Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 N 1.46905 * 109.47167 * 184.39414 * 3 2 1 5 5 C 1.46899 * 111.00167 * 304.16686 * 4 3 2 6 6 C 1.50703 * 109.47069 * 288.20324 * 5 4 3 7 7 C 1.38229 * 120.00185 * 95.99726 * 6 5 4 8 8 C 1.38233 * 119.99947 * 180.02562 * 7 6 5 9 9 C 1.38232 * 120.00059 * 359.95240 * 8 7 6 10 10 C 1.38233 * 120.00381 * 0.27714 * 9 8 7 11 11 C 1.38233 * 119.99704 * 275.97209 * 6 5 4 12 12 C 1.46902 * 110.99848 * 68.12164 * 4 3 2 13 13 C 1.52997 * 109.47144 * 85.43712 * 12 4 3 14 14 C 1.53001 * 109.46952 * 294.84564 * 13 12 4 15 15 C 1.52999 * 109.47155 * 54.84665 * 13 12 4 16 16 C 1.52996 * 109.47073 * 174.84893 * 13 12 4 17 17 C 1.50699 * 109.47246 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00191 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00103 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99839 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47073 * 90.00086 * 21 19 17 23 23 H 1.48509 * 109.46992 * 209.99761 * 21 19 17 24 24 H 1.48501 * 109.47151 * 329.99665 * 21 19 17 25 25 H 1.08997 * 109.46978 * 59.99997 * 1 2 3 26 26 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46946 * 299.99671 * 1 2 3 28 28 H 1.09003 * 109.47607 * 239.99971 * 2 1 3 29 29 H 1.09008 * 109.47418 * 119.99954 * 2 1 3 30 30 H 1.09002 * 109.47176 * 64.39569 * 3 2 1 31 31 H 1.08996 * 109.47578 * 304.39386 * 3 2 1 32 32 H 1.09001 * 109.47374 * 168.19906 * 5 4 3 33 33 H 1.09000 * 109.46963 * 48.19560 * 5 4 3 34 34 H 1.08003 * 120.00237 * 359.97326 * 7 6 5 35 35 H 1.08004 * 120.00406 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.99821 * 180.02562 * 9 8 7 37 37 H 1.07992 * 120.00753 * 179.72630 * 10 9 8 38 38 H 1.07998 * 120.00085 * 0.02562 * 11 6 5 39 39 H 1.09004 * 109.46594 * 205.43454 * 12 4 3 40 40 H 1.08995 * 109.47179 * 325.43362 * 12 4 3 41 41 H 1.09000 * 109.47099 * 74.31716 * 14 13 12 42 42 H 1.09003 * 109.47134 * 194.31155 * 14 13 12 43 43 H 1.08999 * 109.47165 * 314.31666 * 14 13 12 44 44 H 1.08996 * 109.46837 * 60.00447 * 15 13 12 45 45 H 1.09000 * 109.46967 * 180.02562 * 15 13 12 46 46 H 1.08996 * 109.47113 * 299.99546 * 15 13 12 47 47 H 1.08996 * 109.47468 * 299.99889 * 16 13 12 48 48 H 1.09002 * 109.47125 * 59.99571 * 16 13 12 49 49 H 0.97008 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5052 1.4438 -0.1061 5 6 4.1115 0.6454 0.9676 6 6 3.9708 1.3764 2.2779 7 6 2.9207 1.0787 3.1261 8 6 2.7914 1.7496 4.3278 9 6 3.7127 2.7175 4.6817 10 6 4.7602 3.0186 3.8313 11 6 4.8922 2.3442 2.6318 12 6 3.9378 0.9659 -1.4261 13 6 3.9409 2.1332 -2.4153 14 6 2.5092 2.6330 -2.6187 15 6 4.8038 3.2688 -1.8614 16 6 4.5127 1.6649 -3.7549 17 6 4.5152 2.8144 -4.7294 18 1 4.1463 3.7823 -4.4237 19 6 4.9895 2.6308 -6.0109 20 7 4.9921 3.6341 -6.8612 21 14 5.6283 0.9569 -6.5394 22 1 4.5121 0.1568 -7.1042 23 1 6.6827 1.1324 -7.5705 24 1 6.1983 0.2508 -5.3639 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.7424 1.9331 0.9268 31 1 1.6138 1.9786 -0.8479 32 1 5.1681 0.4880 0.7509 33 1 3.6065 -0.3183 1.0332 34 1 2.2009 0.3226 2.8496 35 1 1.9707 1.5174 4.9904 36 1 3.6119 3.2414 5.6208 37 1 5.4774 3.7778 4.1057 38 1 5.7126 2.5768 1.9691 39 1 4.9429 0.5509 -1.3507 40 1 3.2516 0.1948 -1.7762 41 1 2.1920 3.1941 -1.7397 42 1 2.4712 3.2794 -3.4956 43 1 1.8446 1.7817 -2.7657 44 1 5.8237 2.9126 -1.7165 45 1 4.8056 4.1005 -2.5659 46 1 4.3963 3.6024 -0.9071 47 1 5.5326 1.3088 -3.6100 48 1 3.8980 0.8558 -4.1494 49 1 5.3255 3.5048 -7.7629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160482646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = 2.140863 kcal Electronic energy + Delta-G solvation = -24012.072692 eV Core-core repulsion = 20937.987234 eV Total energy + Delta-G solvation = -3074.085458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73413 -39.42751 -37.06036 -34.40687 -33.86665 -32.03471 -31.66167 -29.64687 -28.43634 -27.55671 -27.03834 -25.00464 -23.68556 -23.30098 -22.56018 -20.84983 -19.42691 -18.81594 -17.54322 -16.81436 -16.73973 -16.25237 -15.99095 -15.80317 -15.43947 -15.04265 -14.96662 -14.56660 -14.21442 -14.15252 -14.05564 -13.81854 -13.59226 -13.33479 -12.99986 -12.81896 -12.74116 -12.70245 -12.43952 -12.32668 -12.18871 -12.07962 -11.92048 -11.84510 -11.76421 -11.67515 -11.31974 -11.21371 -10.84738 -10.72317 -10.67308 -9.71499 -9.58467 -8.96290 -8.20074 -6.19888 0.52743 0.60562 1.36112 1.38088 1.49136 2.40674 2.84831 3.15003 3.32519 3.91140 3.99794 4.04466 4.12736 4.19955 4.23162 4.26908 4.34520 4.40428 4.49047 4.50276 4.59342 4.69418 4.72593 4.78434 4.84495 4.89787 4.94287 4.97555 5.04880 5.07315 5.13412 5.19468 5.22968 5.25393 5.26028 5.31309 5.39635 5.47587 5.50140 5.58936 5.66050 5.67136 5.71514 5.79182 5.83489 5.87382 6.19270 6.26694 6.32427 6.45825 6.87398 7.42197 8.96324 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.003976 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.051429 B = 7040.399364 C = 7692.486759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.159 4.159 3 C 0.038 3.962 4 N -0.527 5.527 5 C 0.087 3.913 6 C -0.078 4.078 7 C -0.121 4.121 8 C -0.129 4.129 9 C -0.130 4.130 10 C -0.132 4.132 11 C -0.115 4.115 12 C 0.070 3.930 13 C -0.040 4.040 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.002 4.002 17 C -0.501 4.501 18 H 0.043 0.957 19 C 0.000 4.000 20 N -0.956 5.956 21 Si 0.941 3.059 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.249 1.249 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -8.416 23.832 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C -0.089 4.089 4 N -0.248 5.248 5 C -0.040 4.040 6 C -0.079 4.079 7 C -0.140 4.140 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.133 4.133 12 C -0.058 4.058 13 C -0.041 4.041 14 C -0.180 4.180 15 C -0.161 4.161 16 C -0.040 4.040 17 C -0.539 4.539 18 H 0.061 0.939 19 C -0.195 4.195 20 N -0.598 5.598 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.172 1.172 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.031 0.969 48 H 0.029 0.971 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.419 -7.893 23.714 25.574 hybrid contribution 0.220 -0.999 -1.188 1.567 sum -5.198 -8.892 22.526 24.769 Atomic orbital electron populations 1.21645 0.94646 1.01925 1.01962 1.22142 0.97344 0.98514 1.01739 1.22647 0.86959 0.96160 1.03171 1.62068 1.08084 1.53253 1.01438 1.21175 0.99951 0.94338 0.88511 1.19806 0.95511 0.97276 0.95266 1.21222 0.97566 1.00532 0.94630 1.21389 0.99733 0.96631 0.96883 1.21419 0.94881 0.98209 1.00314 1.21390 0.99029 1.00050 0.94485 1.21171 0.99442 0.95945 0.96766 1.22184 0.99747 0.95316 0.88539 1.20268 0.95434 0.95200 0.93197 1.21887 0.95685 1.00139 1.00288 1.21461 0.98121 0.97274 0.99271 1.19584 0.95494 0.95248 0.93651 1.21426 1.39312 0.97246 0.95919 0.93922 1.25920 0.96315 1.00277 0.96994 1.70071 1.49833 1.33568 1.06318 0.85802 0.78503 0.80635 0.78535 1.19601 1.21542 1.17227 0.93263 0.92234 0.91978 0.92810 0.91145 0.90946 0.89806 0.90557 0.92595 0.85513 0.84332 0.84378 0.84993 0.86514 0.91686 0.93806 0.91911 0.94885 0.93366 0.94531 0.95806 0.91764 0.96928 0.97128 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.16 -3.15 5.20 30.59 0.16 -2.99 16 3 C 0.04 0.89 4.66 86.30 0.40 1.30 16 4 N -0.53 -13.56 3.52 -900.78 -3.17 -16.73 16 5 C 0.09 1.93 4.86 85.56 0.42 2.34 16 6 C -0.08 -1.68 4.89 -19.87 -0.10 -1.78 16 7 C -0.12 -2.27 8.66 22.27 0.19 -2.07 16 8 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 9 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 10 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 11 C -0.11 -2.54 9.73 22.27 0.22 -2.32 16 12 C 0.07 2.11 4.06 86.30 0.35 2.46 16 13 C -0.04 -1.53 0.61 -52.18 -0.03 -1.56 16 14 C -0.12 -4.58 6.86 71.98 0.49 -4.09 16 15 C -0.10 -4.03 7.96 71.98 0.57 -3.46 16 16 C 0.00 -0.09 3.11 29.85 0.09 0.00 16 17 C -0.50 -28.42 8.00 25.60 0.20 -28.22 16 18 H 0.04 2.67 6.03 -2.91 -0.02 2.65 16 19 C 0.00 0.02 5.47 84.66 0.46 0.49 16 20 N -0.96 -60.66 13.96 21.45 0.30 -60.36 16 21 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.21 6.22 -2.39 -0.01 1.19 16 29 H 0.07 1.25 5.42 -2.38 -0.01 1.24 16 30 H 0.07 1.66 6.89 -2.39 -0.02 1.65 16 31 H 0.08 2.20 3.97 -2.39 -0.01 2.20 16 32 H 0.08 1.72 7.60 -2.39 -0.02 1.70 16 33 H 0.06 1.12 5.61 -2.39 -0.01 1.10 16 34 H 0.13 2.03 7.13 -2.91 -0.02 2.01 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.06 1.94 7.47 -2.39 -0.02 1.92 16 40 H 0.04 1.29 5.84 -2.39 -0.01 1.28 16 41 H 0.06 2.09 6.32 -2.39 -0.02 2.08 16 42 H 0.03 1.46 6.28 -2.39 -0.01 1.44 16 43 H 0.05 1.64 7.55 -2.39 -0.02 1.62 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.02 1.05 6.62 -2.39 -0.02 1.03 16 46 H 0.06 2.26 7.47 -2.39 -0.02 2.24 16 47 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 48 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 49 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -64.76 364.13 4.68 -60.08 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.85 Total: 18.06 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 4.82 Total: -47.90 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.87 Total: -77.10 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -64.76 4.68 -60.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160482646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.217 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds