Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00347 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.00062 * 180.02562 * 6 4 3 8 8 N 1.46906 * 109.47109 * 90.00122 * 7 6 4 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47191 * 300.00419 * 10 9 8 12 12 C 1.52999 * 109.46983 * 59.99979 * 10 9 8 13 13 C 1.52998 * 109.47380 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47182 * 180.02562 * 13 10 9 15 15 H 1.08001 * 120.00154 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00214 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99912 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00442 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46917 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46978 * 119.99759 * 18 16 14 21 21 H 1.48496 * 109.47253 * 239.99876 * 18 16 14 22 22 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 23 23 C 1.50700 * 120.00162 * 179.72779 * 22 6 4 24 24 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46656 * 89.99715 * 1 2 3 26 26 H 1.08990 * 109.47102 * 210.00122 * 1 2 3 27 27 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 28 28 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47156 * 269.97712 * 5 4 3 30 30 H 1.09001 * 109.46768 * 29.97009 * 5 4 3 31 31 H 1.08997 * 109.47700 * 149.97230 * 5 4 3 32 32 H 1.08992 * 109.46894 * 329.99857 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.00008 * 7 6 4 34 34 H 1.00902 * 111.00068 * 56.04268 * 8 7 6 35 35 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 36 36 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 37 37 H 1.09003 * 109.47221 * 59.99243 * 11 10 9 38 38 H 1.08997 * 109.47170 * 180.02562 * 11 10 9 39 39 H 1.09005 * 109.46721 * 299.99839 * 11 10 9 40 40 H 1.09001 * 109.47612 * 60.00211 * 12 10 9 41 41 H 1.08997 * 109.47506 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.47572 * 300.00136 * 12 10 9 43 43 H 1.08999 * 109.46979 * 300.00363 * 13 10 9 44 44 H 1.08996 * 109.46919 * 59.99709 * 13 10 9 45 45 H 0.97000 * 120.00251 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.47014 * 89.99702 * 23 22 6 47 47 H 1.08996 * 109.47283 * 209.99818 * 23 22 6 48 48 H 1.09004 * 109.46914 * 330.00169 * 23 22 6 49 49 H 1.07999 * 120.00384 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0001 0.0028 8 7 6.2673 0.0005 1.3882 9 6 7.7357 -0.0002 1.4285 10 6 8.2060 0.0011 2.8845 11 6 7.6769 1.2513 3.5902 12 6 7.6758 -1.2472 3.5927 13 6 9.7354 0.0011 2.9265 14 6 10.1985 0.0017 4.3605 15 1 9.4744 0.0025 5.1618 16 6 11.5466 0.0024 4.6496 17 7 12.4284 0.0019 3.6739 18 14 12.1207 0.0038 6.4272 19 1 10.9405 0.0035 7.3285 20 1 12.9393 -1.2083 6.6840 21 1 12.9386 1.2167 6.6822 22 6 3.5805 -1.1972 -0.0036 23 6 4.3339 -2.5023 -0.0087 24 6 2.1981 -1.1972 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1325 -0.0004 29 1 4.5166 2.8168 -1.0264 30 1 3.7447 3.2618 0.5144 31 1 5.2861 2.3718 0.5157 32 1 6.1424 0.8896 -0.5112 33 1 6.1424 -0.8904 -0.5104 34 1 5.8914 -0.7806 1.9046 35 1 8.1127 -0.8906 0.9254 36 1 8.1135 0.8894 0.9243 37 1 6.5873 1.2518 3.5602 38 1 8.0123 1.2524 4.6273 39 1 8.0546 2.1406 3.0856 40 1 8.0527 -2.1379 3.0900 41 1 8.0104 -1.2461 4.6300 42 1 6.5862 -1.2468 3.5628 43 1 10.1126 -0.8893 2.4236 44 1 10.1127 0.8906 2.4220 45 1 13.3768 0.0020 3.8772 46 1 4.5152 -2.8212 1.0178 47 1 3.7451 -3.2598 -0.5258 48 1 5.2866 -2.3699 -0.5215 49 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174323308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = -26.152929 kcal Electronic energy + Delta-G solvation = -23299.798365 eV Core-core repulsion = 20224.485996 eV Total energy + Delta-G solvation = -3075.312369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86996 -39.07940 -36.30426 -34.61517 -34.43718 -33.40231 -29.50340 -28.77974 -28.54139 -27.89509 -27.55437 -26.55795 -24.93314 -23.61426 -21.62319 -20.84556 -19.52542 -18.32822 -17.43156 -16.91197 -16.59083 -16.02596 -15.77483 -15.37915 -15.06124 -14.93582 -14.63515 -14.26149 -14.04075 -13.94965 -13.85269 -13.81105 -13.74025 -13.55033 -13.40404 -13.20707 -12.89465 -12.77647 -12.67334 -12.50940 -12.32487 -12.24371 -12.16251 -12.02415 -11.86798 -11.69820 -11.60069 -11.36304 -10.85487 -10.72668 -10.50541 -9.39411 -9.38972 -9.14926 -8.13646 -6.20291 0.44657 0.52767 1.39975 1.41165 1.53253 2.43952 2.75601 3.20391 3.48273 3.87047 3.89532 4.01739 4.06719 4.18964 4.19947 4.30236 4.39250 4.45716 4.58175 4.64369 4.67330 4.73860 4.78407 4.80449 4.82968 4.84800 4.87387 4.89402 4.97168 5.05468 5.08445 5.09084 5.15639 5.22389 5.22468 5.41313 5.46210 5.52479 5.54836 5.59114 5.65253 5.67049 5.73623 5.85715 5.88209 5.93730 6.08477 6.22548 6.38114 6.52058 6.95049 7.46968 8.98900 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.003020 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.122670 B = 9269.673884 C = 9442.500074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.068 4.068 5 C -0.116 4.116 6 C -0.103 4.103 7 C 0.097 3.903 8 N -0.672 5.672 9 C 0.082 3.918 10 C -0.053 4.053 11 C -0.105 4.105 12 C -0.121 4.121 13 C 0.040 3.960 14 C -0.512 4.512 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.955 3.045 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.283 1.283 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.341 0.659 35 H 0.018 0.982 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.063 0.937 43 H -0.015 1.015 44 H -0.015 1.015 45 H 0.259 0.741 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.758 -0.995 -9.129 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.159 4.159 4 C -0.068 4.068 5 C -0.173 4.173 6 C -0.103 4.103 7 C -0.031 4.031 8 N -0.304 5.304 9 C -0.047 4.047 10 C -0.054 4.054 11 C -0.163 4.163 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.082 4.082 23 C -0.175 4.175 24 C -0.157 4.157 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.629 -0.313 -9.090 25.319 hybrid contribution 1.354 -0.846 0.420 1.650 sum -22.275 -1.158 -8.670 23.931 Atomic orbital electron populations 1.20809 0.89473 1.03455 1.02974 1.20210 0.97347 0.92854 0.98401 1.21100 0.93287 0.98390 1.03126 1.19937 0.94010 0.95204 0.97700 1.20840 1.00493 0.93573 1.02386 1.19545 0.94724 0.92795 1.03253 1.20877 0.90868 1.01124 0.90247 1.60557 1.07061 1.50183 1.12589 1.21836 0.87369 0.99183 0.96282 1.20473 0.95128 0.96122 0.93638 1.21485 0.99912 0.95843 0.99021 1.21670 0.99490 0.96270 1.00415 1.19005 0.91156 0.94035 0.95553 1.21642 0.91557 1.48283 0.93495 0.91694 1.25910 0.97471 0.95588 1.01158 1.70113 1.01518 1.52913 1.33411 0.85537 0.78467 0.77438 0.80476 1.18518 1.20807 1.20854 1.19977 0.94286 0.95028 0.98935 1.20892 1.00043 0.93859 1.02742 1.21066 0.93192 0.98357 1.03077 0.90346 0.90819 0.90919 0.84951 0.90772 0.90977 0.91382 0.90600 0.94126 0.83926 0.96333 0.92348 0.91702 0.94395 0.94998 0.94331 0.93502 0.91833 0.99708 0.99682 0.93186 0.90938 0.90168 0.91712 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.09 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.14 -2.85 9.36 22.27 0.21 -2.64 16 4 C -0.07 -1.55 5.88 -19.87 -0.12 -1.67 16 5 C -0.12 -2.42 9.19 71.23 0.65 -1.77 16 6 C -0.10 -2.45 5.39 -19.86 -0.11 -2.56 16 7 C 0.10 2.43 4.60 85.56 0.39 2.82 16 8 N -0.67 -18.99 5.66 -517.92 -2.93 -21.92 16 9 C 0.08 2.83 4.65 86.31 0.40 3.23 16 10 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 11 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 12 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 13 C 0.04 2.09 4.04 29.85 0.12 2.21 16 14 C -0.51 -28.47 7.65 25.60 0.20 -28.27 16 15 H 0.06 3.48 5.68 -2.91 -0.02 3.47 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 18 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 C -0.08 -1.77 5.88 -19.86 -0.12 -1.88 16 23 C -0.12 -2.19 9.60 71.24 0.68 -1.50 16 24 C -0.14 -2.70 9.36 22.27 0.21 -2.49 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 28 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.32 8.09 -2.39 -0.02 1.31 16 31 H 0.07 1.65 6.66 -2.39 -0.02 1.64 16 32 H 0.08 1.92 6.70 -2.39 -0.02 1.90 16 33 H 0.04 0.99 5.94 -2.38 -0.01 0.98 16 34 H 0.34 9.38 6.76 -89.69 -0.61 8.77 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.21 7.60 -2.39 -0.02 2.19 16 38 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 39 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 42 H 0.06 1.93 6.57 -2.38 -0.02 1.91 16 43 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 48 H 0.06 1.25 5.94 -2.39 -0.01 1.23 16 49 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -63.75 378.46 4.38 -59.36 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.30 Total: 19.37 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 4.70 Total: -46.26 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.65 Total: -79.25 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.75 4.38 -59.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174323308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.209 kcal (2) G-P(sol) polarization free energy of solvation -63.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds