Wall clock time and date at job start Tue Mar 31 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46901 * 109.47129 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99847 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.46960 * 300.00043 * 8 7 6 10 10 C 1.53003 * 109.46719 * 59.99878 * 8 7 6 11 11 C 1.53000 * 109.46988 * 179.97438 * 8 7 6 12 12 C 1.50700 * 109.46783 * 180.02562 * 11 8 7 13 13 H 1.08001 * 120.00286 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99882 * 180.02562 * 12 11 8 15 15 N 1.31512 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46784 * 90.00211 * 16 14 12 18 18 H 1.48499 * 109.46923 * 209.99913 * 16 14 12 19 19 H 1.48501 * 109.47172 * 330.00348 * 16 14 12 20 20 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 21 21 C 1.38237 * 119.99936 * 299.72798 * 20 2 1 22 22 C 1.38239 * 120.00019 * 179.79019 * 21 20 2 23 23 C 1.38233 * 119.99539 * 0.43796 * 22 21 20 24 24 C 1.38231 * 120.00493 * 359.81540 * 23 22 21 25 25 C 1.38236 * 119.99974 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 29 29 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 30 30 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 31 31 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 32 32 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 33 33 H 1.00901 * 111.00412 * 56.04152 * 6 5 4 34 34 H 1.08998 * 109.46972 * 299.99380 * 7 6 5 35 35 H 1.08998 * 109.47345 * 60.00054 * 7 6 5 36 36 H 1.08999 * 109.47471 * 60.00092 * 9 8 7 37 37 H 1.09007 * 109.46997 * 179.97438 * 9 8 7 38 38 H 1.08998 * 109.47399 * 299.99569 * 9 8 7 39 39 H 1.08998 * 109.47506 * 60.00118 * 10 8 7 40 40 H 1.09007 * 109.46917 * 180.02562 * 10 8 7 41 41 H 1.08999 * 109.47358 * 299.99692 * 10 8 7 42 42 H 1.08998 * 109.47371 * 299.99964 * 11 8 7 43 43 H 1.08998 * 109.46990 * 60.00664 * 11 8 7 44 44 H 0.97006 * 119.99586 * 179.97438 * 15 14 12 45 45 H 1.07998 * 120.00490 * 359.97438 * 21 20 2 46 46 H 1.08000 * 120.00241 * 180.27418 * 22 21 20 47 47 H 1.08006 * 119.99896 * 179.83904 * 23 22 21 48 48 H 1.08002 * 120.00573 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.00273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1255 -0.6232 3.6947 7 6 1.7551 0.1088 4.9133 8 6 2.2811 -0.6413 6.1387 9 6 1.6694 -2.0430 6.1799 10 6 3.8048 -0.7521 6.0535 11 6 1.8959 0.1214 7.4078 12 6 2.4146 -0.6171 8.6146 13 1 2.9637 -1.5386 8.4891 14 6 2.1872 -0.1170 9.8792 15 7 1.5181 1.0048 10.0322 16 14 2.8295 -1.0329 11.3753 17 1 4.1963 -0.5521 11.7007 18 1 1.9298 -0.7861 12.5306 19 1 2.8731 -2.4883 11.0836 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0356 -1.4463 22 6 2.1601 -2.6860 -2.5772 23 6 2.9541 -2.0140 -3.4876 24 6 3.2878 -0.6905 -3.2691 25 6 2.8270 -0.0387 -2.1405 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1264 -0.7995 1.2056 31 1 2.0700 1.0675 2.4493 32 1 0.5490 0.1472 2.5389 33 1 3.1234 -0.7653 3.6478 34 1 2.1906 1.1076 4.8837 35 1 0.6696 0.1874 4.9742 36 1 1.9442 -2.5862 5.2758 37 1 2.0445 -2.5776 7.0527 38 1 0.5840 -1.9642 6.2406 39 1 4.2406 0.2465 6.0240 40 1 4.1796 -1.2869 6.9262 41 1 4.0796 -1.2953 5.1493 42 1 2.3320 1.1199 7.3782 43 1 0.8105 0.2006 7.4687 44 1 1.3578 1.3564 10.9219 45 1 1.0861 -2.5618 -0.7330 46 1 1.8991 -3.7200 -2.7481 47 1 3.3134 -2.5229 -4.3698 48 1 3.9077 -0.1652 -3.9806 49 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135169449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:39 Heat of formation + Delta-G solvation = -26.527890 kcal Electronic energy + Delta-G solvation = -22478.746318 eV Core-core repulsion = 19403.417689 eV Total energy + Delta-G solvation = -3075.328629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42786 -39.23433 -37.25162 -35.23715 -34.01751 -31.74603 -30.91947 -29.35379 -28.61612 -27.88600 -26.57270 -25.15730 -23.97767 -23.50798 -22.51209 -20.72531 -19.44652 -18.32822 -17.77157 -16.92244 -16.64529 -16.18617 -16.05243 -15.57726 -15.43097 -15.15369 -14.68271 -14.55244 -14.43914 -14.11059 -13.93088 -13.86012 -13.55767 -13.47289 -13.07435 -12.92387 -12.68771 -12.67523 -12.46097 -12.37752 -12.23231 -12.14696 -12.08069 -11.91772 -11.75447 -11.49292 -11.39367 -11.29803 -10.84929 -10.70359 -10.50215 -9.76685 -9.53866 -9.26885 -8.13646 -6.20610 0.50967 0.55336 1.41049 1.41714 1.52493 2.44017 2.92056 3.20074 3.28865 3.76400 3.90607 4.10803 4.18205 4.21117 4.24570 4.30262 4.33246 4.38575 4.45947 4.51906 4.61847 4.68032 4.73812 4.75919 4.78820 4.83725 4.96482 5.01111 5.07604 5.08877 5.14927 5.19921 5.22567 5.23033 5.23788 5.38848 5.40910 5.52215 5.54322 5.59039 5.64678 5.66694 5.68337 5.81783 5.87971 5.93253 6.12619 6.18801 6.37798 6.56342 6.94441 7.46541 8.98668 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.002317 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.172489 B =12083.591584 C =12294.211769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 H 0.079 0.921 4 C -0.096 4.096 5 C 0.058 3.942 6 N -0.684 5.684 7 C 0.083 3.917 8 C -0.055 4.055 9 C -0.106 4.106 10 C -0.122 4.122 11 C 0.039 3.961 12 C -0.513 4.513 13 H 0.066 0.934 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.957 3.043 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.082 4.082 21 C -0.126 4.126 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.067 0.933 42 H -0.017 1.017 43 H -0.016 1.016 44 H 0.259 0.741 45 H 0.125 0.875 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -4.628 -27.548 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.097 0.903 4 C -0.134 4.134 5 C -0.071 4.071 6 N -0.317 5.317 7 C -0.047 4.047 8 C -0.056 4.056 9 C -0.164 4.164 10 C -0.180 4.180 11 C 0.001 3.999 12 C -0.551 4.551 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.579 5.579 16 Si 0.783 3.217 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.082 4.082 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.068 0.932 45 H 0.143 0.857 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.511 -4.946 -27.392 27.876 hybrid contribution 0.616 0.863 1.243 1.634 sum 2.127 -4.083 -26.149 26.551 Atomic orbital electron populations 1.21872 0.93904 1.02313 1.01914 1.20090 0.96322 0.98938 0.91180 0.90262 1.21491 1.00677 0.99407 0.91787 1.22051 1.00578 0.95036 0.89452 1.60514 1.19972 1.50138 1.01030 1.21801 0.99388 0.93902 0.89571 1.20495 0.95768 0.96046 0.93264 1.21497 0.98736 0.95609 1.00537 1.21688 0.94730 1.00401 1.01151 1.19016 0.94159 0.93985 0.92692 1.21615 1.33705 1.08244 0.91549 0.91597 1.25945 0.95906 0.95984 1.02471 1.70114 1.42609 1.22050 1.23155 0.85556 0.78068 0.79358 0.78742 1.20061 1.21277 1.18706 1.19989 0.97558 0.94504 0.96174 1.21200 1.00585 0.94523 0.98077 1.21431 0.98010 1.00755 0.94471 1.21441 0.98698 0.95086 1.00115 1.21423 1.00103 0.95302 0.97740 1.21320 0.98309 1.00562 0.94841 0.92344 0.92082 0.92457 0.91178 0.92229 0.95643 0.91089 0.83820 0.96637 0.92623 0.91383 0.94298 0.95128 0.94525 0.93407 0.91411 0.99832 0.99778 0.93188 0.85720 0.84688 0.84446 0.84491 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.76 71.98 0.63 -1.66 16 2 C -0.05 -0.77 2.56 -11.54 -0.03 -0.80 16 3 H 0.08 1.27 7.88 -2.39 -0.02 1.25 16 4 C -0.10 -1.81 4.68 30.59 0.14 -1.67 16 5 C 0.06 1.31 5.44 86.30 0.47 1.78 16 6 N -0.68 -18.84 5.71 -513.87 -2.94 -21.78 16 7 C 0.08 2.87 4.65 86.31 0.40 3.27 16 8 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 9 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 10 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 11 C 0.04 2.05 4.04 29.85 0.12 2.17 16 12 C -0.51 -28.65 7.65 25.60 0.20 -28.45 16 13 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 14 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 15 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 16 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 20 C -0.08 -1.43 4.78 -19.87 -0.09 -1.52 16 21 C -0.13 -2.14 8.76 22.27 0.20 -1.95 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.14 -1.92 10.05 22.27 0.22 -1.70 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.13 -2.15 9.67 22.27 0.22 -1.94 16 26 H 0.06 0.93 7.41 -2.39 -0.02 0.91 16 27 H 0.06 1.00 6.56 -2.39 -0.02 0.99 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.39 7.56 -2.38 -0.02 1.37 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 1.65 6.56 -2.39 -0.02 1.63 16 33 H 0.34 8.84 6.77 -89.69 -0.61 8.23 16 34 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.26 7.60 -2.39 -0.02 2.25 16 37 H 0.04 1.59 6.62 -2.38 -0.02 1.58 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.89 6.62 -2.38 -0.02 1.87 16 41 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 45 H 0.12 1.97 7.16 -2.91 -0.02 1.95 16 46 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.13 1.74 7.95 -2.91 -0.02 1.72 16 Total: -1.00 -63.98 379.71 4.16 -59.82 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.29 Total: 18.08 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 4.50 Total: -45.42 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.65 Total: -79.29 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.98 4.16 -59.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135169449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.294 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds