Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46896 * 109.47181 * 65.00049 * 5 3 2 7 7 C 1.46904 * 111.00016 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47223 * 300.00243 * 8 7 6 10 10 C 1.53002 * 109.46762 * 60.00300 * 8 7 6 11 11 C 1.53002 * 109.46782 * 180.02562 * 8 7 6 12 12 C 1.50702 * 109.46470 * 180.02562 * 11 8 7 13 13 H 1.07997 * 120.00174 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99702 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99843 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99962 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46866 * 119.99868 * 16 14 12 19 19 H 1.48491 * 109.47402 * 239.99490 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 3 2 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 3 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 3 2 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 32 32 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 33 33 H 1.00903 * 111.00011 * 303.95191 * 6 5 3 34 34 H 1.08998 * 109.47006 * 300.00352 * 7 6 5 35 35 H 1.09003 * 109.46947 * 60.00060 * 7 6 5 36 36 H 1.09008 * 109.46914 * 59.99776 * 9 8 7 37 37 H 1.08990 * 109.47272 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.46789 * 300.00081 * 9 8 7 39 39 H 1.08998 * 109.47080 * 59.99614 * 10 8 7 40 40 H 1.08998 * 109.46640 * 180.02562 * 10 8 7 41 41 H 1.09007 * 109.47127 * 299.99547 * 10 8 7 42 42 H 1.08992 * 109.47119 * 299.99751 * 11 8 7 43 43 H 1.08993 * 109.47242 * 60.00513 * 11 8 7 44 44 H 0.97006 * 119.99650 * 180.02562 * 15 14 12 45 45 H 1.08010 * 119.99941 * 359.97438 * 21 20 3 46 46 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 47 47 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 48 48 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00084 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9490 0.8962 -1.4334 7 6 5.4096 0.8828 -1.5901 8 6 5.7702 0.3062 -2.9607 9 6 5.2325 -1.1219 -3.0707 10 6 5.1474 1.1717 -4.0580 11 6 7.2915 0.2918 -3.1236 12 6 7.6466 -0.2756 -4.4738 13 1 6.8655 -0.5944 -5.1480 14 6 8.9689 -0.3886 -4.8479 15 7 9.9200 -0.0009 -4.0267 16 14 9.4091 -1.0926 -6.5212 17 1 8.1659 -1.4507 -7.2504 18 1 10.1654 -0.0798 -7.3009 19 1 10.2461 -2.3062 -6.3431 20 6 1.6414 2.1163 1.2877 21 6 2.0721 1.6049 2.4976 22 6 1.7096 2.2252 3.6785 23 6 0.9098 3.3522 3.6500 24 6 0.4746 3.8605 2.4404 25 6 0.8403 3.2424 1.2593 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6659 33 1 3.5623 -0.0263 -1.5666 34 1 5.7928 1.9002 -1.5113 35 1 5.8533 0.2659 -0.8086 36 1 4.1487 -1.1120 -2.9544 37 1 5.4890 -1.5325 -4.0472 38 1 5.6762 -1.7384 -2.2889 39 1 5.5305 2.1891 -3.9795 40 1 5.4040 0.7606 -5.0343 41 1 4.0636 1.1815 -3.9417 42 1 7.6749 1.3090 -3.0451 43 1 7.7348 -0.3250 -2.3419 44 1 10.8503 -0.0801 -4.2901 45 1 2.6941 0.7221 2.5200 46 1 2.0493 1.8277 4.6236 47 1 0.6243 3.8353 4.5728 48 1 -0.1506 4.7408 2.4181 49 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174244434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = -24.477263 kcal Electronic energy + Delta-G solvation = -23022.933836 eV Core-core repulsion = 19947.694130 eV Total energy + Delta-G solvation = -3075.239707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59686 -39.19161 -37.23105 -34.97546 -33.73749 -31.76329 -31.61347 -29.46493 -28.53207 -27.88365 -26.46798 -24.65810 -23.88784 -23.64121 -22.89148 -20.64786 -19.50543 -18.33350 -17.78221 -16.91715 -16.58357 -16.36887 -15.82196 -15.67447 -15.38340 -15.06771 -14.81945 -14.70853 -14.30079 -14.18905 -13.89288 -13.75512 -13.46963 -13.41100 -13.36481 -12.94617 -12.73892 -12.66150 -12.43544 -12.31343 -12.25405 -12.15163 -11.98145 -11.91718 -11.72105 -11.47961 -11.40511 -11.33902 -10.85592 -10.71172 -10.51019 -9.76898 -9.53436 -9.28166 -8.13836 -6.20765 0.50739 0.55351 1.40311 1.41329 1.53589 2.43949 2.91433 3.20191 3.28020 3.81636 3.90391 4.06115 4.17197 4.20729 4.22767 4.24094 4.32885 4.38897 4.39979 4.55163 4.62121 4.69111 4.73785 4.77064 4.81939 4.85694 4.96023 5.01228 5.08934 5.10035 5.12514 5.20991 5.22503 5.22933 5.26711 5.35042 5.43843 5.52418 5.54690 5.59420 5.63631 5.67320 5.67886 5.81733 5.88083 5.93353 6.09127 6.17932 6.37344 6.56166 6.94705 7.46609 8.98839 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.002752 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.161135 B =10171.478135 C =10527.256786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.038 4.038 4 H 0.084 0.916 5 C 0.070 3.930 6 N -0.680 5.680 7 C 0.082 3.918 8 C -0.055 4.055 9 C -0.122 4.122 10 C -0.107 4.107 11 C 0.039 3.961 12 C -0.512 4.512 13 H 0.067 0.933 14 C -0.006 4.006 15 N -0.939 5.939 16 Si 0.957 3.043 17 H -0.260 1.260 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.075 4.075 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.345 0.655 34 H 0.053 0.947 35 H 0.016 0.984 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.028 0.972 40 H 0.039 0.961 41 H 0.068 0.932 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.259 0.741 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.055 3.508 13.433 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.056 4.056 4 H 0.103 0.897 5 C -0.059 4.059 6 N -0.314 5.314 7 C -0.047 4.047 8 C -0.055 4.055 9 C -0.179 4.179 10 C -0.164 4.164 11 C 0.001 3.999 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.580 5.580 16 Si 0.782 3.218 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.076 4.076 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.166 0.834 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.968 4.108 13.113 25.912 hybrid contribution 1.408 -0.902 -0.070 1.674 sum -20.560 3.207 13.043 24.558 Atomic orbital electron populations 1.21697 0.94944 1.01794 1.01707 1.21599 0.96818 0.94910 1.02040 1.20136 0.93978 0.96691 0.94842 0.89727 1.21942 0.95050 0.99491 0.89401 1.60518 1.09626 1.30073 1.31165 1.21806 0.87835 0.99251 0.95834 1.20487 0.95312 0.95666 0.94024 1.21686 0.99684 0.95285 1.01288 1.21501 0.99904 0.97604 0.97375 1.19018 0.91340 0.94185 0.95324 1.21649 0.91800 1.39668 1.01855 0.91503 1.25938 0.96913 0.96466 1.00933 1.70123 1.00076 1.49850 1.37998 0.85515 0.78484 0.77874 0.79904 1.18366 1.20901 1.20808 1.19855 0.97396 0.95745 0.94596 1.21158 1.00556 1.00491 0.92443 1.21395 0.98356 0.96351 0.98493 1.21430 0.98311 0.96719 0.98749 1.21420 1.00161 1.00375 0.92402 1.21290 0.98502 0.95663 0.99093 0.92481 0.92259 0.93207 0.91396 0.92063 0.92221 0.95440 0.83417 0.92826 0.96599 0.91375 0.93344 0.94477 0.95239 0.94215 0.91282 0.99893 0.99825 0.93193 0.86186 0.84786 0.84377 0.84391 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.73 71.98 0.70 -1.58 16 2 C -0.12 -2.05 5.17 30.59 0.16 -1.89 16 3 C -0.04 -0.74 2.25 -11.54 -0.03 -0.77 16 4 H 0.08 1.72 7.88 -2.39 -0.02 1.71 16 5 C 0.07 1.69 4.89 86.30 0.42 2.11 16 6 N -0.68 -18.67 5.71 -513.88 -2.93 -21.61 16 7 C 0.08 2.86 4.65 86.30 0.40 3.27 16 8 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 9 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 10 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 11 C 0.04 2.04 4.04 29.85 0.12 2.16 16 12 C -0.51 -28.50 7.65 25.60 0.20 -28.30 16 13 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 14 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 15 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 16 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.08 -1.45 3.76 -19.87 -0.07 -1.53 16 21 C -0.13 -2.42 8.71 22.27 0.19 -2.23 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.13 -2.29 9.67 22.27 0.22 -2.07 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.83 7.38 -2.39 -0.02 0.81 16 29 H 0.07 1.22 6.47 -2.39 -0.02 1.21 16 30 H 0.06 1.07 7.21 -2.39 -0.02 1.06 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.03 0.66 7.59 -2.39 -0.02 0.64 16 33 H 0.34 8.67 4.93 -89.69 -0.44 8.23 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 1.96 6.57 -2.38 -0.02 1.94 16 37 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 41 H 0.07 2.27 7.60 -2.38 -0.02 2.25 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 45 H 0.12 2.16 7.13 -2.91 -0.02 2.14 16 46 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 47 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 49 H 0.13 2.01 7.95 -2.91 -0.02 1.99 16 Total: -1.00 -63.77 377.90 4.38 -59.39 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.45 Total: 18.89 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 4.56 Total: -45.77 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.65 Total: -79.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.77 4.38 -59.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174244434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.911 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds