Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00061 * 180.34228 * 3 2 1 5 5 C 1.38234 * 119.99689 * 359.90912 * 4 3 2 6 6 C 1.50703 * 119.99503 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46915 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47515 * 59.97544 * 6 5 4 9 9 C 1.53006 * 109.46861 * 299.97131 * 6 5 4 10 10 N 1.46900 * 109.46556 * 185.00377 * 9 6 5 11 11 C 1.46905 * 110.99600 * 180.02562 * 10 9 6 12 12 C 1.52996 * 109.46995 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47434 * 299.99898 * 12 11 10 14 14 C 1.53007 * 109.47206 * 59.99923 * 12 11 10 15 15 C 1.53005 * 109.47167 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47231 * 179.97438 * 15 12 11 17 17 H 1.08001 * 120.00063 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00120 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00271 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46715 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47128 * 119.99870 * 20 18 16 23 23 H 1.48493 * 109.46995 * 239.99986 * 20 18 16 24 24 C 1.38235 * 120.00205 * 0.04302 * 5 4 3 25 25 C 1.38230 * 119.99899 * 0.02562 * 24 5 4 26 26 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 27 27 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 28 28 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 29 29 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 30 30 H 1.07997 * 119.99835 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46925 * 299.99866 * 8 6 5 32 32 H 1.09000 * 109.47072 * 59.99365 * 8 6 5 33 33 H 1.08998 * 109.47012 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47037 * 305.00506 * 9 6 5 35 35 H 1.08994 * 109.46747 * 65.00795 * 9 6 5 36 36 H 1.00896 * 111.00236 * 303.95364 * 10 9 6 37 37 H 1.09000 * 109.47250 * 299.99821 * 11 10 9 38 38 H 1.08992 * 109.47160 * 59.99977 * 11 10 9 39 39 H 1.09005 * 109.46721 * 60.00018 * 13 12 11 40 40 H 1.08996 * 109.47334 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46962 * 300.00291 * 13 12 11 42 42 H 1.09000 * 109.47065 * 60.00121 * 14 12 11 43 43 H 1.09004 * 109.46973 * 179.97438 * 14 12 11 44 44 H 1.08997 * 109.46738 * 299.99844 * 14 12 11 45 45 H 1.08992 * 109.47229 * 300.00162 * 15 12 11 46 46 H 1.09002 * 109.46659 * 60.00058 * 15 12 11 47 47 H 0.96998 * 119.99870 * 180.02562 * 19 18 16 48 48 H 1.08001 * 119.99730 * 180.02562 * 24 5 4 49 49 H 1.08000 * 120.00376 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0072 5 6 4.2717 0.0000 -0.0124 6 6 5.7787 0.0002 -0.0196 7 1 6.1421 -1.0275 -0.0226 8 6 6.2947 0.7199 1.2280 9 6 6.2826 0.7229 -1.2705 10 7 7.7463 0.6193 -1.3395 11 6 8.2669 1.3040 -2.5304 12 6 9.7910 1.1752 -2.5673 13 6 10.3873 1.8130 -1.3108 14 6 10.1767 -0.3045 -2.6202 15 6 10.3332 1.8878 -3.8080 16 6 11.8345 1.7615 -3.8439 17 1 12.3503 1.2261 -3.0605 18 6 12.5496 2.3294 -4.8770 19 7 11.9214 2.9808 -5.8313 20 14 14.4104 2.1722 -4.9220 21 1 14.8702 1.3962 -3.7424 22 1 14.8180 1.4700 -6.1654 23 1 15.0222 3.5250 -4.8943 24 6 3.5805 -1.1971 -0.0114 25 6 2.1982 -1.1971 -0.0057 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6582 2.1325 0.0045 30 1 4.1205 2.1325 -0.0076 31 1 5.9313 1.7476 1.2309 32 1 5.9356 0.2051 2.1191 33 1 7.3847 0.7195 1.2229 34 1 5.8437 0.2644 -2.1567 35 1 5.9945 1.7730 -1.2242 36 1 8.1743 0.9793 -0.4998 37 1 7.8419 0.8499 -3.4255 38 1 7.9926 2.3581 -2.4925 39 1 10.0010 1.3049 -0.4272 40 1 11.4731 1.7208 -1.3369 41 1 10.1125 2.8671 -1.2731 42 1 9.7520 -0.7589 -3.5153 43 1 11.2626 -0.3962 -2.6469 44 1 9.7905 -0.8124 -1.7366 45 1 9.9085 1.4331 -4.7028 46 1 10.0584 2.9419 -3.7706 47 1 12.4244 3.3800 -6.5582 48 1 4.1206 -2.1324 -0.0151 49 1 1.6582 -2.1324 -0.0053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174416436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = -12.814653 kcal Electronic energy + Delta-G solvation = -22684.560545 eV Core-core repulsion = 19609.826567 eV Total energy + Delta-G solvation = -3074.733978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84823 -37.82076 -36.03068 -33.43035 -32.15349 -31.12298 -30.79653 -27.12373 -26.91815 -26.30511 -26.09994 -24.34520 -23.04554 -22.37906 -21.55048 -19.93863 -17.86360 -16.50461 -16.25560 -15.88417 -15.35549 -15.06844 -14.72732 -14.27931 -14.12454 -13.91240 -13.72758 -13.49473 -13.11338 -13.05973 -12.90564 -12.50118 -12.40512 -12.07653 -12.01584 -11.97504 -11.75371 -11.37682 -11.04724 -10.98951 -10.88899 -10.84841 -10.74324 -10.67663 -10.46942 -10.21859 -10.06666 -9.65561 -9.07003 -9.00322 -8.80791 -8.59981 -8.30154 -8.04317 -5.94436 -3.94365 1.17766 1.25825 3.33598 3.41387 3.44969 3.58056 4.35575 4.51009 4.59825 4.68044 4.83068 4.86146 4.96008 5.06935 5.17442 5.30284 5.30447 5.36021 5.41379 5.49689 5.57154 5.64656 5.66619 5.77103 5.81727 5.88423 5.92281 5.96157 6.00433 6.09489 6.13594 6.29321 6.30788 6.37408 6.42369 6.53897 6.56811 6.69283 6.81834 6.85643 6.86951 7.23642 7.26015 7.29287 7.44057 7.71108 7.74914 7.88539 8.06209 8.50723 9.11323 9.68324 11.17281 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.002478 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.865851 B =11295.412483 C =11525.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.075 4.075 6 C -0.052 4.052 7 H 0.087 0.913 8 C -0.145 4.145 9 C 0.067 3.933 10 N -0.687 5.687 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.112 4.112 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.337 0.663 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.258 0.742 48 H 0.122 0.878 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.143 -5.868 14.192 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.075 4.075 6 C -0.070 4.070 7 H 0.105 0.895 8 C -0.203 4.203 9 C -0.062 4.062 10 N -0.320 5.320 11 C -0.058 4.058 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.130 4.130 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.140 0.860 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.117 -6.387 13.731 25.180 hybrid contribution 0.889 1.011 -0.016 1.346 sum -19.228 -5.376 13.715 24.222 Atomic orbital electron populations 1.20776 0.91435 1.02663 1.02118 1.19898 0.95938 0.93304 1.00468 1.21010 0.94194 0.97428 1.01156 1.21017 0.93979 0.97845 0.99991 1.19882 0.95417 0.93083 0.99131 1.20176 0.89969 1.01562 0.95318 0.89482 1.21865 1.01364 1.00116 0.96929 1.21958 0.89379 0.97653 0.97229 1.60604 1.03744 1.61369 1.06254 1.22098 0.96621 0.94989 0.92134 1.20625 0.91023 0.96476 0.97728 1.21773 1.02072 0.98840 0.95956 1.21602 1.00965 0.95030 0.99747 1.19133 0.95657 0.94812 0.90865 1.21279 0.91974 1.33291 1.07782 0.92231 1.25031 0.98171 0.95641 0.95885 1.69981 1.35210 1.36459 1.12118 0.86602 0.86280 0.77641 0.77878 1.19774 1.21175 1.21222 1.21086 0.94051 0.97671 1.00166 1.21001 0.94189 0.97403 1.01234 0.91386 0.91664 0.91666 0.86316 0.86179 0.92792 0.92595 0.91803 0.91212 0.95589 0.84246 0.91639 0.95976 0.94861 0.91700 0.94130 0.94194 0.92716 0.93879 0.96678 0.96944 0.93250 0.86015 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.10 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.13 8.76 -39.58 -0.35 -1.48 16 5 C -0.07 -0.79 4.78 -104.62 -0.50 -1.29 16 6 C -0.05 -0.55 2.77 -91.77 -0.25 -0.81 16 7 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 8 C -0.15 -1.42 8.78 37.16 0.33 -1.10 16 9 C 0.07 0.85 4.88 -3.82 -0.02 0.83 16 10 N -0.69 -10.03 5.71 -113.78 -0.65 -10.68 16 11 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 12 C -0.06 -1.17 0.60 -154.50 -0.09 -1.26 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 14 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 16 C -0.50 -13.90 7.65 -34.44 -0.26 -14.16 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.11 -1.12 9.67 -39.59 -0.38 -1.50 16 25 C -0.12 -1.11 9.70 -39.59 -0.38 -1.50 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.12 1.15 7.16 -52.49 -0.38 0.77 16 31 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.63 6.68 -51.93 -0.35 0.29 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.33 7.57 -51.93 -0.39 -0.06 16 36 H 0.34 4.68 5.02 -39.29 -0.20 4.48 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 44 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.12 1.06 7.95 -52.49 -0.42 0.65 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -29.69 379.76 -10.27 -39.96 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.87 Total: 1.00 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.19 Total: -26.40 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.09 Total: -36.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.69 -10.27 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174416436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.143 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds