Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38258 * 120.00192 * 2 1 4 4 C 1.38215 * 120.00036 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00271 * 179.72650 * 2 1 3 8 8 C 1.50700 * 119.99622 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47633 * 339.28789 * 8 7 2 10 10 C 1.53005 * 109.47104 * 99.28800 * 8 7 2 11 11 C 1.52998 * 109.46888 * 292.14219 * 10 8 7 12 12 C 1.53005 * 109.47145 * 172.20120 * 11 10 8 13 13 C 1.52998 * 109.47427 * 292.20073 * 11 10 8 14 14 N 1.46897 * 109.47412 * 219.28832 * 8 7 2 15 15 C 1.46894 * 111.00308 * 151.78745 * 14 8 7 16 16 C 1.52996 * 109.47438 * 185.07643 * 15 14 8 17 17 C 1.52996 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47300 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00408 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47184 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47203 * 120.00081 * 22 20 18 25 25 H 1.48501 * 109.47066 * 240.00051 * 22 20 18 26 26 H 1.08995 * 109.47444 * 92.04223 * 1 2 3 27 27 H 1.09007 * 109.47208 * 332.04180 * 1 2 3 28 28 H 1.09004 * 109.47567 * 212.04730 * 1 2 3 29 29 H 1.07998 * 119.99921 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.99952 * 180.02562 * 4 3 2 31 31 H 1.07998 * 120.00433 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.00090 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.46799 * 52.14038 * 10 8 7 34 34 H 1.08997 * 109.47096 * 172.14496 * 10 8 7 35 35 H 1.08999 * 109.47717 * 52.20153 * 11 10 8 36 36 H 1.08999 * 109.46786 * 59.99463 * 12 11 10 37 37 H 1.08998 * 109.47340 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47170 * 300.00207 * 12 11 10 39 39 H 1.09002 * 109.47069 * 62.80856 * 13 11 10 40 40 H 1.08998 * 109.47652 * 182.81334 * 13 11 10 41 41 H 1.09009 * 109.46881 * 302.81017 * 13 11 10 42 42 H 1.00902 * 110.99926 * 275.74654 * 14 8 7 43 43 H 1.08994 * 109.47217 * 305.07819 * 15 14 8 44 44 H 1.09005 * 109.47099 * 65.07550 * 15 14 8 45 45 H 1.09003 * 109.47303 * 300.00173 * 16 15 14 46 46 H 1.09005 * 109.47051 * 59.99878 * 16 15 14 47 47 H 1.08994 * 109.47254 * 300.00281 * 17 16 15 48 48 H 1.09007 * 109.46929 * 60.00474 * 17 16 15 49 49 H 0.97002 * 119.99573 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0125 9 1 0.4305 -2.3343 0.3755 10 6 1.3906 -3.0672 -1.4083 11 6 0.5122 -2.1690 -2.2814 12 6 0.6129 -2.6196 -3.7401 13 6 -0.9418 -2.2696 -1.8159 14 7 2.1283 -3.4577 0.8940 15 6 1.1782 -4.4245 1.4602 16 6 1.9017 -5.3208 2.4671 17 6 0.9121 -6.3273 3.0573 18 6 1.6250 -7.2106 4.0487 19 1 2.6784 -7.0681 4.2391 20 6 0.9322 -8.2008 4.7126 21 7 -0.3505 -8.3747 4.4803 22 14 1.8156 -9.2951 5.9419 23 1 3.2442 -8.8973 6.0216 24 1 1.1858 -9.1471 7.2785 25 1 1.7192 -10.7106 5.5033 26 1 -0.3634 -0.0366 -1.0269 27 1 -0.3634 0.9078 0.4818 28 1 -0.3634 -0.8711 0.5453 29 1 1.6582 2.1326 0.0004 30 1 4.1204 2.1325 0.0010 31 1 5.3517 -0.0001 0.0014 32 1 4.1205 -2.1323 0.0010 33 1 2.3979 -3.1042 -1.8230 34 1 0.9706 -4.0728 -1.3836 35 1 0.8503 -1.1363 -2.1960 36 1 0.2748 -3.6523 -3.8255 37 1 -0.0125 -1.9794 -4.3622 38 1 1.6487 -2.5480 -4.0718 39 1 -1.0221 -1.9016 -0.7930 40 1 -1.5749 -1.6688 -2.4689 41 1 -1.2644 -3.3101 -1.8541 42 1 2.8758 -3.9284 0.4064 43 1 0.3723 -3.8901 1.9630 44 1 0.7637 -5.0378 0.6601 45 1 2.7077 -5.8553 1.9643 46 1 2.3163 -4.7075 3.2673 47 1 0.1064 -5.7926 3.5602 48 1 0.4972 -6.9408 2.2574 49 1 -0.8378 -9.0715 4.9472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118985948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -26.088013 kcal Electronic energy + Delta-G solvation = -23284.424342 eV Core-core repulsion = 20209.114788 eV Total energy + Delta-G solvation = -3075.309554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99988 -38.37812 -36.81713 -35.35334 -33.71365 -33.46792 -31.54167 -29.38617 -28.41575 -27.53532 -27.16299 -24.91540 -24.10669 -22.34812 -22.05661 -21.37074 -20.52483 -18.51491 -17.51406 -16.79085 -16.76065 -16.47147 -16.13596 -15.76617 -15.21433 -15.20377 -14.87707 -14.52078 -14.33634 -14.27558 -13.95540 -13.67295 -13.49420 -13.41149 -13.15089 -13.03221 -12.95271 -12.78124 -12.53773 -12.48365 -12.37623 -12.26879 -11.86403 -11.77834 -11.66445 -11.50946 -11.46402 -11.41899 -11.29540 -11.03433 -10.55981 -9.57865 -9.45070 -9.23172 -8.20489 -6.31289 0.55110 0.60710 1.39536 1.39992 1.53632 2.40802 2.91403 3.12595 3.24928 3.77801 3.86917 4.03980 4.06756 4.09305 4.19560 4.22587 4.29070 4.34253 4.40776 4.53144 4.55336 4.71075 4.73644 4.77114 4.77433 4.85229 4.88311 4.91798 4.97296 5.01372 5.02354 5.05514 5.10911 5.14769 5.24552 5.27500 5.31124 5.35164 5.45013 5.51920 5.54954 5.66701 5.72375 5.75631 5.83403 5.86092 6.12785 6.24356 6.28746 6.48301 6.85656 7.37882 8.91625 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003244 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.267147 B = 8629.769055 C = 9450.911305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.129 4.129 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.072 4.072 8 C 0.121 3.879 9 H 0.086 0.914 10 C -0.131 4.131 11 C -0.090 4.090 12 C -0.145 4.145 13 C -0.160 4.160 14 N -0.684 5.684 15 C 0.077 3.923 16 C -0.090 4.090 17 C 0.026 3.974 18 C -0.542 4.542 19 H 0.058 0.942 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.277 1.277 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.343 0.657 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.050 0.950 46 H 0.049 0.951 47 H -0.010 1.010 48 H -0.008 1.008 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 19.864 -15.935 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.129 4.129 7 C -0.073 4.073 8 C 0.012 3.988 9 H 0.104 0.896 10 C -0.170 4.170 11 C -0.109 4.109 12 C -0.202 4.202 13 C -0.217 4.217 14 N -0.314 5.314 15 C -0.052 4.052 16 C -0.128 4.128 17 C -0.012 4.012 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.202 1.202 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.161 0.839 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.009 0.991 48 H 0.010 0.990 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.755 20.165 -15.327 25.605 hybrid contribution 0.006 -1.547 0.064 1.549 sum 3.762 18.618 -15.263 24.367 Atomic orbital electron populations 1.21196 0.90770 1.02852 1.03146 1.19924 0.96680 0.92608 1.00106 1.21244 0.94627 0.97706 1.01190 1.21378 0.94501 0.98599 1.00177 1.21355 1.00636 0.92517 1.00994 1.21037 0.93866 0.98481 0.99502 1.19667 0.93910 0.93811 0.99906 1.20660 0.97093 0.89779 0.91274 0.89618 1.22282 1.00675 0.99047 0.95039 1.21074 0.95301 0.99699 0.94841 1.21825 1.01741 1.01243 0.95427 1.22149 0.95783 1.01721 1.02038 1.60543 1.12798 1.19551 1.38512 1.21812 0.94543 0.92727 0.96159 1.21349 0.98048 0.96059 0.97390 1.18966 0.94369 0.93399 0.94437 1.21724 0.96225 1.16339 1.23724 0.92373 1.25990 0.95658 0.99097 0.99163 1.70105 1.09336 1.33954 1.43979 0.85392 0.78977 0.78273 0.78374 1.18673 1.20318 1.20225 0.89497 0.90664 0.91921 0.84471 0.84309 0.84915 0.86351 0.91580 0.92606 0.90631 0.93152 0.91801 0.92796 0.91871 0.91443 0.93591 0.83851 0.92331 0.95658 0.93157 0.93253 0.99117 0.99010 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 7.67 71.23 0.55 -1.62 16 2 C -0.09 -1.96 5.03 -19.87 -0.10 -2.06 16 3 C -0.13 -2.44 9.69 22.27 0.22 -2.23 16 4 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 5 C -0.14 -2.77 10.05 22.27 0.22 -2.55 16 6 C -0.11 -2.57 9.31 22.27 0.21 -2.36 16 7 C -0.07 -1.71 4.35 -19.86 -0.09 -1.80 16 8 C 0.12 2.97 1.94 44.17 0.09 3.06 16 9 H 0.09 2.20 3.89 -2.39 -0.01 2.20 16 10 C -0.13 -2.83 4.08 30.60 0.12 -2.70 16 11 C -0.09 -1.64 2.36 -10.79 -0.03 -1.66 16 12 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 13 C -0.16 -2.84 7.71 71.98 0.56 -2.28 16 14 N -0.68 -19.88 5.61 -495.46 -2.78 -22.66 16 15 C 0.08 2.69 5.52 86.30 0.48 3.16 16 16 C -0.09 -3.86 5.46 30.59 0.17 -3.69 16 17 C 0.03 1.40 4.97 29.85 0.15 1.55 16 18 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 21 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 22 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H 0.09 1.31 5.56 -2.39 -0.01 1.29 16 27 H 0.07 1.11 8.07 -2.38 -0.02 1.10 16 28 H 0.06 1.24 4.99 -2.39 -0.01 1.23 16 29 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.12 2.69 7.34 -2.92 -0.02 2.67 16 33 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.06 1.33 7.62 -2.39 -0.02 1.31 16 35 H 0.08 1.40 5.38 -2.39 -0.01 1.38 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.15 4.01 -2.39 -0.01 1.14 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.34 9.24 7.99 -89.69 -0.72 8.52 16 43 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 44 H 0.03 0.88 7.66 -2.38 -0.02 0.86 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 49 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -65.43 373.75 3.84 -61.59 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.19 Total: 21.49 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 4.12 Total: -50.14 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.50 Total: -80.04 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.43 3.84 -61.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118985948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.501 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds