Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38258 * 120.00192 * 2 1 4 4 C 1.38215 * 120.00036 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00271 * 179.72650 * 2 1 3 8 8 C 1.50700 * 119.99622 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47633 * 339.28789 * 8 7 2 10 10 C 1.53005 * 109.47104 * 99.28800 * 8 7 2 11 11 C 1.52998 * 109.46888 * 292.14219 * 10 8 7 12 12 C 1.53005 * 109.47145 * 172.20120 * 11 10 8 13 13 C 1.52998 * 109.47427 * 292.20073 * 11 10 8 14 14 N 1.46897 * 109.47412 * 219.28832 * 8 7 2 15 15 C 1.46894 * 111.00308 * 151.78745 * 14 8 7 16 16 C 1.52996 * 109.47438 * 185.07643 * 15 14 8 17 17 C 1.52996 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47300 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00408 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47184 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47203 * 120.00081 * 22 20 18 25 25 H 1.48501 * 109.47066 * 240.00051 * 22 20 18 26 26 H 1.08995 * 109.47444 * 92.04223 * 1 2 3 27 27 H 1.09007 * 109.47208 * 332.04180 * 1 2 3 28 28 H 1.09004 * 109.47567 * 212.04730 * 1 2 3 29 29 H 1.07998 * 119.99921 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.99952 * 180.02562 * 4 3 2 31 31 H 1.07998 * 120.00433 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.00090 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.46799 * 52.14038 * 10 8 7 34 34 H 1.08997 * 109.47096 * 172.14496 * 10 8 7 35 35 H 1.08999 * 109.47717 * 52.20153 * 11 10 8 36 36 H 1.08999 * 109.46786 * 59.99463 * 12 11 10 37 37 H 1.08998 * 109.47340 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47170 * 300.00207 * 12 11 10 39 39 H 1.09002 * 109.47069 * 62.80856 * 13 11 10 40 40 H 1.08998 * 109.47652 * 182.81334 * 13 11 10 41 41 H 1.09009 * 109.46881 * 302.81017 * 13 11 10 42 42 H 1.00902 * 110.99926 * 275.74654 * 14 8 7 43 43 H 1.08994 * 109.47217 * 305.07819 * 15 14 8 44 44 H 1.09005 * 109.47099 * 65.07550 * 15 14 8 45 45 H 1.09003 * 109.47303 * 300.00173 * 16 15 14 46 46 H 1.09005 * 109.47051 * 59.99878 * 16 15 14 47 47 H 1.08994 * 109.47254 * 300.00281 * 17 16 15 48 48 H 1.09007 * 109.46929 * 60.00474 * 17 16 15 49 49 H 0.97002 * 119.99573 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0125 9 1 0.4305 -2.3343 0.3755 10 6 1.3906 -3.0672 -1.4083 11 6 0.5122 -2.1690 -2.2814 12 6 0.6129 -2.6196 -3.7401 13 6 -0.9418 -2.2696 -1.8159 14 7 2.1283 -3.4577 0.8940 15 6 1.1782 -4.4245 1.4602 16 6 1.9017 -5.3208 2.4671 17 6 0.9121 -6.3273 3.0573 18 6 1.6250 -7.2106 4.0487 19 1 2.6784 -7.0681 4.2391 20 6 0.9322 -8.2008 4.7126 21 7 -0.3505 -8.3747 4.4803 22 14 1.8156 -9.2951 5.9419 23 1 3.2442 -8.8973 6.0216 24 1 1.1858 -9.1471 7.2785 25 1 1.7192 -10.7106 5.5033 26 1 -0.3634 -0.0366 -1.0269 27 1 -0.3634 0.9078 0.4818 28 1 -0.3634 -0.8711 0.5453 29 1 1.6582 2.1326 0.0004 30 1 4.1204 2.1325 0.0010 31 1 5.3517 -0.0001 0.0014 32 1 4.1205 -2.1323 0.0010 33 1 2.3979 -3.1042 -1.8230 34 1 0.9706 -4.0728 -1.3836 35 1 0.8503 -1.1363 -2.1960 36 1 0.2748 -3.6523 -3.8255 37 1 -0.0125 -1.9794 -4.3622 38 1 1.6487 -2.5480 -4.0718 39 1 -1.0221 -1.9016 -0.7930 40 1 -1.5749 -1.6688 -2.4689 41 1 -1.2644 -3.3101 -1.8541 42 1 2.8758 -3.9284 0.4064 43 1 0.3723 -3.8901 1.9630 44 1 0.7637 -5.0378 0.6601 45 1 2.7077 -5.8553 1.9643 46 1 2.3163 -4.7075 3.2673 47 1 0.1064 -5.7926 3.5602 48 1 0.4972 -6.9408 2.2574 49 1 -0.8378 -9.0715 4.9472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118985948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -11.059466 kcal Electronic energy + Delta-G solvation = -23283.772655 eV Core-core repulsion = 20209.114788 eV Total energy + Delta-G solvation = -3074.657867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12361 -37.41703 -35.54642 -33.58984 -32.84107 -31.93639 -30.22821 -28.25579 -27.65435 -26.39880 -25.82016 -23.79152 -22.58181 -21.35581 -20.79578 -20.09352 -19.60064 -16.72603 -16.20702 -15.84250 -15.74314 -15.01405 -14.86486 -14.48099 -14.24379 -14.02082 -13.85202 -13.50359 -13.42750 -13.08803 -12.73571 -12.43943 -12.31593 -12.28825 -12.21027 -11.79830 -11.73636 -11.57830 -11.40390 -11.01478 -10.99345 -10.91144 -10.77209 -10.64626 -10.54479 -10.52531 -10.35916 -9.66464 -9.31869 -9.02698 -8.73122 -8.55708 -8.32122 -8.09413 -5.97272 -3.98959 1.38279 1.44373 3.33011 3.40336 3.45101 3.76977 4.34215 4.50264 4.65207 4.75198 4.83055 4.84347 4.88917 5.03607 5.08534 5.15982 5.30034 5.36456 5.38709 5.46288 5.51937 5.57362 5.58600 5.65046 5.70869 5.76012 5.78479 5.81600 5.84321 5.92588 5.98837 6.06122 6.10489 6.13681 6.22294 6.31612 6.36518 6.48681 6.55058 6.66729 6.75697 6.85361 7.04765 7.17700 7.38909 7.64024 7.72019 7.87058 8.03613 8.47233 9.08548 9.64948 11.14241 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003244 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.267147 B = 8629.769055 C = 9450.911305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.094 4.094 7 C -0.056 4.056 8 C 0.116 3.884 9 H 0.092 0.908 10 C -0.138 4.138 11 C -0.096 4.096 12 C -0.146 4.146 13 C -0.160 4.160 14 N -0.683 5.683 15 C 0.061 3.939 16 C -0.105 4.105 17 C 0.022 3.978 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.337 0.663 43 H 0.065 0.935 44 H 0.025 0.975 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.013 0.987 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 18.670 -15.553 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.057 4.057 8 C 0.006 3.994 9 H 0.109 0.891 10 C -0.177 4.177 11 C -0.115 4.115 12 C -0.204 4.204 13 C -0.217 4.217 14 N -0.312 5.312 15 C -0.067 4.067 16 C -0.143 4.143 17 C -0.016 4.016 18 C -0.555 4.555 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.155 0.845 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.801 18.956 -14.930 24.292 hybrid contribution 0.305 -1.234 -0.036 1.272 sum 3.106 17.722 -14.966 23.403 Atomic orbital electron populations 1.21187 0.91755 1.02737 1.02476 1.19690 0.95780 0.92604 1.00288 1.20931 0.94242 0.97163 1.01837 1.21041 0.94290 0.97842 1.01242 1.21100 0.99637 0.92641 1.01269 1.20914 0.93728 0.97902 0.98678 1.19656 0.93687 0.93796 0.98573 1.20691 0.97550 0.90025 0.91084 0.89058 1.22362 1.00286 0.99485 0.95535 1.21128 0.95562 1.00153 0.94636 1.21839 1.01378 1.01248 0.95925 1.22147 0.95712 1.02057 1.01790 1.60640 1.13107 1.20178 1.37247 1.22150 0.94761 0.92823 0.97013 1.21602 0.99100 0.96794 0.96852 1.19069 0.94091 0.92948 0.95474 1.21302 0.95838 1.15509 1.22879 0.92634 1.25033 0.94869 0.97548 0.97128 1.69981 1.07707 1.33141 1.42814 0.86547 0.79932 0.80414 0.81186 1.19719 1.21030 1.21071 0.90586 0.91884 0.90863 0.86538 0.86625 0.86509 0.86121 0.91758 0.91434 0.90661 0.92770 0.92928 0.92944 0.91640 0.92865 0.92644 0.84530 0.91633 0.95690 0.93691 0.92601 0.96634 0.96851 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 7.67 36.00 0.28 -0.91 16 2 C -0.08 -0.93 5.03 -104.63 -0.53 -1.46 16 3 C -0.12 -1.30 9.69 -39.58 -0.38 -1.68 16 4 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 5 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 6 C -0.09 -1.13 9.31 -39.58 -0.37 -1.50 16 7 C -0.06 -0.69 4.35 -104.62 -0.46 -1.14 16 8 C 0.12 1.43 1.94 -68.86 -0.13 1.30 16 9 H 0.09 1.17 3.89 -51.93 -0.20 0.97 16 10 C -0.14 -1.50 4.08 -26.73 -0.11 -1.61 16 11 C -0.10 -0.91 2.36 -90.62 -0.21 -1.13 16 12 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 13 C -0.16 -1.48 7.71 37.16 0.29 -1.20 16 14 N -0.68 -9.90 5.61 -107.96 -0.61 -10.51 16 15 C 0.06 1.05 5.52 -3.83 -0.02 1.03 16 16 C -0.11 -2.21 5.46 -26.74 -0.15 -2.36 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.08 0.64 5.56 -51.93 -0.29 0.35 16 27 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 28 H 0.07 0.74 4.99 -51.93 -0.26 0.48 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.39 7.34 -52.49 -0.39 1.00 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.80 7.62 -51.93 -0.40 0.40 16 35 H 0.08 0.75 5.38 -51.93 -0.28 0.47 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.61 4.01 -51.93 -0.21 0.40 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 42 H 0.34 4.56 7.99 -39.29 -0.31 4.24 16 43 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 44 H 0.02 0.42 7.66 -51.93 -0.40 0.03 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -30.57 373.75 -10.65 -41.22 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.60 Total: 1.63 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -2.80 Total: -28.37 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.13 Total: -37.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.57 -10.65 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118985948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.160 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds