Wall clock time and date at job start Tue Mar 31 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46896 * 109.47181 * 65.00049 * 5 3 2 7 7 C 1.46904 * 111.00016 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47223 * 300.00243 * 8 7 6 10 10 C 1.53002 * 109.46762 * 60.00300 * 8 7 6 11 11 C 1.53002 * 109.46782 * 180.02562 * 8 7 6 12 12 C 1.50702 * 109.46470 * 180.02562 * 11 8 7 13 13 H 1.07997 * 120.00174 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99702 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99843 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99962 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46866 * 119.99868 * 16 14 12 19 19 H 1.48491 * 109.47402 * 239.99490 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 3 2 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 3 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 3 2 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 32 32 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 33 33 H 1.00903 * 111.00011 * 303.95191 * 6 5 3 34 34 H 1.08998 * 109.47006 * 300.00352 * 7 6 5 35 35 H 1.09003 * 109.46947 * 60.00060 * 7 6 5 36 36 H 1.09008 * 109.46914 * 59.99776 * 9 8 7 37 37 H 1.08990 * 109.47272 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.46789 * 300.00081 * 9 8 7 39 39 H 1.08998 * 109.47080 * 59.99614 * 10 8 7 40 40 H 1.08998 * 109.46640 * 180.02562 * 10 8 7 41 41 H 1.09007 * 109.47127 * 299.99547 * 10 8 7 42 42 H 1.08992 * 109.47119 * 299.99751 * 11 8 7 43 43 H 1.08993 * 109.47242 * 60.00513 * 11 8 7 44 44 H 0.97006 * 119.99650 * 180.02562 * 15 14 12 45 45 H 1.08010 * 119.99941 * 359.97438 * 21 20 3 46 46 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 47 47 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 48 48 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00084 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9490 0.8962 -1.4334 7 6 5.4096 0.8828 -1.5901 8 6 5.7702 0.3062 -2.9607 9 6 5.2325 -1.1219 -3.0707 10 6 5.1474 1.1717 -4.0580 11 6 7.2915 0.2918 -3.1236 12 6 7.6466 -0.2756 -4.4738 13 1 6.8655 -0.5944 -5.1480 14 6 8.9689 -0.3886 -4.8479 15 7 9.9200 -0.0009 -4.0267 16 14 9.4091 -1.0926 -6.5212 17 1 8.1659 -1.4507 -7.2504 18 1 10.1654 -0.0798 -7.3009 19 1 10.2461 -2.3062 -6.3431 20 6 1.6414 2.1163 1.2877 21 6 2.0721 1.6049 2.4976 22 6 1.7096 2.2252 3.6785 23 6 0.9098 3.3522 3.6500 24 6 0.4746 3.8605 2.4404 25 6 0.8403 3.2424 1.2593 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6659 33 1 3.5623 -0.0263 -1.5666 34 1 5.7928 1.9002 -1.5113 35 1 5.8533 0.2659 -0.8086 36 1 4.1487 -1.1120 -2.9544 37 1 5.4890 -1.5325 -4.0472 38 1 5.6762 -1.7384 -2.2889 39 1 5.5305 2.1891 -3.9795 40 1 5.4040 0.7606 -5.0343 41 1 4.0636 1.1815 -3.9417 42 1 7.6749 1.3090 -3.0451 43 1 7.7348 -0.3250 -2.3419 44 1 10.8503 -0.0801 -4.2901 45 1 2.6941 0.7221 2.5200 46 1 2.0493 1.8277 4.6236 47 1 0.6243 3.8353 4.5728 48 1 -0.1506 4.7408 2.4181 49 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174244434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:43 Heat of formation + Delta-G solvation = -10.659936 kcal Electronic energy + Delta-G solvation = -23022.334672 eV Core-core repulsion = 19947.694130 eV Total energy + Delta-G solvation = -3074.640543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83576 -37.78976 -36.14344 -33.41444 -32.00224 -31.08038 -30.89175 -28.15113 -26.81861 -26.30509 -25.00339 -23.29457 -23.11166 -22.54103 -21.82543 -19.83488 -17.86957 -17.06167 -16.23603 -15.80981 -15.47491 -15.00863 -14.74048 -14.57850 -14.28014 -13.94879 -13.60208 -13.49979 -13.21947 -12.92286 -12.69879 -12.54199 -12.32808 -12.14796 -11.97887 -11.69871 -11.55640 -11.29462 -10.99683 -10.93176 -10.86678 -10.74024 -10.68605 -10.62220 -10.46618 -10.21489 -10.07006 -9.65833 -9.07435 -9.01977 -8.85275 -8.74223 -8.30356 -8.04629 -5.94672 -3.94582 1.21170 1.24788 3.33409 3.41257 3.44775 3.62913 4.34425 4.50823 4.60019 4.75980 4.83990 4.89933 4.97323 4.99010 5.15434 5.32619 5.37231 5.41223 5.43172 5.53639 5.62309 5.72343 5.76163 5.81309 5.84280 5.89881 5.96833 6.00013 6.04487 6.11240 6.15999 6.28940 6.33609 6.35673 6.37157 6.53554 6.56356 6.68942 6.81597 6.85464 6.85768 7.23427 7.25655 7.29050 7.43582 7.70702 7.74508 7.88316 8.06001 8.50515 9.11135 9.68166 11.17075 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.002752 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.161135 B =10171.478135 C =10527.256786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.049 4.049 4 H 0.087 0.913 5 C 0.067 3.933 6 N -0.687 5.687 7 C 0.070 3.930 8 C -0.058 4.058 9 C -0.129 4.129 10 C -0.116 4.116 11 C 0.033 3.967 12 C -0.505 4.505 13 H 0.060 0.940 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.337 0.663 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.258 0.742 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 3.800 13.494 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.067 4.067 4 H 0.106 0.894 5 C -0.063 4.063 6 N -0.320 5.320 7 C -0.058 4.058 8 C -0.058 4.058 9 C -0.186 4.186 10 C -0.173 4.173 11 C -0.005 4.005 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.065 4.065 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.792 4.404 13.173 24.180 hybrid contribution 0.759 -1.042 -0.174 1.301 sum -19.033 3.362 12.999 23.293 Atomic orbital electron populations 1.21749 0.95719 1.01350 1.01825 1.21614 0.96172 0.95628 1.02131 1.20274 0.95862 0.96019 0.94588 0.89417 1.21946 0.93424 1.00333 0.90553 1.60595 1.12056 1.29581 1.29720 1.22102 0.85731 1.00378 0.97637 1.20623 0.99078 0.93960 0.92181 1.21770 0.97538 0.96910 1.02393 1.21595 0.98459 0.98620 0.98620 1.19130 0.87475 0.97004 0.96844 1.21280 0.91525 1.40416 1.01122 0.92236 1.25024 0.96794 0.95919 0.96938 1.69982 0.99684 1.48312 1.35803 0.86612 0.78431 0.78730 0.84684 1.19772 1.21166 1.21211 1.19857 0.96628 0.95224 0.94788 1.21034 1.00129 1.00116 0.92043 1.21130 0.98388 0.96157 0.98079 1.21110 0.98863 0.96928 0.97842 1.21127 1.00197 0.99866 0.92619 1.21100 0.98357 0.95676 0.98258 0.92663 0.92986 0.92817 0.91209 0.92138 0.91163 0.95576 0.84236 0.91630 0.95969 0.94879 0.91709 0.94141 0.94202 0.92734 0.93893 0.96688 0.96944 0.93245 0.86245 0.86321 0.86439 0.86305 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.73 37.16 0.36 -0.96 16 2 C -0.12 -1.14 5.17 -26.73 -0.14 -1.28 16 3 C -0.05 -0.51 2.25 -91.77 -0.21 -0.72 16 4 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 5 C 0.07 0.83 4.89 -3.83 -0.02 0.82 16 6 N -0.69 -9.89 5.71 -113.78 -0.65 -10.54 16 7 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 8 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 9 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 10 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 11 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 12 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 13 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.06 -0.66 3.76 -104.63 -0.39 -1.05 16 21 C -0.12 -1.15 8.71 -39.58 -0.34 -1.49 16 22 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 23 C -0.13 -1.12 10.05 -39.59 -0.40 -1.52 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.12 -1.12 9.67 -39.59 -0.38 -1.50 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 29 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 30 H 0.06 0.58 7.21 -51.93 -0.37 0.20 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.03 0.33 7.59 -51.93 -0.39 -0.07 16 33 H 0.34 4.63 4.93 -39.29 -0.19 4.43 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.52 6.57 -51.92 -0.34 0.18 16 37 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 41 H 0.04 0.75 7.60 -51.92 -0.39 0.36 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 1.12 7.13 -52.48 -0.37 0.74 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -29.41 377.90 -10.36 -39.77 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.81 Total: 1.43 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.31 Total: -26.74 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.09 Total: -36.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.41 -10.36 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174244434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.109 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds