.143 23.390 4.572 23.861 Atomic orbital electron populations 1.21083 0.90687 1.02849 1.03277 1.19903 0.96666 0.92466 0.99867 1.21215 0.94527 0.97631 1.01377 1.21380 0.94494 0.98511 0.99704 1.21367 1.00595 0.92490 1.01391 1.21119 0.93845 0.98443 0.98430 1.19484 0.93884 0.93201 1.01117 1.20666 0.94082 0.89024 0.94339 0.93458 1.21170 0.97572 0.98805 0.93132 1.21734 0.96339 1.01719 0.99400 1.21983 0.99812 0.98595 0.99637 1.61959 1.47890 1.02162 1.13534 1.22416 0.99916 1.01135 0.88754 1.22099 0.94779 0.88740 1.00665 1.21334 0.97853 0.93338 0.99705 1.18955 0.94850 0.92470 0.94750 1.21683 0.98234 0.93444 1.44566 0.92403 1.25974 0.96946 1.01419 0.95482 1.70095 1.18021 1.19372 1.49900 0.85462 0.78736 0.78260 0.78692 1.19721 1.20675 1.18805 0.89718 0.92220 0.90541 0.84406 0.84318 0.85131 0.86220 0.91931 0.92336 0.93156 0.93154 0.92175 0.92016 0.91834 0.90518 0.91839 0.96211 0.90803 0.96092 0.93522 0.93045 0.99008 0.99354 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.43 71.23 0.60 -1.36 16 2 C -0.09 -1.72 4.79 -19.87 -0.10 -1.82 16 3 C -0.13 -2.21 9.69 22.27 0.22 -2.00 16 4 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 5 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 6 C -0.10 -2.30 5.74 22.27 0.13 -2.18 16 7 C -0.08 -1.73 2.88 -19.87 -0.06 -1.79 16 8 C 0.13 3.19 1.32 44.17 0.06 3.25 16 9 H 0.05 1.22 5.85 -2.39 -0.01 1.20 16 10 C -0.09 -2.16 2.38 -10.79 -0.03 -2.18 16 11 C -0.13 -3.41 8.25 71.98 0.59 -2.82 16 12 C -0.14 -2.77 7.43 71.98 0.53 -2.24 16 13 N -0.53 -15.73 2.98 -901.45 -2.68 -18.42 16 14 C 0.03 0.73 8.93 127.69 1.14 1.87 16 15 C 0.06 2.30 4.82 86.30 0.42 2.72 16 16 C -0.08 -3.61 5.20 30.59 0.16 -3.45 16 17 C 0.03 1.48 4.97 29.85 0.15 1.63 16 18 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 21 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 22 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 26 H 0.08 1.20 5.80 -2.38 -0.01 1.19 16 27 H 0.06 1.07 6.01 -2.38 -0.01 1.05 16 28 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 29 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.12 3.08 7.24 -2.91 -0.02 3.06 16 33 H 0.06 1.72 6.10 -2.39 -0.01 1.70 16 34 H 0.06 1.42 5.99 -2.39 -0.01 1.40 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.48 7.59 -2.39 -0.02 1.46 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.18 5.85 -2.39 -0.01 1.17 16 39 H 0.06 1.11 6.81 -2.38 -0.02 1.09 16 40 H 0.08 1.98 5.95 -2.39 -0.01 1.96 16 41 H 0.06 1.90 6.55 -2.39 -0.02 1.88 16 42 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 2.64 5.58 -2.39 -0.01 2.62 16 44 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 45 H 0.05 1.97 6.68 -2.39 -0.02 1.96 16 46 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 49 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -64.37 363.82 5.49 -58.87 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.90 Total: 15.60 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 4.96 Total: -45.70 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.40 Total: -75.85 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.37 5.49 -58.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112357556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.308 kcal (2) G-P(sol) polarization free energy of solvation -64.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds