Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99857 * 2 1 4 4 C 1.38209 * 119.99751 * 179.78862 * 3 2 1 5 5 C 1.38262 * 120.00185 * 0.44433 * 4 3 2 6 6 C 1.38214 * 119.99750 * 359.80890 * 5 4 3 7 7 C 1.38204 * 119.99978 * 180.27637 * 2 1 3 8 8 C 1.50700 * 120.00261 * 359.97438 * 7 2 1 9 9 H 1.09008 * 109.46616 * 40.00342 * 8 7 2 10 10 C 1.52999 * 109.47185 * 280.00464 * 8 7 2 11 11 C 1.53002 * 109.46956 * 174.60421 * 10 8 7 12 12 C 1.52997 * 109.47088 * 173.95914 * 11 10 8 13 13 C 1.53002 * 109.47327 * 293.95634 * 11 10 8 14 14 N 1.46895 * 109.47376 * 159.99995 * 8 7 2 15 15 C 1.46894 * 111.00410 * 228.42997 * 14 8 7 16 16 C 1.53001 * 109.47453 * 177.48457 * 15 14 8 17 17 C 1.52997 * 109.47436 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47566 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99314 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00498 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46777 * 60.00423 * 22 20 18 24 24 H 1.48500 * 109.47029 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47291 * 300.00809 * 22 20 18 26 26 H 1.08996 * 109.47211 * 269.72871 * 1 2 3 27 27 H 1.08991 * 109.47259 * 149.72696 * 1 2 3 28 28 H 1.09006 * 109.46810 * 29.72759 * 1 2 3 29 29 H 1.07995 * 120.00099 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.00332 * 180.26820 * 4 3 2 31 31 H 1.07992 * 120.00219 * 179.83683 * 5 4 3 32 32 H 1.08003 * 120.00376 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47425 * 294.60348 * 10 8 7 34 34 H 1.09007 * 109.47178 * 54.60643 * 10 8 7 35 35 H 1.08993 * 109.47432 * 53.95612 * 11 10 8 36 36 H 1.08998 * 109.47676 * 59.99699 * 12 11 10 37 37 H 1.08996 * 109.47693 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47347 * 300.00238 * 12 11 10 39 39 H 1.08999 * 109.47094 * 59.99679 * 13 11 10 40 40 H 1.08995 * 109.47259 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47081 * 299.99986 * 13 11 10 42 42 H 1.00906 * 110.99460 * 104.47582 * 14 8 7 43 43 H 1.09007 * 109.47253 * 297.48445 * 15 14 8 44 44 H 1.08995 * 109.47241 * 57.48129 * 15 14 8 45 45 H 1.09007 * 109.46881 * 300.00215 * 16 15 14 46 46 H 1.08995 * 109.47165 * 59.99625 * 16 15 14 47 47 H 1.09001 * 109.46823 * 300.00091 * 17 16 15 48 48 H 1.09003 * 109.47217 * 59.99326 * 17 16 15 49 49 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0044 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 -0.0057 7 6 2.1980 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0115 9 1 0.5809 -2.4200 -0.6715 10 6 0.9731 -2.8249 1.4078 11 6 0.0952 -4.0777 1.3808 12 6 -0.2524 -4.4878 2.8132 13 6 -1.1921 -3.7819 0.6085 14 7 2.3266 -3.5746 -0.4904 15 6 1.6628 -4.3801 -1.5240 16 6 2.6319 -5.4448 -2.0416 17 6 1.9407 -6.2834 -3.1186 18 6 2.8954 -7.3317 -3.6289 19 1 3.8952 -7.3939 -3.2250 20 6 2.4924 -8.2121 -4.6104 21 7 1.2749 -8.1366 -5.1018 22 14 3.6761 -9.5111 -5.2434 23 1 4.0919 -10.3907 -4.1214 24 1 3.0051 -10.3250 -6.2886 25 1 4.8726 -8.8500 -5.8236 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8874 -0.5180 28 1 -0.3633 0.8925 -0.5096 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0088 31 1 5.3517 0.0000 0.0003 32 1 4.1206 -2.1323 -0.0091 33 1 1.8383 -3.0013 2.0468 34 1 0.3973 -1.9861 1.7991 35 1 0.6342 -4.8887 0.8914 36 1 -0.7916 -3.6767 3.3028 37 1 -0.8775 -5.3805 2.7942 38 1 0.6646 -4.6985 3.3636 39 1 -0.9445 -3.4897 -0.4120 40 1 -1.8177 -4.6742 0.5897 41 1 -1.7313 -2.9708 1.0980 42 1 2.6393 -4.1540 0.2742 43 1 0.7841 -4.8647 -1.0983 44 1 1.3583 -3.7346 -2.3478 45 1 3.5106 -4.9602 -2.4673 46 1 2.9364 -6.0903 -1.2178 47 1 1.0618 -6.7680 -2.6933 48 1 1.6365 -5.6376 -3.9424 49 1 0.9914 -8.7557 -5.7927 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118986054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = -28.449213 kcal Electronic energy + Delta-G solvation = -23325.666104 eV Core-core repulsion = 20250.254160 eV Total energy + Delta-G solvation = -3075.411944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84717 -38.71470 -36.50817 -35.16362 -33.97094 -33.30539 -31.51725 -29.36797 -28.12733 -27.62898 -27.42931 -24.80876 -24.17329 -22.32177 -22.02308 -21.25298 -20.53382 -18.49873 -17.35377 -17.11745 -16.77098 -16.46940 -15.85532 -15.65618 -15.29473 -14.99290 -14.97260 -14.56022 -14.27968 -14.20443 -13.88557 -13.68985 -13.52145 -13.25608 -13.23104 -13.00638 -12.97352 -12.74604 -12.67245 -12.48121 -12.45101 -12.29234 -11.99477 -11.78806 -11.62017 -11.58155 -11.51397 -11.38271 -11.30646 -11.00381 -10.54667 -9.54033 -9.37892 -9.25420 -8.19773 -6.30829 0.55566 0.63787 1.39505 1.42815 1.50694 2.41016 2.95570 3.13178 3.22227 3.73878 3.93854 3.97390 4.08447 4.13864 4.22728 4.25201 4.31716 4.34519 4.45654 4.53507 4.59371 4.70445 4.72597 4.78096 4.78625 4.82077 4.90108 4.92867 4.98791 4.99504 5.03250 5.06104 5.11741 5.14527 5.25667 5.27733 5.33198 5.38440 5.44560 5.46880 5.53372 5.69442 5.75123 5.77092 5.84341 5.86652 6.17643 6.26261 6.30738 6.53619 6.85823 7.38297 8.91920 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003566 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.616652 B = 7850.591256 C = 8942.290649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.084 4.084 8 C 0.126 3.874 9 H 0.076 0.924 10 C -0.117 4.117 11 C -0.102 4.102 12 C -0.141 4.141 13 C -0.149 4.149 14 N -0.682 5.682 15 C 0.077 3.923 16 C -0.091 4.091 17 C 0.027 3.973 18 C -0.544 4.544 19 H 0.058 0.942 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.268 1.268 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.345 0.655 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.050 0.950 47 H -0.009 1.009 48 H -0.012 1.012 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 17.753 16.584 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.122 4.122 7 C -0.085 4.085 8 C 0.016 3.984 9 H 0.094 0.906 10 C -0.156 4.156 11 C -0.120 4.120 12 C -0.199 4.199 13 C -0.206 4.206 14 N -0.313 5.313 15 C -0.052 4.052 16 C -0.129 4.129 17 C -0.010 4.010 18 C -0.582 4.582 19 H 0.077 0.923 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.788 3.212 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.193 1.193 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.164 0.836 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.010 0.990 48 H 0.006 0.994 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.507 18.069 16.010 24.188 hybrid contribution -0.140 -1.424 -0.326 1.468 sum -1.647 16.645 15.684 22.929 Atomic orbital electron populations 1.20880 0.90341 1.03012 1.02939 1.19984 0.96914 0.92599 1.00287 1.21230 0.94540 0.97765 1.01503 1.21381 0.94609 0.98502 1.00258 1.21401 1.00577 0.92727 1.01420 1.21166 0.94190 0.98485 0.98374 1.19886 0.94134 0.94042 1.00447 1.20493 0.93127 0.88774 0.95995 0.90596 1.22104 0.99742 0.98139 0.95587 1.21168 0.96421 0.97249 0.97195 1.21780 1.01626 1.01445 0.95019 1.21904 0.97122 1.01894 0.99698 1.60422 1.40289 1.14901 1.15654 1.21880 0.95274 0.94049 0.93991 1.21355 0.98023 0.95734 0.97781 1.18943 0.94974 0.93804 0.93308 1.21669 0.99645 1.15898 1.20970 0.92333 1.25977 0.96995 1.00096 0.96723 1.70090 1.19396 1.38888 1.28989 0.85516 0.78807 0.78659 0.78169 1.19072 1.20738 1.19279 0.90008 0.92009 0.90656 0.84450 0.84425 0.85237 0.85824 0.91359 0.90132 0.92805 0.91688 0.92841 0.92451 0.93704 0.93059 0.91143 0.83635 0.95076 0.92988 0.93294 0.93083 0.99021 0.99372 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.93 71.24 0.64 -1.32 16 2 C -0.10 -2.11 5.87 -19.87 -0.12 -2.23 16 3 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 4 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 5 C -0.14 -3.19 10.05 22.27 0.22 -2.97 16 6 C -0.10 -2.65 9.33 22.27 0.21 -2.44 16 7 C -0.08 -2.08 5.09 -19.87 -0.10 -2.18 16 8 C 0.13 3.02 1.74 44.17 0.08 3.10 16 9 H 0.08 1.96 4.04 -2.38 -0.01 1.95 16 10 C -0.12 -2.30 3.87 30.59 0.12 -2.18 16 11 C -0.10 -2.08 2.48 -10.79 -0.03 -2.11 16 12 C -0.14 -2.44 9.19 71.98 0.66 -1.78 16 13 C -0.15 -3.05 8.74 71.98 0.63 -2.43 16 14 N -0.68 -19.25 4.66 -495.46 -2.31 -21.56 16 15 C 0.08 2.68 5.06 86.30 0.44 3.11 16 16 C -0.09 -3.85 5.44 30.59 0.17 -3.68 16 17 C 0.03 1.48 4.97 29.85 0.15 1.63 16 18 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 21 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 22 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.08 1.15 7.77 -2.39 -0.02 1.13 16 27 H 0.06 1.14 6.12 -2.39 -0.01 1.12 16 28 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 29 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 31 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.12 3.28 7.14 -2.91 -0.02 3.26 16 33 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 34 H 0.08 1.41 7.09 -2.38 -0.02 1.40 16 35 H 0.05 1.33 5.92 -2.39 -0.01 1.32 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.04 1.03 6.19 -2.39 -0.01 1.02 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.34 9.07 7.69 -89.69 -0.69 8.38 16 43 H 0.03 1.07 6.08 -2.38 -0.01 1.06 16 44 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 45 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -65.28 379.65 4.41 -60.87 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.21 Total: 22.41 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 4.20 Total: -51.28 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.02 Total: -79.02 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.28 4.41 -60.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118986054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds