Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46900 * 109.47202 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00117 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47323 * 299.99605 * 13 12 11 15 15 C 1.53005 * 109.47408 * 60.00175 * 13 12 11 16 16 C 1.53007 * 109.47002 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.46834 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00819 * 0.02562 * 17 16 13 19 19 C 1.37885 * 120.00105 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47256 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47431 * 120.00493 * 21 19 17 24 24 H 1.48506 * 109.46918 * 240.00192 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 28 28 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 30 30 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 32 32 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 33 33 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 34 34 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 35 35 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 36 36 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 37 37 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 38 38 H 1.00903 * 110.99917 * 56.04760 * 11 10 9 39 39 H 1.09003 * 109.47021 * 299.99834 * 12 11 10 40 40 H 1.09002 * 109.47236 * 60.00174 * 12 11 10 41 41 H 1.09002 * 109.46942 * 60.00549 * 14 13 12 42 42 H 1.09007 * 109.47310 * 179.97438 * 14 13 12 43 43 H 1.08993 * 109.47281 * 299.99955 * 14 13 12 44 44 H 1.08998 * 109.46927 * 59.99468 * 15 13 12 45 45 H 1.08993 * 109.47421 * 180.02562 * 15 13 12 46 46 H 1.09007 * 109.46545 * 300.00074 * 15 13 12 47 47 H 1.09003 * 109.47050 * 299.99898 * 16 13 12 48 48 H 1.08993 * 109.47397 * 60.00170 * 16 13 12 49 49 H 0.96996 * 120.00342 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4495 -4.2185 1.4262 12 6 0.1808 -4.6767 2.7958 13 6 -0.5848 -6.0006 2.7496 14 6 -1.9091 -5.7984 2.0105 15 6 0.2537 -7.0494 2.0163 16 6 -0.8642 -6.4781 4.1761 17 6 -1.6177 -7.7824 4.1306 18 1 -1.8716 -8.2266 3.1795 19 6 -1.9822 -8.4094 5.3034 20 7 -1.6726 -7.8688 6.4616 21 14 -2.9156 -10.0264 5.2470 22 1 -3.1401 -10.4193 3.8327 23 1 -2.1247 -11.0787 5.9341 24 1 -4.2247 -9.8662 5.9295 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6581 2.1326 0.0004 29 1 4.1204 2.1326 0.0100 30 1 5.3516 0.0002 0.0096 31 1 4.5118 -2.8187 1.0287 32 1 3.7470 -3.2607 -0.5166 33 1 5.2885 -2.3708 -0.5089 34 1 0.4942 -2.3709 -0.5265 35 1 2.0358 -3.2608 -0.5225 36 1 2.1350 -3.0778 1.9484 37 1 0.5935 -2.1879 1.9444 38 1 0.9471 -4.9215 0.9004 39 1 1.1242 -4.8203 3.3225 40 1 -0.4170 -3.9297 3.3181 41 1 -1.7097 -5.4585 0.9942 42 1 -2.4543 -6.7417 1.9772 43 1 -2.5064 -5.0513 2.5329 44 1 1.1971 -7.1934 2.5429 45 1 -0.2919 -7.9924 1.9830 46 1 0.4531 -6.7094 1.0000 47 1 0.0795 -6.6223 4.7024 48 1 -1.4613 -5.7312 4.6990 49 1 -1.9286 -8.3099 7.2867 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132691647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = -26.541929 kcal Electronic energy + Delta-G solvation = -22932.540676 eV Core-core repulsion = 19857.211439 eV Total energy + Delta-G solvation = -3075.329237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77493 -39.17866 -36.44474 -34.60933 -34.44850 -33.43480 -30.16664 -28.90102 -27.90789 -27.86190 -27.49892 -26.38956 -24.52576 -23.21817 -21.54935 -21.40550 -19.47334 -18.32998 -17.28173 -17.05089 -16.67406 -16.44041 -15.83014 -15.56094 -15.12740 -14.95562 -14.84673 -14.28942 -14.12177 -14.02035 -13.88168 -13.77535 -13.66807 -13.52332 -13.41570 -13.01725 -12.75253 -12.70550 -12.65816 -12.46065 -12.33591 -12.22745 -12.14336 -12.05467 -11.86580 -11.62392 -11.52481 -11.35185 -10.85218 -10.72711 -10.50912 -9.44428 -9.41177 -9.29480 -8.13731 -6.20682 0.47368 0.48977 1.40447 1.41482 1.53748 2.44079 2.81146 3.20277 3.28714 3.89259 3.94259 4.07240 4.12183 4.16729 4.20712 4.25891 4.36561 4.42586 4.45862 4.51278 4.66038 4.68773 4.76480 4.80230 4.82252 4.85229 4.87750 4.94805 4.97076 5.03707 5.08804 5.10203 5.15211 5.23430 5.23930 5.40276 5.41625 5.52944 5.55134 5.60004 5.63360 5.66648 5.69700 5.83843 5.88485 5.93615 6.08210 6.19181 6.37392 6.55953 6.94886 7.46700 8.98973 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.031572 B = 0.002679 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.660162 B =10448.591753 C =10690.941338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.092 4.092 7 C -0.118 4.118 8 C -0.096 4.096 9 C -0.072 4.072 10 C 0.072 3.928 11 N -0.680 5.680 12 C 0.083 3.917 13 C -0.055 4.055 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.039 3.961 17 C -0.511 4.511 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.345 0.655 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.035 0.965 45 H 0.047 0.953 46 H 0.069 0.931 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 16.266 -16.865 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.092 4.092 7 C -0.174 4.174 8 C -0.097 4.097 9 C -0.109 4.109 10 C -0.057 4.057 11 N -0.312 5.312 12 C -0.046 4.046 13 C -0.055 4.055 14 C -0.164 4.164 15 C -0.179 4.179 16 C 0.001 3.999 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.782 3.218 22 H -0.183 1.183 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.165 0.835 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.001 0.999 48 H 0.001 0.999 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.986 16.533 -16.771 25.579 hybrid contribution 0.408 -0.988 1.201 1.608 sum 10.395 15.545 -15.569 24.333 Atomic orbital electron populations 1.20877 0.90478 1.03208 1.02892 1.20052 0.96828 0.92830 0.99299 1.21272 0.94735 0.97852 1.01728 1.21392 0.94423 0.98711 0.99659 1.21266 1.00574 0.92003 1.01751 1.20047 0.93313 0.96361 0.99509 1.20889 1.00184 0.93857 1.02466 1.19695 0.93311 0.94848 1.01830 1.20519 1.00444 0.93805 0.96150 1.21815 0.95528 0.91765 0.96633 1.60496 1.51215 1.05779 1.13693 1.21795 0.97318 0.96149 0.89369 1.20490 0.95767 0.93359 0.95885 1.21500 0.95573 0.99783 0.99521 1.21687 0.98434 0.98707 0.99113 1.19022 0.94190 0.94808 0.91865 1.21651 1.34387 1.06537 0.92382 0.91484 1.25943 0.97508 1.01415 0.95405 1.70120 1.48975 1.41051 0.97926 0.85512 0.78118 0.79523 0.78611 1.18349 1.20824 1.20901 0.90369 0.91522 0.90890 0.84740 0.84255 0.84720 0.91482 0.90797 0.90423 0.89957 0.89977 0.95960 0.92140 0.83503 0.96701 0.92852 0.91189 0.94245 0.95231 0.94534 0.93404 0.91186 0.99891 0.99904 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.19 71.24 0.65 -1.38 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.14 -2.47 9.70 22.27 0.22 -2.25 16 4 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 5 C -0.14 -2.43 9.70 22.27 0.22 -2.21 16 6 C -0.09 -1.79 5.88 -19.86 -0.12 -1.91 16 7 C -0.12 -1.88 9.61 71.24 0.68 -1.19 16 8 C -0.10 -1.99 5.13 -19.87 -0.10 -2.09 16 9 C -0.07 -1.43 4.50 29.85 0.13 -1.30 16 10 C 0.07 1.72 5.53 86.30 0.48 2.20 16 11 N -0.68 -18.40 5.71 -513.89 -2.94 -21.33 16 12 C 0.08 2.88 4.65 86.30 0.40 3.28 16 13 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 14 C -0.11 -4.04 8.06 71.98 0.58 -3.45 16 15 C -0.12 -4.36 7.89 71.98 0.57 -3.79 16 16 C 0.04 2.03 4.04 29.85 0.12 2.15 16 17 C -0.51 -28.44 7.65 25.60 0.20 -28.24 16 18 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 20 N -0.94 -57.91 13.29 21.45 0.28 -57.63 16 21 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.29 5.84 -2.39 -0.01 1.27 16 27 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 28 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 5.95 -2.39 -0.01 1.11 16 33 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.08 1.64 6.72 -2.39 -0.02 1.63 16 35 H 0.08 1.47 5.95 -2.39 -0.01 1.46 16 36 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 1.58 7.38 -2.38 -0.02 1.56 16 38 H 0.35 8.48 6.77 -89.69 -0.61 7.87 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.26 7.60 -2.39 -0.02 2.25 16 42 H 0.04 1.59 6.62 -2.38 -0.02 1.57 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 46 H 0.07 1.98 6.57 -2.38 -0.02 1.97 16 47 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 48 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 49 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.53 377.00 4.24 -60.28 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.30 Total: 18.04 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 4.57 Total: -46.05 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.65 Total: -78.96 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.53 4.24 -60.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132691647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.740 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds