Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00347 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.00062 * 180.02562 * 6 4 3 8 8 N 1.46906 * 109.47109 * 90.00122 * 7 6 4 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47191 * 300.00419 * 10 9 8 12 12 C 1.52999 * 109.46983 * 59.99979 * 10 9 8 13 13 C 1.52998 * 109.47380 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47182 * 180.02562 * 13 10 9 15 15 H 1.08001 * 120.00154 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00214 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99912 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00442 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46917 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46978 * 119.99759 * 18 16 14 21 21 H 1.48496 * 109.47253 * 239.99876 * 18 16 14 22 22 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 23 23 C 1.50700 * 120.00162 * 179.72779 * 22 6 4 24 24 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46656 * 89.99715 * 1 2 3 26 26 H 1.08990 * 109.47102 * 210.00122 * 1 2 3 27 27 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 28 28 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47156 * 269.97712 * 5 4 3 30 30 H 1.09001 * 109.46768 * 29.97009 * 5 4 3 31 31 H 1.08997 * 109.47700 * 149.97230 * 5 4 3 32 32 H 1.08992 * 109.46894 * 329.99857 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.00008 * 7 6 4 34 34 H 1.00902 * 111.00068 * 56.04268 * 8 7 6 35 35 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 36 36 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 37 37 H 1.09003 * 109.47221 * 59.99243 * 11 10 9 38 38 H 1.08997 * 109.47170 * 180.02562 * 11 10 9 39 39 H 1.09005 * 109.46721 * 299.99839 * 11 10 9 40 40 H 1.09001 * 109.47612 * 60.00211 * 12 10 9 41 41 H 1.08997 * 109.47506 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.47572 * 300.00136 * 12 10 9 43 43 H 1.08999 * 109.46979 * 300.00363 * 13 10 9 44 44 H 1.08996 * 109.46919 * 59.99709 * 13 10 9 45 45 H 0.97000 * 120.00251 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.47014 * 89.99702 * 23 22 6 47 47 H 1.08996 * 109.47283 * 209.99818 * 23 22 6 48 48 H 1.09004 * 109.46914 * 330.00169 * 23 22 6 49 49 H 1.07999 * 120.00384 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0001 0.0028 8 7 6.2673 0.0005 1.3882 9 6 7.7357 -0.0002 1.4285 10 6 8.2060 0.0011 2.8845 11 6 7.6769 1.2513 3.5902 12 6 7.6758 -1.2472 3.5927 13 6 9.7354 0.0011 2.9265 14 6 10.1985 0.0017 4.3605 15 1 9.4744 0.0025 5.1618 16 6 11.5466 0.0024 4.6496 17 7 12.4284 0.0019 3.6739 18 14 12.1207 0.0038 6.4272 19 1 10.9405 0.0035 7.3285 20 1 12.9393 -1.2083 6.6840 21 1 12.9386 1.2167 6.6822 22 6 3.5805 -1.1972 -0.0036 23 6 4.3339 -2.5023 -0.0087 24 6 2.1981 -1.1972 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1325 -0.0004 29 1 4.5166 2.8168 -1.0264 30 1 3.7447 3.2618 0.5144 31 1 5.2861 2.3718 0.5157 32 1 6.1424 0.8896 -0.5112 33 1 6.1424 -0.8904 -0.5104 34 1 5.8914 -0.7806 1.9046 35 1 8.1127 -0.8906 0.9254 36 1 8.1135 0.8894 0.9243 37 1 6.5873 1.2518 3.5602 38 1 8.0123 1.2524 4.6273 39 1 8.0546 2.1406 3.0856 40 1 8.0527 -2.1379 3.0900 41 1 8.0104 -1.2461 4.6300 42 1 6.5862 -1.2468 3.5628 43 1 10.1126 -0.8893 2.4236 44 1 10.1127 0.8906 2.4220 45 1 13.3768 0.0020 3.8772 46 1 4.5152 -2.8212 1.0178 47 1 3.7451 -3.2598 -0.5258 48 1 5.2866 -2.3699 -0.5215 49 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174323308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = -12.045881 kcal Electronic energy + Delta-G solvation = -23299.186637 eV Core-core repulsion = 20224.485996 eV Total energy + Delta-G solvation = -3074.700642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01083 -37.57593 -35.10771 -33.61605 -33.00620 -31.89963 -28.30017 -27.92987 -26.82811 -26.76287 -26.29573 -25.15893 -23.55461 -22.03576 -20.79962 -20.00149 -17.89807 -16.48767 -16.22126 -15.88752 -15.05784 -14.71545 -14.46866 -14.30382 -13.90153 -13.76895 -13.32415 -13.19573 -13.17245 -12.95789 -12.70264 -12.67008 -12.62523 -12.42018 -12.01018 -11.94247 -11.76381 -11.55484 -11.24028 -11.02176 -10.92558 -10.78186 -10.73835 -10.72369 -10.47119 -10.23799 -10.08228 -9.65886 -9.01926 -8.81142 -8.56294 -8.45441 -8.30513 -8.00468 -5.94920 -3.94744 1.29414 1.36267 3.33321 3.41205 3.44864 3.61310 4.48705 4.61773 4.67054 4.75023 4.80081 4.97862 5.07822 5.20442 5.34926 5.38804 5.41063 5.44656 5.47296 5.51772 5.63649 5.67613 5.69624 5.70889 5.78667 5.79731 5.88363 5.96117 6.01694 6.19326 6.27069 6.29687 6.36047 6.49991 6.52365 6.53825 6.69549 6.72976 6.81916 6.85832 7.02072 7.23332 7.25897 7.29262 7.43014 7.70122 7.73907 7.87916 8.05783 8.50453 9.10977 9.68061 11.16815 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.003020 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.122670 B = 9269.673884 C = 9442.500074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.054 4.054 5 C -0.120 4.120 6 C -0.083 4.083 7 C 0.092 3.908 8 N -0.678 5.678 9 C 0.069 3.931 10 C -0.057 4.057 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.073 4.073 23 C -0.121 4.121 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.339 0.661 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.258 0.742 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 -0.679 -9.655 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.055 4.055 5 C -0.177 4.177 6 C -0.084 4.084 7 C -0.037 4.037 8 N -0.309 5.309 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.074 4.074 23 C -0.177 4.177 24 C -0.148 4.148 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.158 0.842 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.165 0.005 -9.617 23.248 hybrid contribution 0.660 -0.950 0.650 1.327 sum -20.506 -0.945 -8.967 22.401 Atomic orbital electron populations 1.20761 0.91511 1.02578 1.02018 1.19825 0.95742 0.93180 0.99773 1.20856 0.93543 0.97320 1.03152 1.19728 0.93272 0.95043 0.97440 1.20879 1.01366 0.93536 1.01903 1.19544 0.95292 0.92043 1.01513 1.20930 0.90138 1.01064 0.91568 1.60630 1.09141 1.50103 1.11071 1.22136 0.85560 0.99689 0.98552 1.20615 0.98792 0.94994 0.91353 1.21595 0.98736 0.96546 1.00413 1.21766 0.97665 0.97229 1.01946 1.19127 0.87305 0.96890 0.97085 1.21279 0.91282 1.49334 0.92423 0.92252 1.25018 0.97114 0.95752 0.96767 1.69977 1.01188 1.51565 1.31071 0.86615 0.78753 0.77456 0.85661 1.19774 1.21218 1.21163 1.19751 0.93633 0.94812 0.99181 1.20884 1.00184 0.94044 1.02582 1.20786 0.93355 0.97330 1.03318 0.91448 0.91742 0.91697 0.86447 0.91687 0.91916 0.89627 0.90368 0.94514 0.84205 0.95915 0.91568 0.93864 0.92767 0.94219 0.94148 0.91753 0.94853 0.96949 0.96686 0.93248 0.90997 0.91728 0.91163 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.49 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.44 9.36 -39.59 -0.37 -1.81 16 4 C -0.05 -0.66 5.88 -104.63 -0.62 -1.27 16 5 C -0.12 -1.31 9.19 36.00 0.33 -0.98 16 6 C -0.08 -1.04 5.39 -104.62 -0.56 -1.61 16 7 C 0.09 1.18 4.60 -4.97 -0.02 1.15 16 8 N -0.68 -9.90 5.66 -115.06 -0.65 -10.55 16 9 C 0.07 1.18 4.65 -3.82 -0.02 1.17 16 10 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 11 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 13 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 14 C -0.50 -13.84 7.65 -34.44 -0.26 -14.10 16 15 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.07 -0.85 5.88 -104.62 -0.62 -1.47 16 23 C -0.12 -1.21 9.60 36.01 0.35 -0.86 16 24 C -0.13 -1.40 9.36 -39.58 -0.37 -1.77 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.08 1.06 6.66 -51.93 -0.35 0.72 16 32 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 33 H 0.04 0.46 5.94 -51.93 -0.31 0.15 16 34 H 0.34 4.94 6.76 -39.29 -0.27 4.67 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 42 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -29.50 378.46 -10.12 -39.62 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.76 Total: 1.44 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -2.13 Total: -26.69 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.09 Total: -36.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.50 -10.12 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174323308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.579 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds