Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00381 * 2 1 4 4 C 1.38212 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99912 * 359.74588 * 4 3 2 6 6 C 1.38215 * 119.99870 * 0.51219 * 5 4 3 7 7 C 1.50701 * 119.99765 * 179.76108 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.72679 * 7 6 5 9 9 C 1.53002 * 109.47419 * 299.72760 * 7 6 5 10 10 C 1.52997 * 109.47212 * 59.72624 * 7 6 5 11 11 N 1.46892 * 109.47486 * 174.99922 * 10 7 6 12 12 C 1.46903 * 111.00235 * 180.02562 * 11 10 7 13 13 C 1.53006 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46947 * 300.00313 * 13 12 11 15 15 C 1.53004 * 109.47179 * 59.99800 * 13 12 11 16 16 C 1.52994 * 109.47074 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46854 * 179.97438 * 16 13 12 18 18 H 1.08006 * 120.00192 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00160 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99559 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00289 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47271 * 60.00301 * 21 19 17 23 23 H 1.48501 * 109.47234 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47214 * 299.99994 * 21 19 17 25 25 C 1.38217 * 119.99571 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46664 * 270.01916 * 1 2 3 27 27 H 1.08998 * 109.46739 * 30.01341 * 1 2 3 28 28 H 1.08996 * 109.47636 * 150.01662 * 1 2 3 29 29 H 1.08000 * 119.99539 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99654 * 180.27379 * 5 4 3 32 32 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 33 33 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 35 35 H 1.09000 * 109.47325 * 294.99852 * 10 7 6 36 36 H 1.09008 * 109.47017 * 54.99761 * 10 7 6 37 37 H 1.00905 * 110.99804 * 303.95405 * 11 10 7 38 38 H 1.08991 * 109.46891 * 299.99685 * 12 11 10 39 39 H 1.09001 * 109.47244 * 59.99987 * 12 11 10 40 40 H 1.08999 * 109.47835 * 60.00008 * 14 13 12 41 41 H 1.09003 * 109.47150 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46914 * 299.99606 * 14 13 12 43 43 H 1.09001 * 109.46717 * 60.00033 * 15 13 12 44 44 H 1.08995 * 109.46943 * 180.02562 * 15 13 12 45 45 H 1.09004 * 109.47210 * 300.00451 * 15 13 12 46 46 H 1.08991 * 109.47010 * 299.99707 * 16 13 12 47 47 H 1.09001 * 109.47270 * 60.00098 * 16 13 12 48 48 H 0.97000 * 119.99992 * 179.97438 * 20 19 17 49 49 H 1.07993 * 120.00370 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0019 8 1 3.6256 -3.3307 0.0020 9 6 5.2142 -2.5840 -1.2469 10 6 5.2131 -2.5827 1.2515 11 7 5.8553 -3.9023 1.3143 12 6 6.7088 -4.0164 2.5045 13 6 7.3584 -5.4013 2.5355 14 6 6.2691 -6.4746 2.5843 15 6 8.2083 -5.5943 1.2779 16 6 8.2479 -5.5198 3.7747 17 6 8.8871 -6.8842 3.8055 18 1 8.6801 -7.5955 3.0195 19 6 9.7372 -7.2241 4.8364 20 7 9.9897 -6.3578 5.7932 21 14 10.5302 -8.9150 4.8743 22 1 11.3543 -9.1027 3.6533 23 1 11.3934 -9.0302 6.0771 24 1 9.4729 -9.9566 4.9229 25 6 2.1980 -1.1970 0.0005 26 1 -0.3632 0.0003 1.0277 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0113 32 1 5.9224 -1.7554 -1.2471 33 1 5.7588 -3.5281 -1.2465 34 1 4.5879 -2.5266 -2.1372 35 1 5.9786 -1.8079 1.2078 36 1 4.5975 -2.4356 2.1390 37 1 5.1678 -4.6405 1.2907 38 1 7.4846 -3.2515 2.4698 39 1 6.1033 -3.8794 3.4004 40 1 5.6357 -6.3900 1.7012 41 1 6.7318 -7.4612 2.6068 42 1 5.6636 -6.3371 3.4802 43 1 8.9844 -4.8297 1.2431 44 1 8.6707 -6.5811 1.2998 45 1 7.5750 -5.5096 0.3948 46 1 9.0239 -4.7553 3.7393 47 1 7.6427 -5.3822 4.6708 48 1 10.5874 -6.5970 6.5188 49 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174425038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -13.136665 kcal Electronic energy + Delta-G solvation = -22733.475213 eV Core-core repulsion = 19658.727272 eV Total energy + Delta-G solvation = -3074.747942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84308 -37.77876 -35.92759 -33.34525 -32.44994 -31.80222 -29.67400 -27.08816 -27.05485 -26.32830 -26.13966 -24.52389 -22.87536 -22.24675 -21.85075 -19.61750 -17.78576 -16.77036 -16.21041 -15.78621 -15.38679 -15.18974 -14.68354 -14.29247 -14.11419 -14.00157 -13.60369 -13.28947 -13.22578 -12.94376 -12.66093 -12.46910 -12.35825 -12.09167 -11.96564 -11.95756 -11.81451 -11.40174 -11.22959 -10.90882 -10.84786 -10.79221 -10.76448 -10.63528 -10.45502 -10.22485 -10.10228 -9.65082 -9.01560 -8.93319 -8.82559 -8.68856 -8.29442 -8.03821 -5.94099 -3.94202 1.20171 1.23890 3.35988 3.40558 3.42770 3.58722 4.32339 4.50733 4.58755 4.68502 4.83593 4.91986 5.03021 5.08775 5.22084 5.31085 5.33438 5.38377 5.41511 5.48797 5.57724 5.65814 5.73770 5.80198 5.86497 5.91816 5.95463 6.01003 6.01989 6.12041 6.26884 6.29833 6.35432 6.39821 6.42285 6.54218 6.56488 6.69107 6.81927 6.85601 6.87190 7.23768 7.25709 7.29083 7.43473 7.70224 7.74158 7.88547 8.06278 8.50677 9.10998 9.68343 11.17560 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.002515 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.664968 B =11132.603331 C =11177.591796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.066 4.066 7 C -0.050 4.050 8 H 0.074 0.926 9 C -0.133 4.133 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.033 3.967 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.119 4.119 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.337 0.663 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.259 0.741 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 13.117 -13.221 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.136 4.136 6 C -0.067 4.067 7 C -0.069 4.069 8 H 0.093 0.907 9 C -0.190 4.190 10 C -0.063 4.063 11 N -0.316 5.316 12 C -0.058 4.058 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.137 4.137 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.069 0.931 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.065 13.317 -13.467 24.835 hybrid contribution -0.138 -0.870 0.994 1.328 sum -16.203 12.446 -12.473 23.937 Atomic orbital electron populations 1.20784 0.91372 1.02622 1.02284 1.19896 0.95940 0.93214 0.99729 1.20987 0.94314 0.97341 1.02097 1.21127 0.94268 0.98002 0.99929 1.21033 1.00052 0.91899 1.00649 1.19916 0.93451 0.95102 0.98192 1.20163 0.96609 0.93668 0.96446 0.90744 1.21722 0.98864 1.03166 0.95281 1.21970 0.96177 0.93001 0.95110 1.60574 1.25345 1.03090 1.42573 1.22096 0.95456 0.99222 0.89034 1.20618 0.95513 0.91288 0.98381 1.21768 0.97661 1.00524 0.98657 1.21594 0.98408 1.01230 0.96036 1.19121 0.93606 0.96995 0.90691 1.21202 1.26198 0.99353 1.07720 0.92357 1.25023 0.96890 0.96869 0.95868 1.69961 1.36992 1.34762 1.12080 0.86720 0.79378 0.84968 0.77296 1.20313 1.21469 1.20380 1.20956 0.93558 0.97497 1.01676 0.91239 0.91688 0.91600 0.86434 0.86198 0.85999 0.92871 0.90732 0.93582 0.91109 0.95709 0.84442 0.91658 0.95988 0.94792 0.91754 0.94173 0.94223 0.92765 0.93878 0.96704 0.96964 0.93131 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.12 -1.23 8.76 -39.58 -0.35 -1.57 16 6 C -0.07 -0.71 4.78 -104.62 -0.50 -1.21 16 7 C -0.05 -0.54 2.70 -91.77 -0.25 -0.78 16 8 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 9 C -0.13 -1.41 8.90 37.16 0.33 -1.08 16 10 C 0.07 0.84 4.81 -3.83 -0.02 0.82 16 11 N -0.68 -9.76 5.17 -113.78 -0.59 -10.35 16 12 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 13 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 14 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 15 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 16 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 17 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 18 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.12 -1.20 9.33 -39.58 -0.37 -1.57 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.12 1.19 7.16 -52.48 -0.38 0.81 16 32 H 0.05 0.56 7.40 -51.93 -0.38 0.18 16 33 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 36 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 37 H 0.34 4.62 6.77 -39.29 -0.27 4.35 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 41 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 45 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -29.47 382.02 -10.29 -39.76 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.99 Total: 0.82 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -2.18 Total: -26.38 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.15 Total: -36.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.47 -10.29 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174425038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.625 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds