Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 C 1.53001 * 109.47410 * 270.02155 * 7 6 5 9 9 N 1.46896 * 109.47129 * 180.02562 * 8 7 6 10 10 C 1.46899 * 110.99819 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46890 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47361 * 299.99936 * 11 10 9 13 13 C 1.52995 * 109.47006 * 60.00349 * 11 10 9 14 14 C 1.53007 * 109.46755 * 180.02562 * 11 10 9 15 15 C 1.50704 * 109.46742 * 180.02562 * 14 11 10 16 16 H 1.07996 * 120.00016 * 359.97438 * 15 14 11 17 17 C 1.37876 * 119.99888 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46885 * 60.00096 * 19 17 15 21 21 H 1.48496 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47164 * 300.00516 * 19 17 15 23 23 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 24 24 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 30 30 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 32 32 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 33 33 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 34 34 H 1.09001 * 109.46652 * 300.00140 * 8 7 6 35 35 H 1.08996 * 109.46778 * 59.99943 * 8 7 6 36 36 H 1.00902 * 111.00093 * 303.95329 * 9 8 7 37 37 H 1.08993 * 109.47142 * 299.99782 * 10 9 8 38 38 H 1.09001 * 109.46897 * 60.00343 * 10 9 8 39 39 H 1.09003 * 109.46882 * 59.99971 * 12 11 10 40 40 H 1.08997 * 109.47506 * 179.97438 * 12 11 10 41 41 H 1.08996 * 109.47175 * 300.00023 * 12 11 10 42 42 H 1.08993 * 109.47468 * 59.99745 * 13 11 10 43 43 H 1.09007 * 109.47030 * 180.02562 * 13 11 10 44 44 H 1.09000 * 109.47181 * 299.99391 * 13 11 10 45 45 H 1.08993 * 109.47073 * 299.99859 * 14 11 10 46 46 H 1.08996 * 109.47449 * 60.00180 * 14 11 10 47 47 H 0.96996 * 120.00106 * 179.97438 * 18 17 15 48 48 H 1.07997 * 119.99935 * 179.97438 * 23 6 5 49 49 H 1.07999 * 119.99681 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0001 9 7 5.4761 6.8332 0.0004 10 6 6.9446 6.8724 0.0010 11 6 7.4158 8.3281 0.0009 12 6 6.8873 9.0352 -1.2487 13 6 6.8863 9.0356 1.2498 14 6 8.9454 8.3689 0.0009 15 6 9.4095 9.8027 0.0015 16 1 8.6860 10.6045 0.0014 17 6 10.7578 10.0908 0.0021 18 7 11.6389 9.1143 0.0017 19 14 11.3333 11.8679 0.0020 20 1 10.8191 12.5547 1.2142 21 1 12.8177 11.9076 0.0022 22 1 10.8203 12.5543 -1.2108 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0726 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5597 -2.1324 31 1 2.9047 3.8844 -2.1326 32 1 3.0932 5.9619 -0.8901 33 1 3.0932 5.9620 0.8898 34 1 5.3498 4.9344 0.8899 35 1 5.3498 4.9343 -0.8901 36 1 5.1006 7.3498 -0.7808 37 1 7.3211 6.3683 0.8910 38 1 7.3218 6.3687 -0.8890 39 1 5.7977 9.0061 -1.2491 40 1 7.2226 10.0723 -1.2485 41 1 7.2646 8.5311 -2.1384 42 1 7.2628 8.5319 2.1400 43 1 7.2216 10.0728 1.2495 44 1 5.7966 9.0066 1.2493 45 1 9.3222 7.8651 0.8909 46 1 9.3223 7.8650 -0.8890 47 1 12.5874 9.3170 0.0018 48 1 2.9039 3.8848 2.1323 49 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174408880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -16.477763 kcal Electronic energy + Delta-G solvation = -22164.326253 eV Core-core repulsion = 19089.433430 eV Total energy + Delta-G solvation = -3074.892822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75347 -37.71705 -35.65481 -34.05689 -32.32682 -31.08501 -31.02268 -27.94831 -26.82200 -26.30282 -25.13881 -23.73582 -22.89861 -22.37398 -21.73045 -20.55997 -17.83398 -16.38004 -16.21714 -16.04336 -15.49591 -15.31171 -14.74590 -14.25804 -14.12528 -13.93803 -13.81914 -13.61247 -13.30792 -13.12160 -12.84944 -12.57298 -12.42634 -11.99187 -11.88306 -11.85394 -11.60799 -11.39291 -11.20459 -10.99895 -10.97274 -10.90426 -10.78765 -10.72895 -10.45822 -10.22798 -10.11333 -9.65384 -9.07699 -9.00627 -8.83550 -8.61918 -8.29414 -8.06376 -5.93986 -3.94163 1.16254 1.24906 3.36125 3.40668 3.42905 3.56074 4.35890 4.49667 4.54331 4.55602 4.81678 4.84754 4.99284 5.03296 5.11774 5.21353 5.27982 5.33556 5.39215 5.41579 5.55681 5.59969 5.63877 5.71077 5.77006 5.81469 5.86450 5.93300 5.99323 6.03093 6.10309 6.26850 6.29160 6.36931 6.43211 6.53068 6.54330 6.68969 6.81704 6.85451 6.86055 7.23556 7.25308 7.28872 7.42883 7.69977 7.74012 7.88480 8.06314 8.50734 9.11013 9.68369 11.17626 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.045324 B = 0.002158 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.625388 B =12973.545453 C =13082.279927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.079 4.079 8 C 0.065 3.935 9 N -0.688 5.688 10 C 0.071 3.929 11 C -0.059 4.059 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.337 0.663 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.123 0.877 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.678 -15.615 -0.724 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.117 4.117 8 C -0.065 4.065 9 N -0.320 5.320 10 C -0.058 4.058 11 C -0.060 4.060 12 C -0.186 4.186 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.141 0.859 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.528 -15.582 -0.042 26.576 hybrid contribution 0.768 0.625 -0.951 1.373 sum -20.760 -14.957 -0.993 25.606 Atomic orbital electron populations 1.21747 0.94805 1.01590 1.02219 1.20533 0.96121 0.92813 1.02748 1.19871 0.99739 0.96214 0.93284 1.20990 1.00208 0.94898 0.97420 1.21060 0.99694 0.94812 0.97695 1.19902 0.98667 0.96312 0.93110 1.20593 0.95624 0.92060 1.03406 1.21887 0.93318 0.90726 1.00537 1.60570 1.09547 1.11946 1.49899 1.22098 0.85541 0.98479 0.99681 1.20638 0.98880 0.91417 0.95026 1.21769 0.97680 1.01952 0.97219 1.21595 0.98704 1.00423 0.96584 1.19120 0.87285 0.97066 0.96898 1.21205 0.91277 0.92378 1.49676 0.92340 1.25025 0.97103 0.96808 0.95731 1.69958 1.01293 1.31196 1.51314 0.86714 0.77438 0.85640 0.78526 1.20315 1.21467 1.20382 1.21081 0.99350 0.94764 0.97806 1.21004 1.00115 0.94937 0.97421 0.92489 0.92591 0.92568 0.91131 0.91161 0.86361 0.86201 0.91262 0.90091 0.91199 0.95663 0.84393 0.91627 0.95936 0.94793 0.91721 0.94135 0.94198 0.92719 0.93878 0.96696 0.96946 0.93129 0.85925 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.08 -0.58 6.07 -27.88 -0.17 -0.75 16 3 C -0.09 -0.82 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 5 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 6 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 7 C -0.08 -0.84 5.60 -27.88 -0.16 -0.99 16 8 C 0.06 0.82 5.67 -3.83 -0.02 0.80 16 9 N -0.69 -10.07 5.71 -113.78 -0.65 -10.72 16 10 C 0.07 1.25 4.65 -3.82 -0.02 1.23 16 11 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C -0.12 -2.27 8.06 37.15 0.30 -1.97 16 14 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.99 7.65 -34.44 -0.26 -14.25 16 16 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.11 -1.13 9.70 -39.59 -0.38 -1.51 16 24 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.34 4.68 6.77 -39.29 -0.27 4.42 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.14 6.62 -51.92 -0.34 0.80 16 44 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -29.66 386.82 -10.83 -40.49 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -9.14 Total: 0.39 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -2.58 Total: -26.38 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.09 Total: -37.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.66 -10.83 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174408880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.013 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds