Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47106 * 2 1 4 4 C 1.46897 * 110.99753 * 301.40898 * 3 2 1 5 5 C 1.50699 * 109.47018 * 194.13312 * 4 3 2 6 6 C 1.38256 * 120.00425 * 256.30547 * 5 4 3 7 7 C 1.38215 * 119.99969 * 180.02562 * 6 5 4 8 8 C 1.38260 * 119.99728 * 359.97438 * 7 6 5 9 9 C 1.38205 * 120.00461 * 359.97438 * 8 7 6 10 10 C 1.38218 * 119.99417 * 76.03407 * 5 4 3 11 11 C 1.50701 * 120.00197 * 359.97438 * 10 5 4 12 12 C 1.46906 * 110.99914 * 65.36393 * 3 2 1 13 13 C 1.52997 * 109.47251 * 86.91022 * 12 3 2 14 14 C 1.53001 * 109.46899 * 294.90137 * 13 12 3 15 15 C 1.53002 * 109.46835 * 54.90136 * 13 12 3 16 16 C 1.52995 * 109.47093 * 174.90180 * 13 12 3 17 17 C 1.50701 * 109.47087 * 180.02562 * 16 13 12 18 18 H 1.08003 * 120.00183 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00107 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99724 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00145 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47515 * 89.99436 * 21 19 17 23 23 H 1.48507 * 109.47103 * 209.99939 * 21 19 17 24 24 H 1.48508 * 109.46696 * 329.99300 * 21 19 17 25 25 H 1.08997 * 109.46749 * 64.32592 * 1 2 3 26 26 H 1.08996 * 109.46612 * 184.31809 * 1 2 3 27 27 H 1.08992 * 109.47060 * 304.32364 * 1 2 3 28 28 H 1.09001 * 109.47564 * 240.00102 * 2 1 3 29 29 H 1.08996 * 109.47221 * 119.99402 * 2 1 3 30 30 H 1.08995 * 109.47655 * 314.13805 * 4 3 2 31 31 H 1.09001 * 109.46999 * 74.14161 * 4 3 2 32 32 H 1.07996 * 119.99872 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.00042 * 179.97438 * 7 6 5 34 34 H 1.08008 * 119.99378 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.99972 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.47132 * 94.22242 * 11 10 5 37 37 H 1.09003 * 109.46529 * 214.22208 * 11 10 5 38 38 H 1.08994 * 109.46861 * 334.21534 * 11 10 5 39 39 H 1.08999 * 109.46572 * 206.91270 * 12 3 2 40 40 H 1.09001 * 109.46758 * 326.90836 * 12 3 2 41 41 H 1.08998 * 109.47361 * 71.23096 * 14 13 12 42 42 H 1.09007 * 109.46920 * 191.22590 * 14 13 12 43 43 H 1.08992 * 109.47356 * 311.22355 * 14 13 12 44 44 H 1.09000 * 109.47503 * 59.99873 * 15 13 12 45 45 H 1.09003 * 109.46821 * 180.02562 * 15 13 12 46 46 H 1.09001 * 109.47236 * 299.99955 * 15 13 12 47 47 H 1.09005 * 109.47265 * 299.99895 * 16 13 12 48 48 H 1.09002 * 109.47038 * 59.99890 * 16 13 12 49 49 H 0.97000 * 120.00018 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5213 2.1196 -1.1705 5 6 2.3014 3.3990 -1.3301 6 6 1.7361 4.6045 -0.9576 7 6 2.4515 5.7779 -1.1046 8 6 3.7325 5.7461 -1.6237 9 6 4.2980 4.5410 -1.9951 10 6 3.5842 3.3666 -1.8438 11 6 4.2028 2.0519 -2.2437 12 6 1.6562 2.0720 1.2467 13 6 2.7292 1.8095 2.3052 14 6 2.7458 0.3203 2.6561 15 6 4.0975 2.2197 1.7570 16 6 2.4172 2.6259 3.5610 17 6 3.4745 2.3678 4.6034 18 1 4.2879 1.6896 4.3913 19 6 3.4035 2.9974 5.8280 20 7 2.4133 3.8236 6.0861 21 14 4.7144 2.6781 7.1198 22 1 5.8179 3.6585 6.9583 23 1 4.1203 2.8199 8.4735 24 1 5.2470 1.3017 6.9548 25 1 -0.3633 0.4452 -0.9262 26 1 -0.3632 -1.0247 0.0774 27 1 -0.3633 0.5794 0.8487 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6427 1.5061 -2.0632 31 1 0.4658 2.3528 -1.0307 32 1 0.7353 4.6293 -0.5525 33 1 2.0098 6.7196 -0.8139 34 1 4.2913 6.6632 -1.7389 35 1 5.2986 4.5163 -2.4010 36 1 4.0388 1.8819 -3.3077 37 1 5.2735 2.0776 -2.0406 38 1 3.7438 1.2456 -1.6717 39 1 1.5819 3.1437 1.0625 40 1 0.6962 1.6968 1.6015 41 1 3.1594 -0.2451 1.8211 42 1 3.3612 0.1626 3.5419 43 1 1.7289 -0.0174 2.8554 44 1 4.0856 3.2805 1.5069 45 1 4.8620 2.0322 2.5110 46 1 4.3197 1.6380 0.8623 47 1 2.4053 3.6868 3.3110 48 1 1.4424 2.3336 3.9514 49 1 2.3635 4.2669 6.9474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153748011.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = 0.320813 kcal Electronic energy + Delta-G solvation = -24617.013827 eV Core-core repulsion = 21542.849445 eV Total energy + Delta-G solvation = -3074.164382 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86352 -39.36761 -36.84374 -34.34439 -33.66780 -32.77360 -30.46261 -29.11557 -27.87468 -27.82357 -27.46439 -25.97731 -24.67492 -22.93815 -22.13554 -20.92677 -19.37246 -18.29063 -17.33946 -16.84066 -16.63926 -16.44132 -16.19213 -15.47937 -15.20265 -14.79810 -14.67173 -14.37660 -14.20296 -13.97401 -13.87482 -13.80958 -13.48292 -13.24361 -13.06424 -12.85781 -12.72114 -12.69027 -12.67263 -12.45770 -12.27351 -12.23444 -12.11217 -11.87586 -11.72295 -11.57236 -11.31677 -11.24775 -10.79647 -10.61413 -10.49405 -9.62063 -9.35890 -9.01059 -8.12982 -6.19646 0.53874 0.59362 1.39854 1.40676 1.51216 2.43838 2.83780 3.20598 3.31207 3.94048 4.01593 4.14200 4.20054 4.26266 4.27504 4.34173 4.39625 4.44622 4.51044 4.59817 4.68654 4.72585 4.77668 4.85181 4.86334 4.95453 4.98613 5.05236 5.07781 5.10605 5.13694 5.15628 5.26635 5.28057 5.33406 5.42434 5.52612 5.56491 5.58580 5.65964 5.66495 5.70199 5.74011 5.88050 5.93345 5.96779 6.21807 6.24384 6.37856 6.41405 6.95481 7.47249 8.99413 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.005217 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.592648 B = 5365.349163 C = 6294.564632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.031 3.969 3 N -0.518 5.518 4 C 0.098 3.902 5 C -0.086 4.086 6 C -0.128 4.128 7 C -0.143 4.143 8 C -0.128 4.128 9 C -0.136 4.136 10 C -0.068 4.068 11 C -0.114 4.114 12 C 0.072 3.928 13 C -0.043 4.043 14 C -0.122 4.122 15 C -0.093 4.093 16 C 0.043 3.957 17 C -0.511 4.511 18 H 0.065 0.935 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.954 3.046 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.261 1.261 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.015 0.985 45 H 0.030 0.970 46 H 0.070 0.930 47 H -0.024 1.024 48 H -0.019 1.019 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -4.708 -19.601 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.096 4.096 3 N -0.241 5.241 4 C -0.029 4.029 5 C -0.086 4.086 6 C -0.146 4.146 7 C -0.161 4.161 8 C -0.146 4.146 9 C -0.154 4.154 10 C -0.068 4.068 11 C -0.171 4.171 12 C -0.056 4.056 13 C -0.044 4.044 14 C -0.179 4.179 15 C -0.150 4.150 16 C 0.005 3.995 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.780 3.220 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.185 1.185 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.049 0.951 46 H 0.089 0.911 47 H -0.006 1.006 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.544 -4.648 -19.511 20.064 hybrid contribution -0.742 0.772 1.450 1.803 sum -0.198 -3.876 -18.060 18.472 Atomic orbital electron populations 1.22388 0.98263 1.02607 1.01343 1.22680 0.93115 0.89547 1.04303 1.62148 1.58967 1.02195 1.00754 1.21014 0.95144 0.92294 0.94466 1.19784 0.95181 0.94423 0.99240 1.21205 1.00245 0.93111 1.00064 1.21282 0.95698 0.98410 1.00744 1.21356 0.95384 0.98794 0.99031 1.21305 1.00553 0.92227 1.01275 1.19976 0.93286 0.96292 0.97264 1.20868 1.00575 0.93920 1.01708 1.22094 0.96051 0.97468 0.89972 1.20353 0.95218 0.95660 0.93157 1.21881 1.00175 0.95140 1.00682 1.21373 0.95748 0.98588 0.99335 1.18974 0.94659 0.93075 0.92748 1.21612 1.09655 1.24961 0.98638 0.91705 1.25920 0.97900 0.95349 1.00981 1.70117 1.33328 1.30858 1.23715 0.85600 0.79189 0.79023 0.78198 1.20251 1.21157 1.18544 0.92119 0.91087 0.94236 0.88949 0.89467 0.88289 0.94476 0.86851 0.85585 0.84721 0.84654 0.90386 0.91645 0.89919 0.93277 0.94948 0.90750 0.94185 0.94309 0.96566 0.95079 0.91113 1.00566 1.00102 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 9.24 71.98 0.67 -3.25 16 2 C 0.03 0.67 5.64 86.30 0.49 1.16 16 3 N -0.52 -13.66 2.59 -900.78 -2.33 -15.99 16 4 C 0.10 2.30 3.27 85.56 0.28 2.58 16 5 C -0.09 -2.28 4.78 -19.87 -0.09 -2.38 16 6 C -0.13 -3.62 8.43 22.27 0.19 -3.43 16 7 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 8 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 9 C -0.14 -3.29 9.72 22.27 0.22 -3.08 16 10 C -0.07 -1.68 5.88 -19.86 -0.12 -1.80 16 11 C -0.11 -2.27 9.41 71.24 0.67 -1.60 16 12 C 0.07 2.51 3.84 86.30 0.33 2.84 16 13 C -0.04 -1.77 0.61 -52.18 -0.03 -1.80 16 14 C -0.12 -4.50 6.85 71.98 0.49 -4.00 16 15 C -0.09 -3.71 7.98 71.98 0.57 -3.13 16 16 C 0.04 2.30 4.04 29.85 0.12 2.42 16 17 C -0.51 -28.98 7.50 25.60 0.19 -28.78 16 18 H 0.06 3.54 5.75 -2.91 -0.02 3.52 16 19 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 20 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 21 Si 0.95 45.34 29.54 68.60 2.03 47.36 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 25 H 0.06 1.14 6.95 -2.39 -0.02 1.12 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.00 6.08 -2.39 -0.01 0.99 16 28 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 29 H 0.09 2.11 4.19 -2.39 -0.01 2.10 16 30 H 0.10 1.89 7.31 -2.39 -0.02 1.87 16 31 H 0.04 0.89 6.98 -2.39 -0.02 0.87 16 32 H 0.11 3.12 8.01 -2.91 -0.02 3.10 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 38 H 0.08 1.72 5.99 -2.39 -0.01 1.70 16 39 H 0.05 1.88 6.00 -2.39 -0.01 1.86 16 40 H 0.03 1.16 5.69 -2.39 -0.01 1.15 16 41 H 0.07 2.28 6.16 -2.39 -0.01 2.26 16 42 H 0.04 1.65 6.33 -2.38 -0.02 1.64 16 43 H 0.04 1.38 7.79 -2.39 -0.02 1.36 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.03 1.32 6.62 -2.39 -0.02 1.30 16 46 H 0.07 2.43 7.47 -2.39 -0.02 2.41 16 47 H -0.02 -1.45 8.14 -2.38 -0.02 -1.47 16 48 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 49 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -65.84 366.19 5.76 -60.07 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.90 Total: 17.55 kcal Atomic # 6 Polarization: -55.56 SS G_CDS: 4.88 Total: -50.68 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.05 Total: -74.31 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -65.84 5.76 -60.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153748011.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.394 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds