Wall clock time and date at job start Tue Mar 31 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00381 * 2 1 4 4 C 1.38212 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99912 * 359.74588 * 4 3 2 6 6 C 1.38215 * 119.99870 * 0.51219 * 5 4 3 7 7 C 1.50701 * 119.99765 * 179.76108 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.72679 * 7 6 5 9 9 C 1.53002 * 109.47419 * 299.72760 * 7 6 5 10 10 C 1.52997 * 109.47212 * 59.72624 * 7 6 5 11 11 N 1.46892 * 109.47486 * 174.99922 * 10 7 6 12 12 C 1.46903 * 111.00235 * 180.02562 * 11 10 7 13 13 C 1.53006 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46947 * 300.00313 * 13 12 11 15 15 C 1.53004 * 109.47179 * 59.99800 * 13 12 11 16 16 C 1.52994 * 109.47074 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46854 * 179.97438 * 16 13 12 18 18 H 1.08006 * 120.00192 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00160 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99559 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00289 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47271 * 60.00301 * 21 19 17 23 23 H 1.48501 * 109.47234 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47214 * 299.99994 * 21 19 17 25 25 C 1.38217 * 119.99571 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46664 * 270.01916 * 1 2 3 27 27 H 1.08998 * 109.46739 * 30.01341 * 1 2 3 28 28 H 1.08996 * 109.47636 * 150.01662 * 1 2 3 29 29 H 1.08000 * 119.99539 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99654 * 180.27379 * 5 4 3 32 32 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 33 33 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 35 35 H 1.09000 * 109.47325 * 294.99852 * 10 7 6 36 36 H 1.09008 * 109.47017 * 54.99761 * 10 7 6 37 37 H 1.00905 * 110.99804 * 303.95405 * 11 10 7 38 38 H 1.08991 * 109.46891 * 299.99685 * 12 11 10 39 39 H 1.09001 * 109.47244 * 59.99987 * 12 11 10 40 40 H 1.08999 * 109.47835 * 60.00008 * 14 13 12 41 41 H 1.09003 * 109.47150 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46914 * 299.99606 * 14 13 12 43 43 H 1.09001 * 109.46717 * 60.00033 * 15 13 12 44 44 H 1.08995 * 109.46943 * 180.02562 * 15 13 12 45 45 H 1.09004 * 109.47210 * 300.00451 * 15 13 12 46 46 H 1.08991 * 109.47010 * 299.99707 * 16 13 12 47 47 H 1.09001 * 109.47270 * 60.00098 * 16 13 12 48 48 H 0.97000 * 119.99992 * 179.97438 * 20 19 17 49 49 H 1.07993 * 120.00370 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0019 8 1 3.6256 -3.3307 0.0020 9 6 5.2142 -2.5840 -1.2469 10 6 5.2131 -2.5827 1.2515 11 7 5.8553 -3.9023 1.3143 12 6 6.7088 -4.0164 2.5045 13 6 7.3584 -5.4013 2.5355 14 6 6.2691 -6.4746 2.5843 15 6 8.2083 -5.5943 1.2779 16 6 8.2479 -5.5198 3.7747 17 6 8.8871 -6.8842 3.8055 18 1 8.6801 -7.5955 3.0195 19 6 9.7372 -7.2241 4.8364 20 7 9.9897 -6.3578 5.7932 21 14 10.5302 -8.9150 4.8743 22 1 11.3543 -9.1027 3.6533 23 1 11.3934 -9.0302 6.0771 24 1 9.4729 -9.9566 4.9229 25 6 2.1980 -1.1970 0.0005 26 1 -0.3632 0.0003 1.0277 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0113 32 1 5.9224 -1.7554 -1.2471 33 1 5.7588 -3.5281 -1.2465 34 1 4.5879 -2.5266 -2.1372 35 1 5.9786 -1.8079 1.2078 36 1 4.5975 -2.4356 2.1390 37 1 5.1678 -4.6405 1.2907 38 1 7.4846 -3.2515 2.4698 39 1 6.1033 -3.8794 3.4004 40 1 5.6357 -6.3900 1.7012 41 1 6.7318 -7.4612 2.6068 42 1 5.6636 -6.3371 3.4802 43 1 8.9844 -4.8297 1.2431 44 1 8.6707 -6.5811 1.2998 45 1 7.5750 -5.5096 0.3948 46 1 9.0239 -4.7553 3.7393 47 1 7.6427 -5.3822 4.6708 48 1 10.5874 -6.5970 6.5188 49 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174425038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:07 Heat of formation + Delta-G solvation = -26.901408 kcal Electronic energy + Delta-G solvation = -22734.072097 eV Core-core repulsion = 19658.727272 eV Total energy + Delta-G solvation = -3075.344826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59686 -39.21378 -37.06830 -34.87040 -33.73013 -32.93652 -30.51935 -29.02114 -27.87889 -27.67590 -27.43981 -25.94750 -24.30190 -23.13647 -22.95737 -20.48594 -19.39112 -18.32436 -17.50697 -16.72761 -16.63949 -16.41787 -16.03212 -15.59437 -15.20946 -14.97304 -14.67824 -14.46895 -14.42307 -13.92584 -13.88019 -13.86067 -13.60621 -13.27829 -13.04341 -12.99741 -12.76389 -12.72350 -12.68374 -12.49520 -12.24036 -12.14642 -12.10103 -12.05865 -11.87792 -11.57023 -11.49738 -11.35127 -10.84889 -10.71694 -10.49568 -9.66863 -9.44022 -9.27322 -8.13394 -6.20552 0.47137 0.51503 1.41155 1.43604 1.50828 2.44173 2.84966 3.20288 3.26712 3.80506 3.93021 4.06814 4.11941 4.18485 4.22483 4.30615 4.34121 4.40657 4.46152 4.56478 4.62353 4.74019 4.76721 4.81478 4.83904 4.86233 4.91443 4.97812 5.00798 5.09894 5.13966 5.17783 5.22841 5.23612 5.28217 5.33501 5.47220 5.52660 5.55039 5.60002 5.63298 5.66973 5.72279 5.79168 5.88613 5.93449 6.08629 6.17075 6.37321 6.55554 6.94489 7.46657 8.98839 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.002515 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.664968 B =11132.603331 C =11177.591796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.134 4.134 6 C -0.079 4.079 7 C -0.040 4.040 8 H 0.082 0.918 9 C -0.129 4.129 10 C 0.071 3.929 11 N -0.676 5.676 12 C 0.083 3.917 13 C -0.054 4.054 14 C -0.122 4.122 15 C -0.106 4.106 16 C 0.039 3.961 17 C -0.513 4.513 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.267 1.267 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.344 0.656 38 H 0.054 0.946 39 H 0.013 0.987 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.038 0.962 45 H 0.070 0.930 46 H -0.017 1.017 47 H -0.018 1.018 48 H 0.259 0.741 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.237 12.801 -14.889 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.079 4.079 7 C -0.059 4.059 8 H 0.100 0.900 9 C -0.186 4.186 10 C -0.058 4.058 11 N -0.308 5.308 12 C -0.046 4.046 13 C -0.054 4.054 14 C -0.179 4.179 15 C -0.163 4.163 16 C 0.001 3.999 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.192 1.192 25 C -0.149 4.149 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.001 0.999 47 H 0.001 0.999 48 H 0.068 0.932 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.629 12.997 -15.157 26.636 hybrid contribution 0.303 -0.678 1.510 1.683 sum -17.326 12.319 -13.647 25.262 Atomic orbital electron populations 1.20824 0.89664 1.03575 1.02868 1.20241 0.97351 0.93032 0.98959 1.21303 0.94379 0.98251 1.01468 1.21394 0.94776 0.98409 0.99517 1.21164 1.00259 0.92388 1.01345 1.19948 0.93868 0.94965 0.99130 1.20051 0.96304 0.94243 0.95296 0.90015 1.21671 0.98810 1.02536 0.95560 1.21959 0.96127 0.91681 0.96013 1.60501 1.25585 1.04317 1.40362 1.21795 0.95534 0.97173 0.90124 1.20476 0.95406 0.93518 0.95995 1.21686 0.97328 0.98750 1.00182 1.21500 0.98357 0.99885 0.96605 1.19017 0.93211 0.95393 0.92270 1.21589 1.25779 1.00157 1.07619 0.91514 1.25949 0.97744 1.00978 0.95609 1.70111 1.37995 1.37002 1.12916 0.85614 0.78557 0.80123 0.77453 1.19290 1.21425 1.19223 1.21163 0.93478 0.98389 1.01884 0.90734 0.90498 0.90958 0.84498 0.84607 0.86021 0.93155 0.91531 0.92770 0.91605 0.96274 0.83636 0.92740 0.96847 0.91187 0.93403 0.94657 0.95236 0.94287 0.91141 0.99875 0.99945 0.93192 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.10 -1.62 5.88 -19.87 -0.12 -1.74 16 3 C -0.14 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 5 C -0.13 -2.66 8.76 22.27 0.20 -2.46 16 6 C -0.08 -1.59 4.78 -19.87 -0.09 -1.68 16 7 C -0.04 -0.80 2.70 -11.54 -0.03 -0.83 16 8 H 0.08 1.52 7.88 -2.39 -0.02 1.50 16 9 C -0.13 -2.52 8.90 71.98 0.64 -1.88 16 10 C 0.07 1.72 4.81 86.30 0.42 2.13 16 11 N -0.68 -18.29 5.17 -513.89 -2.66 -20.94 16 12 C 0.08 2.88 4.65 86.30 0.40 3.29 16 13 C -0.05 -2.13 0.60 -52.18 -0.03 -2.17 16 14 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 15 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 16 C 0.04 2.03 4.04 29.85 0.12 2.15 16 17 C -0.51 -28.62 7.65 25.60 0.20 -28.42 16 18 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 21 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.13 -2.45 9.33 22.27 0.21 -2.24 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 30 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.12 2.32 7.16 -2.91 -0.02 2.30 16 32 H 0.05 1.00 7.40 -2.39 -0.02 0.99 16 33 H 0.07 1.41 7.75 -2.39 -0.02 1.39 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16 36 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.34 8.58 6.77 -89.69 -0.61 7.97 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 40 H 0.07 2.00 6.57 -2.39 -0.02 1.99 16 41 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 45 H 0.07 2.27 7.60 -2.38 -0.02 2.26 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 47 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.13 2.05 7.95 -2.91 -0.02 2.03 16 Total: -1.00 -64.11 382.02 4.60 -59.51 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.28 Total: 18.00 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 4.66 Total: -45.57 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.37 Total: -78.69 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.11 4.60 -59.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174425038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds