Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 H 1.08997 * 109.47166 * 54.16106 * 3 2 1 5 5 C 1.53004 * 109.47139 * 174.15781 * 3 2 1 6 6 C 1.50698 * 109.47073 * 185.81951 * 5 3 2 7 7 C 1.38238 * 119.99266 * 84.79545 * 6 5 3 8 8 C 1.38240 * 119.99473 * 180.02562 * 7 6 5 9 9 C 1.38236 * 120.00372 * 0.02562 * 8 7 6 10 10 C 1.38238 * 119.99440 * 0.24627 * 9 8 7 11 11 C 1.38226 * 120.00528 * 264.82263 * 6 5 3 12 12 N 1.46901 * 109.47024 * 294.15848 * 3 2 1 13 13 C 1.46898 * 111.00078 * 85.27431 * 12 3 2 14 14 C 1.53004 * 109.46771 * 76.69223 * 13 12 3 15 15 C 1.46902 * 110.99793 * 321.32200 * 12 3 2 16 16 C 1.53000 * 109.46972 * 196.12173 * 15 12 3 17 17 C 1.53002 * 109.47371 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47321 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00105 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47579 * 59.99788 * 22 20 18 24 24 H 1.48502 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47120 * 299.99833 * 22 20 18 26 26 H 1.09002 * 109.47053 * 310.99512 * 1 2 3 27 27 H 1.09001 * 109.47180 * 70.99377 * 1 2 3 28 28 H 1.09001 * 109.47203 * 190.99307 * 1 2 3 29 29 H 1.09007 * 109.47055 * 240.00010 * 2 1 3 30 30 H 1.09001 * 109.47387 * 120.00342 * 2 1 3 31 31 H 1.09004 * 109.46686 * 65.82518 * 5 3 2 32 32 H 1.08994 * 109.47260 * 305.82766 * 5 3 2 33 33 H 1.07996 * 120.00790 * 0.02562 * 7 6 5 34 34 H 1.08004 * 119.99625 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.00230 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.99710 * 179.72401 * 10 9 8 37 37 H 1.08004 * 119.99819 * 359.97438 * 11 6 5 38 38 H 1.08997 * 109.47202 * 196.69222 * 13 12 3 39 39 H 1.09002 * 109.47296 * 316.69655 * 13 12 3 40 40 H 1.08996 * 109.47233 * 304.76538 * 14 13 12 41 41 H 1.09003 * 109.46629 * 64.76524 * 14 13 12 42 42 H 1.09001 * 109.46923 * 184.76362 * 14 13 12 43 43 H 1.08995 * 109.47479 * 316.12030 * 15 12 3 44 44 H 1.09004 * 109.47207 * 76.12602 * 15 12 3 45 45 H 1.08998 * 109.47394 * 300.00334 * 16 15 12 46 46 H 1.09004 * 109.46805 * 60.00182 * 16 15 12 47 47 H 1.08998 * 109.46940 * 300.00375 * 17 16 15 48 48 H 1.08997 * 109.46803 * 60.00139 * 17 16 15 49 49 H 0.97005 * 119.99714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 0.8331 5 6 3.5630 1.4450 0.1468 6 6 4.0515 2.8633 0.2904 7 6 4.0593 3.4691 1.5330 8 6 4.5069 4.7704 1.6646 9 6 4.9462 5.4660 0.5537 10 6 4.9331 4.8620 -0.6896 11 6 4.4913 3.5587 -0.8203 12 7 1.6688 2.0931 -1.2637 13 6 0.3101 2.6467 -1.1916 14 6 0.3305 3.9445 -0.3815 15 6 1.7989 1.1625 -2.3929 16 6 1.8018 1.9498 -3.7048 17 6 1.9366 0.9806 -4.8810 18 6 1.9401 1.7562 -6.1731 19 1 1.8551 2.8327 -6.1571 20 6 2.0518 1.0914 -7.3758 21 7 2.1558 -0.2195 -7.3954 22 14 2.0568 2.0527 -8.9775 23 1 3.2010 2.9993 -8.9832 24 1 2.1863 1.1119 -10.1191 25 1 0.7863 2.8112 -9.1035 26 1 -0.3633 0.6742 0.7757 27 1 -0.3633 0.3347 -0.9716 28 1 -0.3634 -1.0088 0.1960 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0139 0.9931 -0.7367 32 1 3.8437 0.8727 1.0309 33 1 3.7157 2.9259 2.4008 34 1 4.5126 5.2438 2.6353 35 1 5.2955 6.4827 0.6566 36 1 5.2722 5.4069 -1.5583 37 1 4.4851 3.0854 -1.7911 38 1 -0.0523 2.8527 -2.1987 39 1 -0.3503 1.9269 -0.7079 40 1 0.7717 3.7551 0.5970 41 1 0.9230 4.6924 -0.9086 42 1 -0.6885 4.3106 -0.2560 43 1 2.7322 0.6072 -2.3005 44 1 0.9600 0.4666 -2.3887 45 1 0.8685 2.5053 -3.7973 46 1 2.6407 2.6458 -3.7090 47 1 2.8697 0.4249 -4.7887 48 1 1.0975 0.2851 -4.8766 49 1 2.2347 -0.6872 -8.2416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120418472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = 6.870570 kcal Electronic energy + Delta-G solvation = -23909.752320 eV Core-core repulsion = 20835.871957 eV Total energy + Delta-G solvation = -3073.880363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70853 -38.43399 -34.23164 -33.19509 -32.14134 -31.66593 -30.69106 -29.63814 -28.07945 -25.91593 -24.14518 -23.03372 -22.37405 -21.72452 -21.03783 -20.21131 -19.13231 -16.62947 -16.28819 -15.89461 -15.25630 -14.94652 -14.76640 -14.64654 -14.37613 -14.33231 -13.40537 -13.21860 -13.20129 -13.10068 -12.62941 -12.33878 -12.15451 -12.07219 -11.80007 -11.68025 -11.53658 -11.31584 -11.20752 -11.07236 -10.89170 -10.80935 -10.69004 -10.59274 -10.51511 -10.35221 -10.19960 -9.51170 -9.26287 -9.02269 -8.72835 -8.47530 -8.30364 -7.76739 -5.96141 -3.97793 1.54304 1.61115 3.35740 3.39839 3.42711 3.96652 4.17805 4.50056 4.75292 4.98625 5.05173 5.10433 5.14640 5.19686 5.27816 5.30979 5.39730 5.44713 5.52675 5.59296 5.67668 5.68233 5.71238 5.75944 5.84132 5.88036 5.94024 5.97595 6.02219 6.12921 6.19780 6.21555 6.24625 6.28482 6.31450 6.44919 6.48632 6.61476 6.71120 6.79594 6.88700 6.89703 7.20662 7.21164 7.53262 7.56252 7.73401 7.88983 8.04955 8.48860 9.09395 9.66008 11.15247 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.004242 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.281440 B = 6599.417079 C = 7640.129698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C 0.089 3.911 4 H 0.076 0.924 5 C -0.074 4.074 6 C -0.057 4.057 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.087 4.087 12 N -0.523 5.523 13 C 0.030 3.970 14 C -0.140 4.140 15 C 0.054 3.946 16 C -0.102 4.102 17 C 0.023 3.977 18 C -0.517 4.517 19 H 0.053 0.947 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 5.427 20.113 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.197 4.197 3 C -0.020 4.020 4 H 0.094 0.906 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.105 4.105 12 N -0.246 5.246 13 C -0.098 4.098 14 C -0.198 4.198 15 C -0.073 4.073 16 C -0.140 4.140 17 C -0.015 4.015 18 C -0.555 4.555 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.375 5.669 19.911 20.748 hybrid contribution -0.581 -0.162 -0.855 1.046 sum 0.793 5.507 19.056 19.852 Atomic orbital electron populations 1.22038 0.96019 1.01251 1.02085 1.22292 0.96287 0.98348 1.02813 1.21738 0.94319 0.92541 0.93362 0.90611 1.20676 0.95222 0.92997 1.02244 1.19678 0.97140 0.96010 0.92876 1.20942 1.01259 0.95292 0.96914 1.20989 1.00356 0.94912 0.98247 1.21039 1.01269 0.99580 0.93090 1.21161 1.00056 0.95476 0.97177 1.21097 0.96660 0.94172 0.98588 1.62215 1.24842 1.35304 1.02264 1.22473 0.89958 0.96172 1.01184 1.21718 1.00401 0.97812 0.99854 1.22339 1.00116 0.94010 0.90826 1.21631 1.00543 0.98918 0.92919 1.19057 0.96841 0.94184 0.91380 1.21218 1.49741 0.93330 0.91225 0.92826 1.25010 0.95450 0.94828 0.99137 1.69957 1.50639 1.06919 1.26150 0.86691 0.78594 0.79762 0.83144 1.20249 1.21346 1.20308 0.92883 0.91632 0.93023 0.90637 0.92027 0.90603 0.91275 0.86933 0.86917 0.86887 0.86487 0.85730 0.90580 0.93323 0.93266 0.92330 0.93296 0.91533 0.94928 0.93677 0.92876 0.96795 0.96999 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.14 37.16 0.30 -1.44 16 2 C -0.16 -1.80 4.88 -26.73 -0.13 -1.93 16 3 C 0.09 1.06 1.74 -67.71 -0.12 0.95 16 4 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 5 C -0.07 -0.86 4.91 -27.88 -0.14 -1.00 16 6 C -0.06 -0.71 4.90 -104.63 -0.51 -1.22 16 7 C -0.13 -1.43 9.72 -39.58 -0.38 -1.81 16 8 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 9 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 10 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 11 C -0.09 -1.19 9.57 -39.59 -0.38 -1.56 16 12 N -0.52 -7.33 3.87 -226.64 -0.88 -8.20 16 13 C 0.03 0.40 4.99 -3.82 -0.02 0.38 16 14 C -0.14 -1.72 10.07 37.16 0.37 -1.34 16 15 C 0.05 0.90 3.36 -3.82 -0.01 0.89 16 16 C -0.10 -2.10 5.22 -26.73 -0.14 -2.24 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 22 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H 0.05 0.54 7.62 -51.93 -0.40 0.15 16 27 H 0.06 0.82 4.87 -51.93 -0.25 0.57 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.97 5.99 -51.93 -0.31 0.66 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.97 6.92 -51.93 -0.36 0.61 16 32 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.11 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.08 1.16 6.25 -51.93 -0.32 0.83 16 39 H 0.05 0.61 4.03 -51.93 -0.21 0.40 16 40 H 0.05 0.59 6.77 -51.93 -0.35 0.23 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.12 6.27 -51.93 -0.33 0.79 16 44 H 0.03 0.55 5.80 -51.93 -0.30 0.25 16 45 H 0.04 0.94 6.55 -51.93 -0.34 0.59 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -29.72 374.17 -10.96 -40.68 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.54 Total: 0.43 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -2.90 Total: -29.02 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.14 Total: -34.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.72 -10.96 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120418472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds