Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 C 1.53001 * 109.47410 * 270.02155 * 7 6 5 9 9 N 1.46896 * 109.47129 * 180.02562 * 8 7 6 10 10 C 1.46899 * 110.99819 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46890 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47361 * 299.99936 * 11 10 9 13 13 C 1.52995 * 109.47006 * 60.00349 * 11 10 9 14 14 C 1.53007 * 109.46755 * 180.02562 * 11 10 9 15 15 C 1.50704 * 109.46742 * 180.02562 * 14 11 10 16 16 H 1.07996 * 120.00016 * 359.97438 * 15 14 11 17 17 C 1.37876 * 119.99888 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46885 * 60.00096 * 19 17 15 21 21 H 1.48496 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47164 * 300.00516 * 19 17 15 23 23 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 24 24 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 30 30 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 32 32 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 33 33 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 34 34 H 1.09001 * 109.46652 * 300.00140 * 8 7 6 35 35 H 1.08996 * 109.46778 * 59.99943 * 8 7 6 36 36 H 1.00902 * 111.00093 * 303.95329 * 9 8 7 37 37 H 1.08993 * 109.47142 * 299.99782 * 10 9 8 38 38 H 1.09001 * 109.46897 * 60.00343 * 10 9 8 39 39 H 1.09003 * 109.46882 * 59.99971 * 12 11 10 40 40 H 1.08997 * 109.47506 * 179.97438 * 12 11 10 41 41 H 1.08996 * 109.47175 * 300.00023 * 12 11 10 42 42 H 1.08993 * 109.47468 * 59.99745 * 13 11 10 43 43 H 1.09007 * 109.47030 * 180.02562 * 13 11 10 44 44 H 1.09000 * 109.47181 * 299.99391 * 13 11 10 45 45 H 1.08993 * 109.47073 * 299.99859 * 14 11 10 46 46 H 1.08996 * 109.47449 * 60.00180 * 14 11 10 47 47 H 0.96996 * 120.00106 * 179.97438 * 18 17 15 48 48 H 1.07997 * 119.99935 * 179.97438 * 23 6 5 49 49 H 1.07999 * 119.99681 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0001 9 7 5.4761 6.8332 0.0004 10 6 6.9446 6.8724 0.0010 11 6 7.4158 8.3281 0.0009 12 6 6.8873 9.0352 -1.2487 13 6 6.8863 9.0356 1.2498 14 6 8.9454 8.3689 0.0009 15 6 9.4095 9.8027 0.0015 16 1 8.6860 10.6045 0.0014 17 6 10.7578 10.0908 0.0021 18 7 11.6389 9.1143 0.0017 19 14 11.3333 11.8679 0.0020 20 1 10.8191 12.5547 1.2142 21 1 12.8177 11.9076 0.0022 22 1 10.8203 12.5543 -1.2108 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0726 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0927 1.5597 -2.1324 31 1 2.9047 3.8844 -2.1326 32 1 3.0932 5.9619 -0.8901 33 1 3.0932 5.9620 0.8898 34 1 5.3498 4.9344 0.8899 35 1 5.3498 4.9343 -0.8901 36 1 5.1006 7.3498 -0.7808 37 1 7.3211 6.3683 0.8910 38 1 7.3218 6.3687 -0.8890 39 1 5.7977 9.0061 -1.2491 40 1 7.2226 10.0723 -1.2485 41 1 7.2646 8.5311 -2.1384 42 1 7.2628 8.5319 2.1400 43 1 7.2216 10.0728 1.2495 44 1 5.7966 9.0066 1.2493 45 1 9.3222 7.8651 0.8909 46 1 9.3223 7.8650 -0.8890 47 1 12.5874 9.3170 0.0018 48 1 2.9039 3.8848 2.1323 49 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174408880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = -30.288553 kcal Electronic energy + Delta-G solvation = -22164.925134 eV Core-core repulsion = 19089.433430 eV Total energy + Delta-G solvation = -3075.491703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46911 -39.21341 -36.71589 -35.17630 -34.17689 -31.98732 -31.78618 -29.24289 -28.43714 -27.88503 -26.52235 -24.91006 -23.77382 -23.60336 -22.77262 -21.27882 -19.49836 -18.32918 -17.08914 -17.02160 -16.64324 -16.35608 -16.13775 -15.66315 -15.27030 -14.97537 -14.65957 -14.53656 -14.32981 -14.21359 -14.05403 -13.87214 -13.78567 -13.57919 -13.09122 -12.80516 -12.72755 -12.57343 -12.55645 -12.31423 -12.27187 -12.20191 -12.12431 -11.91750 -11.83652 -11.63051 -11.60627 -11.36442 -10.86108 -10.74262 -10.49815 -9.79618 -9.37917 -9.30430 -8.13505 -6.20844 0.43727 0.53013 1.41206 1.43735 1.51012 2.44114 2.82431 3.20014 3.28504 3.89034 3.90571 4.07484 4.14970 4.15834 4.18717 4.24282 4.33767 4.40724 4.42568 4.52366 4.62902 4.64753 4.69097 4.74892 4.76722 4.81520 4.95130 5.01921 5.07431 5.08797 5.09311 5.10554 5.21771 5.22654 5.25921 5.28029 5.39246 5.51889 5.54136 5.55711 5.58971 5.66061 5.75678 5.77810 5.87562 5.92843 6.07387 6.16119 6.36863 6.54926 6.94074 7.46347 8.98620 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.045324 B = 0.002158 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.625388 B =12973.545453 C =13082.279927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.095 4.095 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.067 4.067 8 C 0.069 3.931 9 N -0.682 5.682 10 C 0.083 3.917 11 C -0.057 4.057 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.040 3.960 15 C -0.515 4.515 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.267 1.267 23 C -0.124 4.124 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.345 0.655 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.069 0.931 45 H -0.017 1.017 46 H -0.017 1.017 47 H 0.259 0.741 48 H 0.128 0.872 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.716 -15.398 -1.021 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.095 4.095 7 C -0.105 4.105 8 C -0.060 4.060 9 N -0.314 5.314 10 C -0.047 4.047 11 C -0.057 4.057 12 C -0.180 4.180 13 C -0.164 4.164 14 C 0.002 3.998 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.192 1.192 23 C -0.142 4.142 24 C -0.144 4.144 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.001 0.999 46 H 0.001 0.999 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.595 -15.361 -0.341 28.157 hybrid contribution 1.373 0.460 -0.852 1.680 sum -22.222 -14.901 -1.193 26.782 Atomic orbital electron populations 1.21727 0.94179 1.02354 1.01859 1.20581 0.96588 0.91558 1.03443 1.20184 0.99034 0.97230 0.93103 1.21252 0.99996 0.94855 0.98323 1.21258 0.99778 0.95307 0.97933 1.19946 0.99643 0.96342 0.93561 1.20460 0.93682 0.92484 1.03881 1.21877 0.94865 0.89242 1.00037 1.60494 1.07187 1.13457 1.50289 1.21798 0.87662 0.96337 0.98859 1.20514 0.95145 0.93602 0.96446 1.21687 0.99880 1.00413 0.95977 1.21503 1.00208 0.99062 0.95636 1.19008 0.91282 0.95622 0.93880 1.21595 0.91628 0.93436 1.48637 0.91491 1.25958 0.97467 1.01373 0.95524 1.70108 1.01551 1.33599 1.52685 0.85598 0.76779 0.80161 0.79102 1.19311 1.21404 1.19219 1.21263 0.99598 0.95307 0.98016 1.21252 0.99950 0.94855 0.98344 0.91185 0.92927 0.92947 0.90479 0.90458 0.84835 0.85349 0.90282 0.90063 0.92030 0.95852 0.83487 0.92798 0.96652 0.91196 0.93353 0.94526 0.95225 0.94184 0.91214 0.99900 0.99872 0.93184 0.85420 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.08 -1.00 6.07 29.85 0.18 -0.82 16 3 C -0.10 -1.58 5.13 -19.86 -0.10 -1.68 16 4 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 5 C -0.12 -2.34 9.70 22.27 0.22 -2.12 16 6 C -0.09 -1.87 5.13 -19.87 -0.10 -1.98 16 7 C -0.07 -1.32 5.60 29.85 0.17 -1.15 16 8 C 0.07 1.66 5.67 86.30 0.49 2.15 16 9 N -0.68 -18.82 5.71 -513.90 -2.94 -21.75 16 10 C 0.08 2.91 4.65 86.30 0.40 3.31 16 11 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 12 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 13 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 14 C 0.04 2.09 4.04 29.85 0.12 2.21 16 15 C -0.51 -28.78 7.65 25.60 0.20 -28.58 16 16 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 17 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 18 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 19 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 24 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 29 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.35 8.66 6.77 -89.69 -0.61 8.05 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 40 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.63 6.62 -2.38 -0.02 1.61 16 44 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 45 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 49 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -64.32 386.82 4.16 -60.17 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.28 Total: 17.62 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.51 Total: -45.13 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.65 Total: -79.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.32 4.16 -60.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174408880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.877 kcal (2) G-P(sol) polarization free energy of solvation -64.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds