Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00061 * 180.34228 * 3 2 1 5 5 C 1.38234 * 119.99689 * 359.90912 * 4 3 2 6 6 C 1.50703 * 119.99503 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46915 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47515 * 59.97544 * 6 5 4 9 9 C 1.53006 * 109.46861 * 299.97131 * 6 5 4 10 10 N 1.46900 * 109.46556 * 185.00377 * 9 6 5 11 11 C 1.46905 * 110.99600 * 180.02562 * 10 9 6 12 12 C 1.52996 * 109.46995 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47434 * 299.99898 * 12 11 10 14 14 C 1.53007 * 109.47206 * 59.99923 * 12 11 10 15 15 C 1.53005 * 109.47167 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47231 * 179.97438 * 15 12 11 17 17 H 1.08001 * 120.00063 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00120 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00271 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46715 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47128 * 119.99870 * 20 18 16 23 23 H 1.48493 * 109.46995 * 239.99986 * 20 18 16 24 24 C 1.38235 * 120.00205 * 0.04302 * 5 4 3 25 25 C 1.38230 * 119.99899 * 0.02562 * 24 5 4 26 26 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 27 27 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 28 28 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 29 29 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 30 30 H 1.07997 * 119.99835 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46925 * 299.99866 * 8 6 5 32 32 H 1.09000 * 109.47072 * 59.99365 * 8 6 5 33 33 H 1.08998 * 109.47012 * 179.97438 * 8 6 5 34 34 H 1.08999 * 109.47037 * 305.00506 * 9 6 5 35 35 H 1.08994 * 109.46747 * 65.00795 * 9 6 5 36 36 H 1.00896 * 111.00236 * 303.95364 * 10 9 6 37 37 H 1.09000 * 109.47250 * 299.99821 * 11 10 9 38 38 H 1.08992 * 109.47160 * 59.99977 * 11 10 9 39 39 H 1.09005 * 109.46721 * 60.00018 * 13 12 11 40 40 H 1.08996 * 109.47334 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46962 * 300.00291 * 13 12 11 42 42 H 1.09000 * 109.47065 * 60.00121 * 14 12 11 43 43 H 1.09004 * 109.46973 * 179.97438 * 14 12 11 44 44 H 1.08997 * 109.46738 * 299.99844 * 14 12 11 45 45 H 1.08992 * 109.47229 * 300.00162 * 15 12 11 46 46 H 1.09002 * 109.46659 * 60.00058 * 15 12 11 47 47 H 0.96998 * 119.99870 * 180.02562 * 19 18 16 48 48 H 1.08001 * 119.99730 * 180.02562 * 24 5 4 49 49 H 1.08000 * 120.00376 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0072 5 6 4.2717 0.0000 -0.0124 6 6 5.7787 0.0002 -0.0196 7 1 6.1421 -1.0275 -0.0226 8 6 6.2947 0.7199 1.2280 9 6 6.2826 0.7229 -1.2705 10 7 7.7463 0.6193 -1.3395 11 6 8.2669 1.3040 -2.5304 12 6 9.7910 1.1752 -2.5673 13 6 10.3873 1.8130 -1.3108 14 6 10.1767 -0.3045 -2.6202 15 6 10.3332 1.8878 -3.8080 16 6 11.8345 1.7615 -3.8439 17 1 12.3503 1.2261 -3.0605 18 6 12.5496 2.3294 -4.8770 19 7 11.9214 2.9808 -5.8313 20 14 14.4104 2.1722 -4.9220 21 1 14.8702 1.3962 -3.7424 22 1 14.8180 1.4700 -6.1654 23 1 15.0222 3.5250 -4.8943 24 6 3.5805 -1.1971 -0.0114 25 6 2.1982 -1.1971 -0.0057 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6582 2.1325 0.0045 30 1 4.1205 2.1325 -0.0076 31 1 5.9313 1.7476 1.2309 32 1 5.9356 0.2051 2.1191 33 1 7.3847 0.7195 1.2229 34 1 5.8437 0.2644 -2.1567 35 1 5.9945 1.7730 -1.2242 36 1 8.1743 0.9793 -0.4998 37 1 7.8419 0.8499 -3.4255 38 1 7.9926 2.3581 -2.4925 39 1 10.0010 1.3049 -0.4272 40 1 11.4731 1.7208 -1.3369 41 1 10.1125 2.8671 -1.2731 42 1 9.7520 -0.7589 -3.5153 43 1 11.2626 -0.3962 -2.6469 44 1 9.7905 -0.8124 -1.7366 45 1 9.9085 1.4331 -4.7028 46 1 10.0584 2.9419 -3.7706 47 1 12.4244 3.3800 -6.5582 48 1 4.1206 -2.1324 -0.0151 49 1 1.6582 -2.1324 -0.0053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174416436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -26.888650 kcal Electronic energy + Delta-G solvation = -22685.170839 eV Core-core repulsion = 19609.826567 eV Total energy + Delta-G solvation = -3075.344272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60291 -39.24158 -37.16924 -34.91660 -33.78680 -31.89846 -31.64820 -29.04750 -27.89655 -27.62415 -27.37711 -25.81241 -24.04805 -23.74973 -22.46581 -20.77819 -19.50257 -18.33563 -17.31753 -17.00161 -16.58394 -16.17260 -15.87093 -15.67773 -15.30032 -14.94269 -14.68615 -14.43160 -14.29034 -14.21476 -14.12149 -13.89494 -13.67400 -13.34740 -13.07333 -12.90729 -12.80931 -12.70814 -12.65577 -12.48696 -12.26347 -12.15249 -12.09333 -11.93777 -11.85189 -11.60122 -11.54557 -11.35737 -10.85882 -10.70990 -10.51152 -9.79435 -9.34149 -9.28850 -8.13874 -6.20869 0.45176 0.53432 1.40397 1.41327 1.53714 2.43893 2.84480 3.19973 3.27784 3.85858 3.91717 4.06271 4.12376 4.14704 4.19277 4.23589 4.25506 4.39749 4.51591 4.53392 4.61233 4.70787 4.78738 4.81193 4.84503 4.85315 4.91094 4.96165 5.00519 5.04872 5.08820 5.15482 5.22346 5.22389 5.27061 5.30988 5.37110 5.52120 5.54358 5.57147 5.59150 5.66510 5.74004 5.79889 5.87733 5.93116 6.08570 6.17021 6.37100 6.55941 6.94521 7.46412 8.98730 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036937 B = 0.002478 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.865851 B =11295.412483 C =11525.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.088 4.088 6 C -0.041 4.041 7 H 0.085 0.915 8 C -0.143 4.143 9 C 0.071 3.929 10 N -0.681 5.681 11 C 0.082 3.918 12 C -0.055 4.055 13 C -0.123 4.123 14 C -0.107 4.107 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.123 4.123 25 C -0.128 4.128 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.345 0.655 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.039 0.961 44 H 0.069 0.931 45 H -0.017 1.017 46 H -0.017 1.017 47 H 0.259 0.741 48 H 0.131 0.869 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -6.807 16.073 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.089 4.089 6 C -0.060 4.060 7 H 0.103 0.897 8 C -0.200 4.200 9 C -0.058 4.058 10 N -0.314 5.314 11 C -0.047 4.047 12 C -0.055 4.055 13 C -0.180 4.180 14 C -0.165 4.165 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.068 0.932 48 H 0.149 0.851 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.574 -7.335 15.636 26.862 hybrid contribution 0.928 1.301 -0.608 1.709 sum -19.646 -6.035 15.028 25.460 Atomic orbital electron populations 1.20819 0.89660 1.03426 1.02966 1.20257 0.97395 0.93101 0.99520 1.21267 0.94120 0.98411 1.01051 1.21148 0.94564 0.97905 1.00400 1.19908 0.95224 0.93543 1.00205 1.20049 0.90264 1.01135 0.94558 0.89661 1.21846 1.01289 1.00195 0.96676 1.21951 0.87865 0.97992 0.98017 1.60527 1.05022 1.60583 1.05291 1.21802 0.94815 0.94863 0.93234 1.20490 0.92711 0.96377 0.95927 1.21693 1.00950 0.98985 0.96377 1.21512 0.99926 0.94555 1.00479 1.19023 0.95153 0.93390 0.92332 1.21646 0.93032 1.32597 1.07677 0.91482 1.25957 1.03336 0.95450 0.95635 1.70123 1.37218 1.37715 1.12961 0.85494 0.80150 0.77776 0.78230 1.18361 1.20916 1.20820 1.21293 0.94666 0.97888 1.00215 1.21285 0.94119 0.98377 1.00825 0.90400 0.91045 0.90812 0.84918 0.86000 0.92628 0.91848 0.91763 0.92312 0.95457 0.83396 0.92858 0.96605 0.91336 0.93311 0.94451 0.95229 0.94170 0.91255 0.99887 0.99825 0.93200 0.85135 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.71 5.88 -19.87 -0.12 -1.82 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.12 -2.40 8.76 22.27 0.20 -2.20 16 5 C -0.09 -1.77 4.78 -19.87 -0.09 -1.87 16 6 C -0.04 -0.83 2.77 -11.54 -0.03 -0.86 16 7 H 0.09 1.75 7.88 -2.38 -0.02 1.73 16 8 C -0.14 -2.52 8.78 71.98 0.63 -1.89 16 9 C 0.07 1.73 4.88 86.31 0.42 2.15 16 10 N -0.68 -18.89 5.71 -513.89 -2.94 -21.83 16 11 C 0.08 2.89 4.65 86.30 0.40 3.29 16 12 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 14 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 15 C 0.04 2.03 4.04 29.85 0.12 2.15 16 16 C -0.51 -28.54 7.65 25.60 0.20 -28.34 16 17 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 18 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 19 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 20 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C -0.12 -2.30 9.67 22.27 0.22 -2.08 16 25 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.12 2.24 7.16 -2.91 -0.02 2.22 16 31 H 0.05 0.96 7.39 -2.38 -0.02 0.94 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.12 6.68 -2.39 -0.02 1.11 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 0.67 7.57 -2.39 -0.02 0.65 16 36 H 0.35 8.75 5.02 -89.70 -0.45 8.30 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 1.98 6.57 -2.38 -0.02 1.96 16 40 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 44 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 45 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.13 2.11 7.95 -2.91 -0.02 2.08 16 49 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -64.37 379.76 4.48 -59.89 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.44 Total: 18.46 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 4.66 Total: -45.65 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.65 Total: -79.52 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.37 4.48 -59.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174416436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.005 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds