Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.52998 * 109.47184 * 119.99934 * 2 1 3 5 5 C 1.50699 * 109.47049 * 175.00103 * 4 2 1 6 6 C 1.38228 * 120.00224 * 90.00117 * 5 4 2 7 7 C 1.38232 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00055 * 359.96146 * 7 6 5 9 9 C 1.50695 * 120.00469 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46914 * 340.00015 * 9 8 7 11 11 C 1.53000 * 109.47212 * 99.99633 * 9 8 7 12 12 N 1.46905 * 109.47374 * 219.99927 * 9 8 7 13 13 C 1.46902 * 110.99800 * 154.99628 * 12 9 8 14 14 C 1.53006 * 109.46626 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00347 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99775 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46867 * 90.00546 * 20 18 16 22 22 H 1.48501 * 109.47216 * 210.00404 * 20 18 16 23 23 H 1.48499 * 109.47135 * 330.00745 * 20 18 16 24 24 C 1.38243 * 119.99713 * 0.27191 * 8 7 6 25 25 C 1.38230 * 119.99886 * 359.51460 * 24 8 7 26 26 H 1.09002 * 109.46998 * 300.00023 * 1 2 3 27 27 H 1.09003 * 109.47407 * 59.99600 * 1 2 3 28 28 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46998 * 239.99976 * 2 1 3 30 30 H 1.08997 * 109.47439 * 299.99466 * 3 2 1 31 31 H 1.09002 * 109.47340 * 60.00186 * 3 2 1 32 32 H 1.09008 * 109.46726 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46762 * 55.00109 * 4 2 1 34 34 H 1.09000 * 109.47075 * 295.00450 * 4 2 1 35 35 H 1.08000 * 119.99725 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00317 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.46808 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47129 * 300.00287 * 11 9 8 39 39 H 1.08996 * 109.47051 * 60.00651 * 11 9 8 40 40 H 1.00898 * 110.99743 * 31.04677 * 12 9 8 41 41 H 1.09000 * 109.47263 * 60.00269 * 13 12 9 42 42 H 1.09001 * 109.47582 * 299.99548 * 13 12 9 43 43 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 44 44 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 45 45 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 46 46 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 47 47 H 0.96991 * 119.99882 * 179.97438 * 19 18 16 48 48 H 1.07997 * 119.99776 * 179.73094 * 24 8 7 49 49 H 1.07999 * 120.00418 * 180.25529 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1889 6 6 4.3291 0.1712 1.7273 7 6 5.7068 0.0718 1.6724 8 6 6.2973 -1.0286 1.0797 9 6 7.7991 -1.1368 1.0193 10 1 8.2402 -0.1487 1.1510 11 6 8.2887 -2.0661 2.1318 12 7 8.1988 -1.6816 -0.2851 13 6 9.5664 -1.2710 -0.6304 14 6 9.9463 -1.8568 -1.9919 15 6 11.3704 -1.4287 -2.3517 16 6 11.7444 -2.0052 -3.6930 17 1 11.0369 -2.6154 -4.2347 18 6 12.9897 -1.7535 -4.2286 19 7 13.3159 -2.2562 -5.3993 20 14 14.2131 -0.6974 -3.2919 21 1 15.0404 -1.5610 -2.4116 22 1 15.0919 0.0140 -4.2547 23 1 13.4797 0.2942 -2.4649 24 6 5.5100 -2.0269 0.5369 25 6 4.1324 -1.9296 0.5958 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 3.8678 1.0306 2.1909 36 1 6.3218 0.8538 2.0928 37 1 9.3751 -2.1439 2.0883 38 1 7.9922 -1.6618 3.0997 39 1 7.8478 -3.0541 2.0002 40 1 7.5469 -1.4096 -1.0056 41 1 10.2582 -1.6374 0.1281 42 1 9.6189 -0.1832 -0.6751 43 1 9.8938 -2.9446 -1.9467 44 1 9.2545 -1.4909 -2.7506 45 1 11.4224 -0.3410 -2.3970 46 1 12.0624 -1.7944 -1.5931 47 1 14.1918 -2.0788 -5.7762 48 1 5.9714 -2.8845 0.0700 49 1 3.5173 -2.7115 0.1754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178531557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -16.625432 kcal Electronic energy + Delta-G solvation = -22211.454587 eV Core-core repulsion = 19136.555361 eV Total energy + Delta-G solvation = -3074.899226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96887 -37.51653 -36.02394 -34.00657 -32.31185 -31.13132 -30.78372 -29.38844 -27.47414 -26.74512 -26.09916 -22.96367 -22.91039 -21.73487 -20.46476 -20.22424 -19.87116 -16.89246 -16.46982 -16.07870 -15.51231 -15.14109 -14.88150 -14.64497 -14.32671 -14.10958 -13.84199 -13.68613 -13.44795 -13.32290 -12.70860 -12.57841 -12.48835 -12.42162 -12.28406 -12.02014 -11.92834 -11.69062 -11.48568 -11.27020 -11.13045 -11.06407 -10.91831 -10.88527 -10.76466 -10.63572 -9.92072 -9.70230 -9.56058 -9.14519 -8.98981 -8.60460 -8.50953 -8.24721 -6.01259 -3.98810 1.20642 1.32321 3.32454 3.39486 3.43350 3.61930 4.30404 4.44052 4.47689 4.51974 4.64972 4.68004 4.80255 4.92658 5.01937 5.15671 5.29446 5.30758 5.32631 5.33620 5.38320 5.41959 5.49741 5.53696 5.58508 5.66652 5.67887 5.74425 5.78497 5.82106 5.87460 5.96750 5.99276 6.01788 6.03732 6.18147 6.28286 6.33205 6.47948 6.50986 6.59237 6.65697 6.91610 6.95098 7.25946 7.37852 7.47088 7.60085 7.83447 8.58196 9.04432 9.61432 11.12342 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.002466 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.765704 B =11352.062498 C =11885.386823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.075 4.075 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.089 4.089 9 C 0.121 3.879 10 H 0.048 0.952 11 C -0.133 4.133 12 N -0.683 5.683 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.096 4.096 25 C -0.119 4.119 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.341 0.659 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.132 0.868 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 5.380 17.190 30.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.089 4.089 9 C 0.012 3.988 10 H 0.066 0.934 11 C -0.191 4.191 12 N -0.315 5.315 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.114 4.114 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.150 0.850 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.885 4.770 17.318 29.886 hybrid contribution 0.688 1.502 0.126 1.657 sum -23.196 6.272 17.444 29.694 Atomic orbital electron populations 1.21855 0.95155 1.01701 1.01778 1.21087 0.95350 0.96586 0.98018 1.21922 1.01793 0.95658 1.01432 1.20672 0.91203 1.01090 0.98298 1.19834 0.95393 0.94680 0.98485 1.20935 0.93364 0.98573 1.00711 1.21019 0.94777 0.97625 0.99838 1.19995 0.95273 0.94764 0.98902 1.20444 0.89938 0.96838 0.91613 0.93429 1.21764 1.01343 0.99813 0.96215 1.60671 1.04437 1.63276 1.03103 1.22205 0.88739 0.97034 0.99227 1.21436 0.98582 1.00711 0.92950 1.19543 0.92209 0.96271 0.97065 1.21156 1.00415 1.31781 1.02232 0.91029 1.25050 0.98180 0.95621 0.94814 1.69918 1.21476 1.45556 1.17455 0.86763 0.81311 0.81205 0.79891 1.20306 1.21447 1.19112 1.21104 0.93070 0.98851 0.98418 1.21052 0.94848 0.97853 0.99999 0.92750 0.92617 0.92693 0.90999 0.92876 0.92897 0.92029 0.91114 0.91217 0.86429 0.86408 0.92264 0.92937 0.91890 0.84075 0.91425 0.95802 0.91940 0.93072 0.96893 0.97066 0.92800 0.84995 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.65 2.91 -90.62 -0.26 -0.91 16 3 C -0.15 -1.09 8.76 37.16 0.33 -0.77 16 4 C -0.08 -0.54 4.84 -27.88 -0.13 -0.68 16 5 C -0.08 -0.77 4.71 -104.62 -0.49 -1.26 16 6 C -0.12 -1.10 7.96 -39.59 -0.32 -1.41 16 7 C -0.11 -1.18 9.67 -39.58 -0.38 -1.56 16 8 C -0.09 -1.01 4.72 -104.62 -0.49 -1.50 16 9 C 0.12 1.49 2.82 -68.86 -0.19 1.29 16 10 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 11 C -0.13 -1.54 9.39 37.16 0.35 -1.19 16 12 N -0.68 -9.67 5.69 -107.94 -0.61 -10.29 16 13 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 14 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 15 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 20 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 24 C -0.10 -1.07 9.00 -39.58 -0.36 -1.42 16 25 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.52 6.27 -51.92 -0.33 0.19 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.91 8.04 -52.49 -0.42 0.48 16 36 H 0.12 1.07 8.04 -52.49 -0.42 0.65 16 37 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.34 4.74 7.98 -39.29 -0.31 4.43 16 41 H 0.07 1.11 7.44 -51.93 -0.39 0.73 16 42 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 46 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.13 1.50 7.71 -52.49 -0.40 1.10 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -30.63 386.98 -10.71 -41.34 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -9.32 Total: 0.07 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.71 Total: -26.78 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.16 Total: -37.89 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.63 -10.71 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178531557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.712 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds