Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99857 * 2 1 4 4 C 1.38209 * 119.99751 * 179.78862 * 3 2 1 5 5 C 1.38262 * 120.00185 * 0.44433 * 4 3 2 6 6 C 1.38214 * 119.99750 * 359.80890 * 5 4 3 7 7 C 1.38204 * 119.99978 * 180.27637 * 2 1 3 8 8 C 1.50700 * 120.00261 * 359.97438 * 7 2 1 9 9 H 1.09008 * 109.46616 * 40.00342 * 8 7 2 10 10 C 1.52999 * 109.47185 * 280.00464 * 8 7 2 11 11 C 1.53002 * 109.46956 * 174.60421 * 10 8 7 12 12 C 1.52997 * 109.47088 * 173.95914 * 11 10 8 13 13 C 1.53002 * 109.47327 * 293.95634 * 11 10 8 14 14 N 1.46895 * 109.47376 * 159.99995 * 8 7 2 15 15 C 1.46894 * 111.00410 * 228.42997 * 14 8 7 16 16 C 1.53001 * 109.47453 * 177.48457 * 15 14 8 17 17 C 1.52997 * 109.47436 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47566 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99314 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00498 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46777 * 60.00423 * 22 20 18 24 24 H 1.48500 * 109.47029 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47291 * 300.00809 * 22 20 18 26 26 H 1.08996 * 109.47211 * 269.72871 * 1 2 3 27 27 H 1.08991 * 109.47259 * 149.72696 * 1 2 3 28 28 H 1.09006 * 109.46810 * 29.72759 * 1 2 3 29 29 H 1.07995 * 120.00099 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.00332 * 180.26820 * 4 3 2 31 31 H 1.07992 * 120.00219 * 179.83683 * 5 4 3 32 32 H 1.08003 * 120.00376 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47425 * 294.60348 * 10 8 7 34 34 H 1.09007 * 109.47178 * 54.60643 * 10 8 7 35 35 H 1.08993 * 109.47432 * 53.95612 * 11 10 8 36 36 H 1.08998 * 109.47676 * 59.99699 * 12 11 10 37 37 H 1.08996 * 109.47693 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47347 * 300.00238 * 12 11 10 39 39 H 1.08999 * 109.47094 * 59.99679 * 13 11 10 40 40 H 1.08995 * 109.47259 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47081 * 299.99986 * 13 11 10 42 42 H 1.00906 * 110.99460 * 104.47582 * 14 8 7 43 43 H 1.09007 * 109.47253 * 297.48445 * 15 14 8 44 44 H 1.08995 * 109.47241 * 57.48129 * 15 14 8 45 45 H 1.09007 * 109.46881 * 300.00215 * 16 15 14 46 46 H 1.08995 * 109.47165 * 59.99625 * 16 15 14 47 47 H 1.09001 * 109.46823 * 300.00091 * 17 16 15 48 48 H 1.09003 * 109.47217 * 59.99326 * 17 16 15 49 49 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0044 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 -0.0057 7 6 2.1980 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0115 9 1 0.5809 -2.4200 -0.6715 10 6 0.9731 -2.8249 1.4078 11 6 0.0952 -4.0777 1.3808 12 6 -0.2524 -4.4878 2.8132 13 6 -1.1921 -3.7819 0.6085 14 7 2.3266 -3.5746 -0.4904 15 6 1.6628 -4.3801 -1.5240 16 6 2.6319 -5.4448 -2.0416 17 6 1.9407 -6.2834 -3.1186 18 6 2.8954 -7.3317 -3.6289 19 1 3.8952 -7.3939 -3.2250 20 6 2.4924 -8.2121 -4.6104 21 7 1.2749 -8.1366 -5.1018 22 14 3.6761 -9.5111 -5.2434 23 1 4.0919 -10.3907 -4.1214 24 1 3.0051 -10.3250 -6.2886 25 1 4.8726 -8.8500 -5.8236 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8874 -0.5180 28 1 -0.3633 0.8925 -0.5096 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0088 31 1 5.3517 0.0000 0.0003 32 1 4.1206 -2.1323 -0.0091 33 1 1.8383 -3.0013 2.0468 34 1 0.3973 -1.9861 1.7991 35 1 0.6342 -4.8887 0.8914 36 1 -0.7916 -3.6767 3.3028 37 1 -0.8775 -5.3805 2.7942 38 1 0.6646 -4.6985 3.3636 39 1 -0.9445 -3.4897 -0.4120 40 1 -1.8177 -4.6742 0.5897 41 1 -1.7313 -2.9708 1.0980 42 1 2.6393 -4.1540 0.2742 43 1 0.7841 -4.8647 -1.0983 44 1 1.3583 -3.7346 -2.3478 45 1 3.5106 -4.9602 -2.4673 46 1 2.9364 -6.0903 -1.2178 47 1 1.0618 -6.7680 -2.6933 48 1 1.6365 -5.6376 -3.9424 49 1 0.9914 -8.7557 -5.7927 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118986054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -14.297985 kcal Electronic energy + Delta-G solvation = -23325.052461 eV Core-core repulsion = 20250.254160 eV Total energy + Delta-G solvation = -3074.798300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92922 -37.73622 -35.08219 -33.59311 -32.87648 -31.89738 -30.15893 -28.21266 -27.32162 -26.82522 -25.70086 -23.79041 -22.53270 -21.33331 -20.53537 -20.26670 -19.46733 -16.56372 -16.28228 -15.91556 -15.71481 -14.98811 -14.51820 -14.45888 -14.34934 -13.88605 -13.68269 -13.63238 -13.33659 -13.02461 -12.64059 -12.48908 -12.30749 -12.21671 -12.12410 -11.94896 -11.70074 -11.63092 -11.37973 -11.14787 -10.93096 -10.83190 -10.76029 -10.67010 -10.58062 -10.53545 -10.28439 -9.66327 -9.30566 -9.03926 -8.65463 -8.47493 -8.31327 -8.10190 -5.96753 -3.98704 1.42910 1.52472 3.35550 3.39595 3.42436 3.83900 4.34766 4.50374 4.62954 4.81291 4.83905 4.88644 4.94612 5.12865 5.17668 5.22041 5.36380 5.37245 5.39060 5.49026 5.53166 5.59002 5.63520 5.70091 5.73273 5.78195 5.80022 5.87591 5.89578 5.93955 6.01104 6.10425 6.13911 6.20964 6.27958 6.29742 6.39974 6.55599 6.64577 6.70632 6.76436 6.90104 7.12685 7.17766 7.41674 7.66782 7.71745 7.87353 8.03832 8.47297 9.08316 9.65100 11.14652 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003566 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.616652 B = 7850.591256 C = 8942.290649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.067 4.067 8 C 0.120 3.880 9 H 0.083 0.917 10 C -0.128 4.128 11 C -0.103 4.103 12 C -0.145 4.145 13 C -0.150 4.150 14 N -0.683 5.683 15 C 0.059 3.941 16 C -0.106 4.106 17 C 0.023 3.977 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.339 0.661 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.013 0.987 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 16.765 15.436 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.103 4.103 7 C -0.068 4.068 8 C 0.010 3.990 9 H 0.101 0.899 10 C -0.167 4.167 11 C -0.122 4.122 12 C -0.202 4.202 13 C -0.207 4.207 14 N -0.314 5.314 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.015 4.015 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.024 17.069 14.842 22.709 hybrid contribution 0.034 -1.183 0.032 1.184 sum -1.989 15.885 14.873 21.852 Atomic orbital electron populations 1.20852 0.91740 1.02742 1.01986 1.19706 0.95727 0.92754 1.00709 1.20894 0.94247 0.97076 1.02305 1.21053 0.94283 0.97874 1.01224 1.21175 0.99699 0.92743 1.01479 1.21113 0.93834 0.98225 0.97080 1.19800 0.94049 0.93604 0.99370 1.20524 0.93802 0.89533 0.95120 0.89878 1.22209 0.99681 0.97927 0.96879 1.21205 0.96652 0.97868 0.96457 1.21809 1.01313 1.01076 0.95989 1.21912 0.97017 1.01510 1.00267 1.60532 1.40030 1.15037 1.15771 1.22245 0.96198 0.95030 0.93475 1.21608 0.98116 0.95423 0.99269 1.19049 0.95637 0.94014 0.92763 1.21222 0.99034 1.15006 1.20431 0.92768 1.25019 0.95161 0.97696 0.96590 1.69955 1.17416 1.37819 1.28445 0.86670 0.81179 0.81679 0.78545 1.20281 1.21329 1.20233 0.91417 0.91288 0.91880 0.86673 0.86733 0.86544 0.84852 0.91514 0.91359 0.90688 0.92951 0.92648 0.92800 0.92350 0.92556 0.92887 0.84289 0.95237 0.91738 0.92652 0.93730 0.96867 0.96680 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.93 36.01 0.32 -0.78 16 2 C -0.09 -1.03 5.87 -104.62 -0.61 -1.64 16 3 C -0.13 -1.39 9.70 -39.58 -0.38 -1.77 16 4 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 5 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 6 C -0.08 -1.09 9.33 -39.58 -0.37 -1.46 16 7 C -0.07 -0.85 5.09 -104.62 -0.53 -1.38 16 8 C 0.12 1.46 1.74 -68.87 -0.12 1.34 16 9 H 0.08 1.07 4.04 -51.92 -0.21 0.86 16 10 C -0.13 -1.33 3.87 -26.73 -0.10 -1.44 16 11 C -0.10 -1.09 2.48 -90.62 -0.22 -1.32 16 12 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 13 C -0.15 -1.58 8.74 37.16 0.32 -1.26 16 14 N -0.68 -9.56 4.66 -107.96 -0.50 -10.07 16 15 C 0.06 0.99 5.06 -3.83 -0.02 0.97 16 16 C -0.11 -2.19 5.44 -26.73 -0.15 -2.34 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 27 H 0.07 0.67 6.12 -51.93 -0.32 0.36 16 28 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.75 7.14 -52.48 -0.37 1.37 16 33 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 34 H 0.07 0.67 7.09 -51.93 -0.37 0.30 16 35 H 0.07 0.93 5.92 -51.93 -0.31 0.62 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.67 6.19 -51.93 -0.32 0.35 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.34 4.46 7.69 -39.29 -0.30 4.16 16 43 H 0.03 0.49 6.08 -51.93 -0.32 0.18 16 44 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 45 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -30.20 379.65 -10.73 -40.93 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.79 Total: 2.03 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -2.87 Total: -29.01 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.23 Total: -36.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.20 -10.73 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118986054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.631 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds