Wall clock time and date at job start Tue Mar 31 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46900 * 109.47202 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00117 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47323 * 299.99605 * 13 12 11 15 15 C 1.53005 * 109.47408 * 60.00175 * 13 12 11 16 16 C 1.53007 * 109.47002 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.46834 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00819 * 0.02562 * 17 16 13 19 19 C 1.37885 * 120.00105 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47256 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47431 * 120.00493 * 21 19 17 24 24 H 1.48506 * 109.46918 * 240.00192 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 28 28 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 30 30 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 32 32 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 33 33 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 34 34 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 35 35 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 36 36 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 37 37 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 38 38 H 1.00903 * 110.99917 * 56.04760 * 11 10 9 39 39 H 1.09003 * 109.47021 * 299.99834 * 12 11 10 40 40 H 1.09002 * 109.47236 * 60.00174 * 12 11 10 41 41 H 1.09002 * 109.46942 * 60.00549 * 14 13 12 42 42 H 1.09007 * 109.47310 * 179.97438 * 14 13 12 43 43 H 1.08993 * 109.47281 * 299.99955 * 14 13 12 44 44 H 1.08998 * 109.46927 * 59.99468 * 15 13 12 45 45 H 1.08993 * 109.47421 * 180.02562 * 15 13 12 46 46 H 1.09007 * 109.46545 * 300.00074 * 15 13 12 47 47 H 1.09003 * 109.47050 * 299.99898 * 16 13 12 48 48 H 1.08993 * 109.47397 * 60.00170 * 16 13 12 49 49 H 0.96996 * 120.00342 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4495 -4.2185 1.4262 12 6 0.1808 -4.6767 2.7958 13 6 -0.5848 -6.0006 2.7496 14 6 -1.9091 -5.7984 2.0105 15 6 0.2537 -7.0494 2.0163 16 6 -0.8642 -6.4781 4.1761 17 6 -1.6177 -7.7824 4.1306 18 1 -1.8716 -8.2266 3.1795 19 6 -1.9822 -8.4094 5.3034 20 7 -1.6726 -7.8688 6.4616 21 14 -2.9156 -10.0264 5.2470 22 1 -3.1401 -10.4193 3.8327 23 1 -2.1247 -11.0787 5.9341 24 1 -4.2247 -9.8662 5.9295 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6581 2.1326 0.0004 29 1 4.1204 2.1326 0.0100 30 1 5.3516 0.0002 0.0096 31 1 4.5118 -2.8187 1.0287 32 1 3.7470 -3.2607 -0.5166 33 1 5.2885 -2.3708 -0.5089 34 1 0.4942 -2.3709 -0.5265 35 1 2.0358 -3.2608 -0.5225 36 1 2.1350 -3.0778 1.9484 37 1 0.5935 -2.1879 1.9444 38 1 0.9471 -4.9215 0.9004 39 1 1.1242 -4.8203 3.3225 40 1 -0.4170 -3.9297 3.3181 41 1 -1.7097 -5.4585 0.9942 42 1 -2.4543 -6.7417 1.9772 43 1 -2.5064 -5.0513 2.5329 44 1 1.1971 -7.1934 2.5429 45 1 -0.2919 -7.9924 1.9830 46 1 0.4531 -6.7094 1.0000 47 1 0.0795 -6.6223 4.7024 48 1 -1.4613 -5.7312 4.6990 49 1 -1.9286 -8.3099 7.2867 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132691647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:00 Heat of formation + Delta-G solvation = -12.266459 kcal Electronic energy + Delta-G solvation = -22931.921645 eV Core-core repulsion = 19857.211439 eV Total energy + Delta-G solvation = -3074.710207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02853 -37.67920 -35.20894 -33.74230 -33.01727 -31.96092 -29.15804 -27.26925 -26.80847 -26.72976 -26.30502 -24.92880 -22.98603 -21.86292 -20.83338 -20.60691 -17.82438 -16.42938 -16.31620 -16.18634 -15.40402 -14.95170 -14.64151 -14.38381 -13.96308 -13.79401 -13.47570 -13.33308 -13.09915 -13.00159 -12.87979 -12.66847 -12.38087 -12.28334 -11.98613 -11.92643 -11.74977 -11.42465 -11.32013 -10.99237 -10.91763 -10.85148 -10.73601 -10.68060 -10.47050 -10.23568 -10.08997 -9.66085 -9.01569 -8.82855 -8.69325 -8.63953 -8.30565 -8.06448 -5.94876 -3.94820 1.21981 1.22108 3.33245 3.41107 3.44619 3.55870 4.37134 4.51075 4.62700 4.68197 4.78813 4.94691 5.01412 5.14851 5.25435 5.27314 5.40996 5.41725 5.43804 5.51779 5.54272 5.64429 5.65720 5.73167 5.76941 5.78437 5.91348 5.97725 6.01317 6.13722 6.18447 6.29211 6.34948 6.36203 6.41964 6.53438 6.59663 6.68535 6.81339 6.85189 6.90261 7.23204 7.25010 7.28585 7.42610 7.69726 7.73784 7.87923 8.05768 8.50247 9.10922 9.67920 11.16890 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.031572 B = 0.002679 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.660162 B =10448.591753 C =10690.941338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.079 4.079 7 C -0.119 4.119 8 C -0.078 4.078 9 C -0.083 4.083 10 C 0.066 3.934 11 N -0.687 5.687 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 16.086 -14.769 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.079 4.079 7 C -0.175 4.175 8 C -0.079 4.079 9 C -0.121 4.121 10 C -0.064 4.064 11 N -0.319 5.319 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.533 16.351 -14.649 23.934 hybrid contribution 0.502 -1.026 0.544 1.265 sum 10.035 15.324 -14.106 23.119 Atomic orbital electron populations 1.20893 0.91074 1.03361 1.02419 1.19808 0.96148 0.92486 0.99141 1.20996 0.94236 0.97408 1.01905 1.21063 0.94326 0.97810 1.00596 1.20972 0.99536 0.92054 1.01998 1.19782 0.93232 0.95377 0.99549 1.20877 0.99623 0.94495 1.02529 1.19602 0.92874 0.94763 1.00665 1.20653 1.00242 0.93439 0.97740 1.21855 0.96248 0.93093 0.95187 1.60576 1.50414 1.04967 1.15907 1.22097 0.98273 0.97827 0.87602 1.20626 0.94461 0.91613 0.99156 1.21594 0.96502 1.00856 0.98337 1.21769 0.99364 1.00105 0.97370 1.19131 0.96524 0.95966 0.88834 1.21280 1.34933 1.06000 0.92136 0.92234 1.25026 0.96355 0.97588 0.95711 1.69978 1.47430 1.39204 0.97172 0.86608 0.79706 0.84110 0.78017 1.19772 1.21211 1.21167 0.91198 0.90419 0.91716 0.86321 0.86369 0.86380 0.91080 0.91009 0.91768 0.89946 0.90911 0.95654 0.91223 0.84423 0.95958 0.91658 0.93878 0.92732 0.94217 0.94154 0.91731 0.94803 0.96954 0.96697 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.19 36.00 0.33 -0.78 16 2 C -0.08 -0.80 5.88 -104.63 -0.62 -1.41 16 3 C -0.13 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.13 -1.23 9.70 -39.58 -0.38 -1.62 16 6 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 7 C -0.12 -1.04 9.61 36.01 0.35 -0.70 16 8 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 9 C -0.08 -0.89 4.50 -27.88 -0.13 -1.02 16 10 C 0.07 0.82 5.53 -3.83 -0.02 0.80 16 11 N -0.69 -9.83 5.71 -113.78 -0.65 -10.48 16 12 C 0.07 1.23 4.65 -3.83 -0.02 1.21 16 13 C -0.06 -1.16 0.60 -154.50 -0.09 -1.25 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 16 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 17 C -0.51 -13.86 7.65 -34.44 -0.26 -14.12 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.78 5.84 -51.93 -0.30 0.47 16 27 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 33 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.08 0.89 6.72 -51.93 -0.35 0.54 16 35 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 38 H 0.34 4.58 6.77 -39.29 -0.27 4.31 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 42 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 46 H 0.03 0.52 6.57 -51.92 -0.34 0.18 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -29.69 377.00 -10.34 -40.02 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.69 Total: 1.12 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -2.39 Total: -26.73 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.09 Total: -36.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.69 -10.34 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132691647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.757 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds