Wall clock time and date at job start Tue Mar 31 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47106 * 2 1 4 4 C 1.46897 * 110.99753 * 301.40898 * 3 2 1 5 5 C 1.50699 * 109.47018 * 194.13312 * 4 3 2 6 6 C 1.38256 * 120.00425 * 256.30547 * 5 4 3 7 7 C 1.38215 * 119.99969 * 180.02562 * 6 5 4 8 8 C 1.38260 * 119.99728 * 359.97438 * 7 6 5 9 9 C 1.38205 * 120.00461 * 359.97438 * 8 7 6 10 10 C 1.38218 * 119.99417 * 76.03407 * 5 4 3 11 11 C 1.50701 * 120.00197 * 359.97438 * 10 5 4 12 12 C 1.46906 * 110.99914 * 65.36393 * 3 2 1 13 13 C 1.52997 * 109.47251 * 86.91022 * 12 3 2 14 14 C 1.53001 * 109.46899 * 294.90137 * 13 12 3 15 15 C 1.53002 * 109.46835 * 54.90136 * 13 12 3 16 16 C 1.52995 * 109.47093 * 174.90180 * 13 12 3 17 17 C 1.50701 * 109.47087 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00183 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00107 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99724 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00145 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47515 * 89.99436 * 21 19 17 23 23 H 1.48507 * 109.47103 * 209.99939 * 21 19 17 24 24 H 1.48508 * 109.46696 * 329.99300 * 21 19 17 25 25 H 1.08997 * 109.46749 * 64.32592 * 1 2 3 26 26 H 1.08996 * 109.46612 * 184.31809 * 1 2 3 27 27 H 1.08992 * 109.47060 * 304.32364 * 1 2 3 28 28 H 1.09001 * 109.47564 * 240.00102 * 2 1 3 29 29 H 1.08996 * 109.47221 * 119.99402 * 2 1 3 30 30 H 1.08995 * 109.47655 * 314.13805 * 4 3 2 31 31 H 1.09001 * 109.46999 * 74.14161 * 4 3 2 32 32 H 1.07996 * 119.99872 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.00042 * 179.97438 * 7 6 5 34 34 H 1.08008 * 119.99378 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.99972 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.47132 * 94.22242 * 11 10 5 37 37 H 1.09003 * 109.46529 * 214.22208 * 11 10 5 38 38 H 1.08994 * 109.46861 * 334.21534 * 11 10 5 39 39 H 1.08999 * 109.46572 * 206.91270 * 12 3 2 40 40 H 1.09001 * 109.46758 * 326.90836 * 12 3 2 41 41 H 1.08998 * 109.47361 * 71.23096 * 14 13 12 42 42 H 1.09007 * 109.46920 * 191.22590 * 14 13 12 43 43 H 1.08992 * 109.47356 * 311.22355 * 14 13 12 44 44 H 1.09000 * 109.47503 * 59.99873 * 15 13 12 45 45 H 1.09003 * 109.46821 * 180.02562 * 15 13 12 46 46 H 1.09001 * 109.47236 * 299.99955 * 15 13 12 47 47 H 1.09005 * 109.47265 * 299.99895 * 16 13 12 48 48 H 1.09002 * 109.47038 * 59.99890 * 16 13 12 49 49 H 0.97000 * 120.00018 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5213 2.1196 -1.1705 5 6 2.3014 3.3990 -1.3301 6 6 1.7361 4.6045 -0.9576 7 6 2.4515 5.7779 -1.1046 8 6 3.7325 5.7461 -1.6237 9 6 4.2980 4.5410 -1.9951 10 6 3.5842 3.3666 -1.8438 11 6 4.2028 2.0519 -2.2437 12 6 1.6562 2.0720 1.2467 13 6 2.7292 1.8095 2.3052 14 6 2.7458 0.3203 2.6561 15 6 4.0975 2.2197 1.7570 16 6 2.4172 2.6259 3.5610 17 6 3.4745 2.3678 4.6034 18 1 4.2879 1.6896 4.3913 19 6 3.4035 2.9974 5.8280 20 7 2.4133 3.8236 6.0861 21 14 4.7144 2.6781 7.1198 22 1 5.8179 3.6585 6.9583 23 1 4.1203 2.8199 8.4735 24 1 5.2470 1.3017 6.9548 25 1 -0.3633 0.4452 -0.9262 26 1 -0.3632 -1.0247 0.0774 27 1 -0.3633 0.5794 0.8487 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6427 1.5061 -2.0632 31 1 0.4658 2.3528 -1.0307 32 1 0.7353 4.6293 -0.5525 33 1 2.0098 6.7196 -0.8139 34 1 4.2913 6.6632 -1.7389 35 1 5.2986 4.5163 -2.4010 36 1 4.0388 1.8819 -3.3077 37 1 5.2735 2.0776 -2.0406 38 1 3.7438 1.2456 -1.6717 39 1 1.5819 3.1437 1.0625 40 1 0.6962 1.6968 1.6015 41 1 3.1594 -0.2451 1.8211 42 1 3.3612 0.1626 3.5419 43 1 1.7289 -0.0174 2.8554 44 1 4.0856 3.2805 1.5069 45 1 4.8620 2.0322 2.5110 46 1 4.3197 1.6380 0.8623 47 1 2.4053 3.6868 3.3110 48 1 1.4424 2.3336 3.9514 49 1 2.3635 4.2669 6.9474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153748011.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:24 Heat of formation + Delta-G solvation = 13.900523 kcal Electronic energy + Delta-G solvation = -24616.424966 eV Core-core repulsion = 21542.849445 eV Total energy + Delta-G solvation = -3073.575521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77093 -38.11988 -35.28932 -32.76127 -32.17217 -31.77786 -29.34464 -27.26985 -26.72241 -26.24925 -26.14731 -24.74934 -22.81042 -21.90804 -21.08911 -19.76791 -17.75624 -16.29926 -16.13315 -15.68817 -15.37807 -15.27633 -14.55613 -14.23804 -13.85389 -13.64132 -13.29247 -13.03845 -12.97783 -12.66283 -12.58818 -12.40998 -12.08674 -11.93757 -11.91973 -11.70180 -11.52324 -11.42573 -11.01288 -10.80869 -10.78737 -10.70402 -10.60585 -10.50279 -10.21146 -10.13049 -9.87217 -9.51977 -8.90376 -8.78537 -8.58428 -8.35220 -8.26015 -7.83701 -5.90919 -3.90194 1.55379 1.60920 3.36532 3.42824 3.45714 3.87516 4.41660 4.54787 4.94696 5.00158 5.16205 5.19990 5.21448 5.37365 5.38527 5.44903 5.53050 5.56207 5.63012 5.74032 5.79112 5.80022 5.86797 5.91371 5.99005 6.07059 6.08540 6.18271 6.25256 6.25738 6.43163 6.46260 6.49427 6.65096 6.66852 6.71006 6.82486 6.88850 6.92582 6.98638 7.22161 7.33996 7.34665 7.38058 7.48423 7.57986 7.78518 7.95169 8.10364 8.55751 9.15295 9.72011 11.20843 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.005217 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.592648 B = 5365.349163 C = 6294.564632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 N -0.520 5.520 4 C 0.093 3.907 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.126 4.126 8 C -0.119 4.119 9 C -0.126 4.126 10 C -0.058 4.058 11 C -0.118 4.118 12 C 0.058 3.942 13 C -0.048 4.048 14 C -0.132 4.132 15 C -0.109 4.109 16 C 0.034 3.966 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 -2.946 -18.006 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.096 4.096 3 N -0.243 5.243 4 C -0.035 4.035 5 C -0.073 4.073 6 C -0.127 4.127 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.058 4.058 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.048 4.048 14 C -0.189 4.189 15 C -0.166 4.166 16 C -0.003 4.003 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.744 -2.869 -17.898 18.142 hybrid contribution -0.309 0.184 1.003 1.065 sum -1.053 -2.685 -16.895 17.140 Atomic orbital electron populations 1.22451 0.98908 1.01960 1.01799 1.22617 0.92540 0.90868 1.03532 1.62248 1.58643 1.01448 1.01925 1.20998 0.95412 0.92485 0.94566 1.19604 0.94578 0.94210 0.98889 1.21031 0.99939 0.92334 0.99418 1.21035 0.95067 0.98032 1.00314 1.21051 0.95502 0.97709 0.99492 1.20981 0.99645 0.92316 1.01471 1.19658 0.93414 0.95147 0.97597 1.20867 1.00643 0.95390 1.00587 1.22448 0.97466 0.98005 0.88971 1.20499 0.94074 0.95557 0.94694 1.21978 1.00195 0.96138 1.00565 1.21529 0.96653 0.99448 0.99015 1.19108 0.96482 0.94388 0.90346 1.21247 1.09351 1.25386 0.98126 0.92319 1.25009 0.95639 0.95517 0.98456 1.69970 1.31232 1.29606 1.23050 0.86693 0.82094 0.78563 0.81238 1.20838 1.21447 1.19953 0.93146 0.92577 0.92026 0.91630 0.88478 0.90611 0.94418 0.86605 0.86488 0.86605 0.86588 0.92337 0.92030 0.89453 0.91595 0.94460 0.93873 0.91827 0.94613 0.94683 0.93294 0.93675 0.96935 0.97169 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.24 37.16 0.34 -1.88 16 2 C 0.03 0.40 5.64 -3.82 -0.02 0.38 16 3 N -0.52 -7.33 2.59 -236.07 -0.61 -7.94 16 4 C 0.09 1.18 3.27 -4.98 -0.02 1.16 16 5 C -0.07 -1.00 4.78 -104.62 -0.50 -1.50 16 6 C -0.11 -1.52 8.43 -39.58 -0.33 -1.85 16 7 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 8 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 9 C -0.13 -1.63 9.72 -39.58 -0.38 -2.01 16 10 C -0.06 -0.77 5.88 -104.62 -0.62 -1.38 16 11 C -0.12 -1.35 9.41 36.01 0.34 -1.02 16 12 C 0.06 1.01 3.84 -3.82 -0.01 0.99 16 13 C -0.05 -0.96 0.61 -154.51 -0.09 -1.06 16 14 C -0.13 -2.49 6.85 37.16 0.25 -2.24 16 15 C -0.11 -2.19 7.98 37.16 0.30 -1.90 16 16 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 17 C -0.50 -13.97 7.50 -34.44 -0.26 -14.22 16 18 H 0.06 1.60 5.75 -52.48 -0.30 1.29 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 21 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.05 0.54 6.95 -51.93 -0.36 0.18 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 28 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.10 1.32 4.19 -51.93 -0.22 1.10 16 30 H 0.08 0.85 7.31 -51.93 -0.38 0.47 16 31 H 0.04 0.47 6.98 -51.93 -0.36 0.11 16 32 H 0.12 1.52 8.01 -52.49 -0.42 1.10 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 38 H 0.09 1.06 5.99 -51.93 -0.31 0.75 16 39 H 0.07 1.22 6.00 -51.93 -0.31 0.91 16 40 H 0.04 0.66 5.69 -51.93 -0.30 0.36 16 41 H 0.04 0.71 6.16 -51.93 -0.32 0.39 16 42 H 0.06 1.34 6.33 -51.93 -0.33 1.01 16 43 H 0.03 0.65 7.79 -51.93 -0.40 0.24 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 1.05 6.62 -51.93 -0.34 0.71 16 46 H 0.04 0.82 7.47 -51.93 -0.39 0.43 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -29.81 366.19 -9.81 -39.61 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.42 Total: 0.71 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.01 Total: -28.31 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.12 Total: -34.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.81 -9.81 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748011.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.514 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds