Wall clock time and date at job start Tue Mar 31 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47312 * 2 1 4 4 H 1.08997 * 109.47166 * 54.16106 * 3 2 1 5 5 C 1.53004 * 109.47139 * 174.15781 * 3 2 1 6 6 C 1.50698 * 109.47073 * 185.81951 * 5 3 2 7 7 C 1.38238 * 119.99266 * 84.79545 * 6 5 3 8 8 C 1.38240 * 119.99473 * 180.02562 * 7 6 5 9 9 C 1.38236 * 120.00372 * 0.02562 * 8 7 6 10 10 C 1.38238 * 119.99440 * 0.24627 * 9 8 7 11 11 C 1.38226 * 120.00528 * 264.82263 * 6 5 3 12 12 N 1.46901 * 109.47024 * 294.15848 * 3 2 1 13 13 C 1.46898 * 111.00078 * 85.27431 * 12 3 2 14 14 C 1.53004 * 109.46771 * 76.69223 * 13 12 3 15 15 C 1.46902 * 110.99793 * 321.32200 * 12 3 2 16 16 C 1.53000 * 109.46972 * 196.12173 * 15 12 3 17 17 C 1.53002 * 109.47371 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47321 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00105 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47579 * 59.99788 * 22 20 18 24 24 H 1.48502 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47120 * 299.99833 * 22 20 18 26 26 H 1.09002 * 109.47053 * 310.99512 * 1 2 3 27 27 H 1.09001 * 109.47180 * 70.99377 * 1 2 3 28 28 H 1.09001 * 109.47203 * 190.99307 * 1 2 3 29 29 H 1.09007 * 109.47055 * 240.00010 * 2 1 3 30 30 H 1.09001 * 109.47387 * 120.00342 * 2 1 3 31 31 H 1.09004 * 109.46686 * 65.82518 * 5 3 2 32 32 H 1.08994 * 109.47260 * 305.82766 * 5 3 2 33 33 H 1.07996 * 120.00790 * 0.02562 * 7 6 5 34 34 H 1.08004 * 119.99625 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.00230 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.99710 * 179.72401 * 10 9 8 37 37 H 1.08004 * 119.99819 * 359.97438 * 11 6 5 38 38 H 1.08997 * 109.47202 * 196.69222 * 13 12 3 39 39 H 1.09002 * 109.47296 * 316.69655 * 13 12 3 40 40 H 1.08996 * 109.47233 * 304.76538 * 14 13 12 41 41 H 1.09003 * 109.46629 * 64.76524 * 14 13 12 42 42 H 1.09001 * 109.46923 * 184.76362 * 14 13 12 43 43 H 1.08995 * 109.47479 * 316.12030 * 15 12 3 44 44 H 1.09004 * 109.47207 * 76.12602 * 15 12 3 45 45 H 1.08998 * 109.47394 * 300.00334 * 16 15 12 46 46 H 1.09004 * 109.46805 * 60.00182 * 16 15 12 47 47 H 1.08998 * 109.46940 * 300.00375 * 17 16 15 48 48 H 1.08997 * 109.46803 * 60.00139 * 17 16 15 49 49 H 0.97005 * 119.99714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 0.8331 5 6 3.5630 1.4450 0.1468 6 6 4.0515 2.8633 0.2904 7 6 4.0593 3.4691 1.5330 8 6 4.5069 4.7704 1.6646 9 6 4.9462 5.4660 0.5537 10 6 4.9331 4.8620 -0.6896 11 6 4.4913 3.5587 -0.8203 12 7 1.6688 2.0931 -1.2637 13 6 0.3101 2.6467 -1.1916 14 6 0.3305 3.9445 -0.3815 15 6 1.7989 1.1625 -2.3929 16 6 1.8018 1.9498 -3.7048 17 6 1.9366 0.9806 -4.8810 18 6 1.9401 1.7562 -6.1731 19 1 1.8551 2.8327 -6.1571 20 6 2.0518 1.0914 -7.3758 21 7 2.1558 -0.2195 -7.3954 22 14 2.0568 2.0527 -8.9775 23 1 3.2010 2.9993 -8.9832 24 1 2.1863 1.1119 -10.1191 25 1 0.7863 2.8112 -9.1035 26 1 -0.3633 0.6742 0.7757 27 1 -0.3633 0.3347 -0.9716 28 1 -0.3634 -1.0088 0.1960 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0139 0.9931 -0.7367 32 1 3.8437 0.8727 1.0309 33 1 3.7157 2.9259 2.4008 34 1 4.5126 5.2438 2.6353 35 1 5.2955 6.4827 0.6566 36 1 5.2722 5.4069 -1.5583 37 1 4.4851 3.0854 -1.7911 38 1 -0.0523 2.8527 -2.1987 39 1 -0.3503 1.9269 -0.7079 40 1 0.7717 3.7551 0.5970 41 1 0.9230 4.6924 -0.9086 42 1 -0.6885 4.3106 -0.2560 43 1 2.7322 0.6072 -2.3005 44 1 0.9600 0.4666 -2.3887 45 1 0.8685 2.5053 -3.7973 46 1 2.6407 2.6458 -3.7090 47 1 2.8697 0.4249 -4.7887 48 1 1.0975 0.2851 -4.8766 49 1 2.2347 -0.6872 -8.2416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120418472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:44 Heat of formation + Delta-G solvation = -6.925157 kcal Electronic energy + Delta-G solvation = -23910.350548 eV Core-core repulsion = 20835.871957 eV Total energy + Delta-G solvation = -3074.478590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73753 -39.43241 -36.02671 -34.53446 -33.47938 -32.99840 -31.59944 -30.92496 -29.28229 -27.58542 -25.11127 -24.74691 -23.30643 -22.81487 -22.13939 -21.75809 -20.28776 -18.44597 -17.49995 -17.06433 -16.60739 -16.23325 -16.10803 -15.79340 -15.67547 -15.49451 -14.54842 -14.43231 -14.24522 -14.10987 -14.07435 -13.70334 -13.55417 -13.24422 -13.04459 -12.90459 -12.76504 -12.63829 -12.50413 -12.45195 -12.38778 -12.11157 -11.97304 -11.82975 -11.68736 -11.58401 -11.42485 -11.26838 -11.17197 -11.00856 -10.54081 -9.64721 -9.39918 -8.90206 -8.19845 -6.30559 0.63769 0.69011 1.38518 1.41592 1.49544 2.40457 3.04312 3.04879 3.13026 3.80747 4.07128 4.08317 4.17876 4.22293 4.24692 4.29904 4.35475 4.39020 4.43624 4.50734 4.62209 4.69843 4.72281 4.78798 4.80680 4.83230 4.89704 4.92429 4.95351 5.02681 5.04275 5.14052 5.16049 5.19269 5.28464 5.30809 5.34850 5.35803 5.42176 5.44949 5.54057 5.73012 5.77176 5.79448 5.87510 5.95469 6.22815 6.30248 6.35417 6.43500 6.85859 7.38383 8.91750 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.004242 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.281440 B = 6599.417079 C = 7640.129698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C 0.094 3.906 4 H 0.090 0.910 5 C -0.071 4.071 6 C -0.065 4.065 7 C -0.127 4.127 8 C -0.126 4.126 9 C -0.136 4.136 10 C -0.136 4.136 11 C -0.110 4.110 12 N -0.525 5.525 13 C 0.028 3.972 14 C -0.130 4.130 15 C 0.073 3.927 16 C -0.085 4.085 17 C 0.030 3.970 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.267 1.267 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.043 0.957 46 H 0.044 0.956 47 H -0.011 1.011 48 H -0.012 1.012 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 6.630 22.211 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C -0.014 4.014 4 H 0.108 0.892 5 C -0.109 4.109 6 C -0.065 4.065 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.129 4.129 12 N -0.249 5.249 13 C -0.100 4.100 14 C -0.188 4.188 15 C -0.055 4.055 16 C -0.124 4.124 17 C -0.008 4.008 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.004 6.882 22.025 23.097 hybrid contribution -0.450 -0.542 -1.462 1.623 sum 0.555 6.340 20.563 21.525 Atomic orbital electron populations 1.22005 0.95656 1.02095 1.01415 1.22256 0.96554 0.97783 1.02885 1.21783 0.94571 0.92901 0.92175 0.89244 1.20680 0.94834 0.92970 1.02419 1.19767 0.97335 0.96241 0.93128 1.21217 1.00688 0.95653 0.96926 1.21359 0.99065 0.94781 0.99215 1.21316 1.00881 1.00587 0.92612 1.21299 1.00574 0.95314 0.98228 1.21033 0.98631 0.95021 0.98175 1.62139 1.25492 1.34781 1.02509 1.22518 0.89717 0.97310 1.00423 1.21634 1.01249 0.96356 0.99565 1.21971 0.99755 0.93580 0.90201 1.21364 0.99928 0.97793 0.93268 1.18932 0.94459 0.94359 0.93049 1.21638 1.50013 0.93699 0.92635 0.92672 1.25942 0.94732 0.95850 1.03087 1.70087 1.51249 1.08637 1.27305 0.85552 0.79134 0.78409 0.78272 1.19285 1.20627 1.19234 0.91417 0.93583 0.92213 0.92679 0.89837 0.92564 0.88921 0.84558 0.84194 0.84858 0.86383 0.88242 0.92814 0.91880 0.92367 0.94036 0.91582 0.92000 0.95291 0.93878 0.93683 0.99219 0.99332 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.14 71.98 0.59 -2.59 16 2 C -0.16 -3.32 4.88 30.59 0.15 -3.17 16 3 C 0.09 2.10 1.74 44.92 0.08 2.18 16 4 H 0.09 1.82 6.44 -2.39 -0.02 1.80 16 5 C -0.07 -1.59 4.91 29.85 0.15 -1.45 16 6 C -0.06 -1.55 4.90 -19.87 -0.10 -1.65 16 7 C -0.13 -2.53 9.72 22.27 0.22 -2.31 16 8 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 9 C -0.14 -2.86 10.05 22.27 0.22 -2.64 16 10 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 11 C -0.11 -3.08 9.57 22.27 0.21 -2.87 16 12 N -0.53 -14.75 3.87 -870.96 -3.37 -18.12 16 13 C 0.03 0.73 4.99 86.30 0.43 1.16 16 14 C -0.13 -2.98 10.07 71.98 0.72 -2.26 16 15 C 0.07 2.53 3.36 86.30 0.29 2.82 16 16 C -0.09 -3.70 5.22 30.60 0.16 -3.54 16 17 C 0.03 1.61 4.97 29.85 0.15 1.76 16 18 C -0.54 -31.88 9.11 25.60 0.23 -31.64 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.00 0.09 5.46 84.65 0.46 0.56 16 21 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 22 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H 0.07 1.19 7.62 -2.39 -0.02 1.17 16 27 H 0.05 1.12 4.87 -2.39 -0.01 1.11 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.41 5.99 -2.38 -0.01 1.39 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.47 6.92 -2.39 -0.02 1.46 16 32 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.10 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.05 1.66 6.25 -2.39 -0.01 1.64 16 39 H 0.06 1.49 4.03 -2.39 -0.01 1.48 16 40 H 0.06 1.22 6.77 -2.39 -0.02 1.21 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 2.20 6.27 -2.39 -0.01 2.19 16 44 H 0.03 1.03 5.80 -2.39 -0.01 1.01 16 45 H 0.04 1.86 6.55 -2.39 -0.02 1.85 16 46 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -65.48 374.17 4.25 -61.23 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.89 Total: 18.08 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 4.41 Total: -51.01 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -3.08 Total: -75.61 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.48 4.25 -61.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120418472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.304 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds