Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46901 * 109.47129 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99847 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.46960 * 300.00043 * 8 7 6 10 10 C 1.53003 * 109.46719 * 59.99878 * 8 7 6 11 11 C 1.53000 * 109.46988 * 179.97438 * 8 7 6 12 12 C 1.50700 * 109.46783 * 180.02562 * 11 8 7 13 13 H 1.08001 * 120.00286 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99882 * 180.02562 * 12 11 8 15 15 N 1.31512 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46784 * 90.00211 * 16 14 12 18 18 H 1.48499 * 109.46923 * 209.99913 * 16 14 12 19 19 H 1.48501 * 109.47172 * 330.00348 * 16 14 12 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.38237 * 119.99936 * 299.72798 * 20 2 1 22 22 C 1.38239 * 120.00019 * 179.79019 * 21 20 2 23 23 C 1.38233 * 119.99539 * 0.43796 * 22 21 20 24 24 C 1.38231 * 120.00493 * 359.81540 * 23 22 21 25 25 C 1.38236 * 119.99974 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 31 31 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 32 32 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 33 33 H 1.00901 * 111.00412 * 56.04152 * 6 5 4 34 34 H 1.08998 * 109.46972 * 299.99380 * 7 6 5 35 35 H 1.08998 * 109.47345 * 60.00054 * 7 6 5 36 36 H 1.08999 * 109.47471 * 60.00092 * 9 8 7 37 37 H 1.09007 * 109.46997 * 179.97438 * 9 8 7 38 38 H 1.08998 * 109.47399 * 299.99569 * 9 8 7 39 39 H 1.08998 * 109.47506 * 60.00118 * 10 8 7 40 40 H 1.09007 * 109.46917 * 180.02562 * 10 8 7 41 41 H 1.08999 * 109.47358 * 299.99692 * 10 8 7 42 42 H 1.08998 * 109.47371 * 299.99964 * 11 8 7 43 43 H 1.08998 * 109.46990 * 60.00664 * 11 8 7 44 44 H 0.97006 * 119.99586 * 179.97438 * 15 14 12 45 45 H 1.07998 * 120.00490 * 359.97438 * 21 20 2 46 46 H 1.08000 * 120.00241 * 180.27418 * 22 21 20 47 47 H 1.08006 * 119.99896 * 179.83904 * 23 22 21 48 48 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.00273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1255 -0.6232 3.6947 7 6 1.7551 0.1088 4.9133 8 6 2.2811 -0.6413 6.1387 9 6 1.6694 -2.0430 6.1799 10 6 3.8048 -0.7521 6.0535 11 6 1.8959 0.1214 7.4078 12 6 2.4146 -0.6171 8.6146 13 1 2.9637 -1.5386 8.4891 14 6 2.1872 -0.1170 9.8792 15 7 1.5181 1.0048 10.0322 16 14 2.8295 -1.0329 11.3753 17 1 4.1963 -0.5521 11.7007 18 1 1.9298 -0.7861 12.5306 19 1 2.8731 -2.4883 11.0836 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0356 -1.4463 22 6 2.1601 -2.6860 -2.5772 23 6 2.9541 -2.0140 -3.4876 24 6 3.2878 -0.6905 -3.2691 25 6 2.8270 -0.0387 -2.1405 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7995 1.2056 31 1 2.0700 1.0675 2.4493 32 1 0.5490 0.1472 2.5389 33 1 3.1234 -0.7653 3.6478 34 1 2.1906 1.1076 4.8837 35 1 0.6696 0.1874 4.9742 36 1 1.9442 -2.5862 5.2758 37 1 2.0445 -2.5776 7.0527 38 1 0.5840 -1.9642 6.2406 39 1 4.2406 0.2465 6.0240 40 1 4.1796 -1.2869 6.9262 41 1 4.0796 -1.2953 5.1493 42 1 2.3320 1.1199 7.3782 43 1 0.8105 0.2006 7.4687 44 1 1.3578 1.3564 10.9219 45 1 1.0861 -2.5618 -0.7330 46 1 1.8991 -3.7200 -2.7481 47 1 3.3134 -2.5229 -4.3698 48 1 3.9077 -0.1652 -3.9806 49 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135169449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = -12.489355 kcal Electronic energy + Delta-G solvation = -22478.137561 eV Core-core repulsion = 19403.417689 eV Total energy + Delta-G solvation = -3074.719872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77473 -37.79617 -36.24397 -33.85100 -32.15100 -31.13576 -30.07803 -28.22484 -26.84951 -26.29693 -25.21266 -24.00992 -22.93744 -22.31296 -21.57469 -19.98299 -17.80038 -17.12092 -16.23606 -15.88222 -15.49543 -15.22223 -14.78373 -14.34883 -14.25398 -14.01087 -13.63801 -13.52597 -13.34297 -13.10565 -12.62850 -12.45737 -12.32788 -12.13473 -11.96620 -11.72465 -11.57048 -11.41549 -11.07949 -10.94259 -10.85138 -10.76710 -10.74362 -10.54355 -10.43557 -10.22359 -10.08463 -9.65176 -9.14171 -9.00692 -8.89448 -8.78623 -8.29780 -8.03947 -5.94301 -3.94239 1.14211 1.17913 3.34548 3.41095 3.44219 3.56124 4.30546 4.49567 4.52817 4.64269 4.77384 4.86806 4.93973 5.05553 5.20242 5.25880 5.31309 5.39933 5.41505 5.42567 5.61598 5.70634 5.75086 5.79370 5.80408 5.84964 5.87909 5.95979 6.01475 6.14551 6.19750 6.27508 6.29380 6.30618 6.37855 6.48127 6.54660 6.69639 6.78702 6.82537 6.85949 7.23840 7.26929 7.29420 7.45165 7.70990 7.74846 7.88577 8.06214 8.50833 9.11149 9.68365 11.17364 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.002317 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.172489 B =12083.591584 C =12294.211769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 H 0.076 0.924 4 C -0.107 4.107 5 C 0.056 3.944 6 N -0.688 5.688 7 C 0.070 3.930 8 C -0.058 4.058 9 C -0.116 4.116 10 C -0.129 4.129 11 C 0.033 3.967 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.053 3.947 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.070 4.070 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.337 0.663 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.258 0.742 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -3.322 -26.040 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.073 4.073 6 N -0.319 5.319 7 C -0.058 4.058 8 C -0.059 4.059 9 C -0.173 4.173 10 C -0.186 4.186 11 C -0.004 4.004 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.070 4.070 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.457 -3.627 -25.864 26.121 hybrid contribution 0.958 0.439 0.852 1.355 sum 1.415 -3.189 -25.011 25.253 Atomic orbital electron populations 1.21893 0.94122 1.02304 1.01883 1.20166 0.96201 0.98999 0.91781 0.90557 1.21613 1.00818 0.99824 0.92245 1.22005 1.00647 0.94795 0.89864 1.60573 1.19530 1.50430 1.01397 1.22098 1.00185 0.94345 0.89203 1.20625 0.94417 0.96176 0.94656 1.21593 0.99488 0.96124 1.00093 1.21771 0.96270 1.00323 1.00267 1.19127 0.96516 0.94761 0.90024 1.21241 1.34283 1.08117 0.90760 0.92299 1.25026 0.95537 0.95100 0.99034 1.69971 1.41061 1.20307 1.22436 0.86658 0.78648 0.80250 0.82825 1.20848 1.21394 1.19916 1.19927 0.96969 0.94244 0.95904 1.21056 1.00151 0.94349 0.97517 1.21162 0.98077 0.99872 0.94629 1.21128 0.99070 0.94942 0.99556 1.21128 1.00104 0.95001 0.97609 1.21098 0.98221 0.99909 0.94546 0.92329 0.91791 0.92843 0.90859 0.92143 0.95890 0.91011 0.84437 0.96001 0.91679 0.93897 0.92734 0.94216 0.94152 0.91744 0.94804 0.96955 0.96692 0.93198 0.85941 0.86197 0.86373 0.86290 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.76 37.16 0.33 -0.92 16 2 C -0.05 -0.47 2.56 -91.77 -0.24 -0.71 16 3 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 4 C -0.11 -1.10 4.68 -26.73 -0.13 -1.23 16 5 C 0.06 0.68 5.44 -3.82 -0.02 0.66 16 6 N -0.69 -10.06 5.71 -113.77 -0.65 -10.71 16 7 C 0.07 1.23 4.65 -3.82 -0.02 1.22 16 8 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 9 C -0.12 -2.28 8.06 37.15 0.30 -1.98 16 10 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 11 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 12 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 13 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 16 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.07 -0.66 4.78 -104.62 -0.50 -1.16 16 21 C -0.11 -1.03 8.76 -39.58 -0.35 -1.38 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.13 -1.04 10.05 -39.59 -0.40 -1.44 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.06 9.67 -39.58 -0.38 -1.45 16 26 H 0.06 0.50 7.41 -51.93 -0.38 0.11 16 27 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 33 H 0.34 4.77 6.77 -39.29 -0.27 4.51 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 37 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.12 1.03 7.16 -52.49 -0.38 0.66 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -29.66 379.71 -10.54 -40.20 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.86 Total: 0.97 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -2.47 Total: -26.61 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.09 Total: -36.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.66 -10.54 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135169449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.706 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds