Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47198 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.38228 * 120.00224 * 90.00117 * 5 4 3 7 7 C 1.38232 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00055 * 359.96146 * 7 6 5 9 9 C 1.50695 * 120.00469 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46914 * 340.00015 * 9 8 7 11 11 C 1.53000 * 109.47212 * 99.99633 * 9 8 7 12 12 N 1.46905 * 109.47374 * 219.99927 * 9 8 7 13 13 C 1.46902 * 110.99800 * 154.99628 * 12 9 8 14 14 C 1.53006 * 109.46626 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99480 * 20 18 16 22 22 H 1.48494 * 109.47288 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99424 * 20 18 16 24 24 C 1.38243 * 119.99713 * 0.27191 * 8 7 6 25 25 C 1.38230 * 119.99886 * 359.51460 * 24 8 7 26 26 H 1.09000 * 109.47075 * 59.99440 * 1 2 3 27 27 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47055 * 300.00229 * 1 2 3 29 29 H 1.08994 * 109.46986 * 240.00492 * 2 1 3 30 30 H 1.09001 * 109.47148 * 120.00009 * 2 1 3 31 31 H 1.09007 * 109.46745 * 60.00167 * 3 2 1 32 32 H 1.08999 * 109.46879 * 300.00561 * 3 2 1 33 33 H 1.09001 * 109.46762 * 60.00219 * 4 3 2 34 34 H 1.09000 * 109.47075 * 300.00560 * 4 3 2 35 35 H 1.08000 * 119.99725 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00317 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47129 * 300.00287 * 11 9 8 38 38 H 1.08996 * 109.47051 * 60.00651 * 11 9 8 39 39 H 1.09002 * 109.46808 * 180.02562 * 11 9 8 40 40 H 1.00898 * 110.99743 * 31.04677 * 12 9 8 41 41 H 1.09000 * 109.47263 * 60.00269 * 13 12 9 42 42 H 1.09001 * 109.47582 * 299.99548 * 13 12 9 43 43 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 44 44 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 45 45 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 46 46 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 47 47 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 48 48 H 1.07997 * 119.99776 * 179.73094 * 24 8 7 49 49 H 1.07999 * 120.00418 * 180.25529 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3032 3.5143 1.1973 7 6 4.7645 4.8174 1.1979 8 6 4.9956 5.4693 0.0011 9 6 5.4979 6.8901 0.0016 10 1 5.2871 7.3496 0.9673 11 6 7.0074 6.8975 -0.2479 12 7 4.8225 7.6488 -1.0596 13 6 4.8030 9.0846 -0.7495 14 6 4.0937 9.8398 -1.8754 15 6 4.0729 11.3351 -1.5521 16 6 3.3737 12.0790 -2.6607 17 1 2.9828 11.5391 -3.5105 18 6 3.2329 13.4487 -2.5900 19 7 3.7084 14.1061 -1.5549 20 14 2.3656 14.3707 -3.9638 21 1 0.9723 13.8729 -4.0913 22 1 2.3454 15.8220 -3.6502 23 1 3.0890 14.1500 -5.2417 24 6 4.7601 4.8200 -1.1964 25 6 4.3030 3.5154 -1.1969 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 4.1233 3.0048 2.1324 36 1 4.9445 5.3261 2.1335 37 1 7.5086 6.3346 0.5396 38 1 7.2183 6.4380 -1.2135 39 1 7.3708 7.9252 -0.2470 40 1 3.8886 7.2998 -1.2152 41 1 5.8257 9.4499 -0.6556 42 1 4.2716 9.2467 0.1882 43 1 4.6254 9.6776 -2.8129 44 1 3.0710 9.4746 -1.9698 45 1 3.5409 11.4969 -0.6147 46 1 5.0954 11.7006 -1.4574 47 1 3.6091 15.0697 -1.5049 48 1 4.9365 5.3308 -2.1314 49 1 4.1229 3.0067 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = -23.827600 kcal Electronic energy + Delta-G solvation = -21808.512783 eV Core-core repulsion = 18733.301247 eV Total energy + Delta-G solvation = -3075.211535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83886 -37.21464 -35.79971 -34.01211 -32.57155 -31.35569 -30.99330 -29.43205 -28.11590 -26.00788 -24.58089 -22.94972 -22.68814 -21.67316 -21.23403 -20.30682 -19.88264 -16.64741 -16.25434 -16.08132 -15.53928 -15.30486 -14.85214 -14.48602 -14.40003 -14.03586 -13.98165 -13.62153 -13.50822 -13.14407 -13.04238 -12.58875 -12.48941 -12.16994 -12.10317 -11.82603 -11.64946 -11.55350 -11.37842 -11.32398 -11.14850 -11.01136 -10.83523 -10.79519 -10.63579 -10.50429 -10.47039 -9.65845 -9.31337 -9.04456 -8.97647 -8.58150 -8.31348 -8.16470 -5.96596 -3.98621 1.23235 1.34933 3.35803 3.39703 3.42588 3.64798 4.36401 4.41249 4.50650 4.55627 4.68918 4.75203 4.78645 4.91952 4.97773 5.05537 5.30874 5.35710 5.36013 5.38972 5.40237 5.43718 5.46333 5.49972 5.63778 5.64920 5.77310 5.80594 5.84083 5.89539 5.91016 5.95844 6.00555 6.04380 6.05296 6.28927 6.34682 6.39965 6.52228 6.55062 6.75715 6.83529 6.94431 7.17169 7.39029 7.66268 7.71756 7.87203 8.03897 8.47220 9.08340 9.65045 11.14800 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.002317 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.474555 B =12083.244493 C =13143.223799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.079 4.079 5 C -0.088 4.088 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.088 4.088 9 C 0.121 3.879 10 H 0.048 0.952 11 C -0.133 4.133 12 N -0.684 5.684 13 C 0.059 3.941 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.096 4.096 25 C -0.119 4.119 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.339 0.661 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.132 0.868 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -28.189 5.882 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.088 4.088 9 C 0.011 3.989 10 H 0.066 0.934 11 C -0.191 4.191 12 N -0.316 5.316 13 C -0.069 4.069 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.115 4.115 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.150 0.850 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.108 -27.953 5.567 28.523 hybrid contribution -1.142 0.718 0.065 1.350 sum -0.034 -27.235 5.632 27.812 Atomic orbital electron populations 1.21780 0.95851 1.01520 1.01986 1.21550 0.95939 0.96843 1.01919 1.21616 0.94358 0.96673 1.02601 1.20602 0.95641 0.92765 1.02644 1.19859 0.99482 0.96136 0.93289 1.20930 1.00620 0.94850 0.97387 1.21030 0.99648 0.94914 0.97543 1.20027 0.99417 0.96079 0.93326 1.20448 0.95299 0.89149 0.93978 0.93372 1.21763 0.93671 1.02023 1.01675 1.60706 1.23761 1.03889 1.43214 1.22182 1.00862 0.85982 0.97922 1.21618 0.98224 0.97889 0.96718 1.19061 0.97120 0.88578 0.96784 1.21224 1.36616 0.92023 1.05832 0.92736 1.25036 0.95836 0.97843 0.95867 1.69957 1.46326 1.07971 1.29371 0.86650 0.80177 0.78620 0.82504 1.20284 1.21334 1.20223 1.21109 0.97873 0.94114 0.98374 1.21046 1.00304 0.95023 0.97376 0.92655 0.92850 0.92732 0.92044 0.92109 0.91842 0.91723 0.91152 0.91260 0.86439 0.86319 0.92960 0.91969 0.92160 0.84267 0.91401 0.95774 0.92549 0.93711 0.96847 0.96583 0.93008 0.84993 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.91 16 3 C -0.11 -0.82 5.20 -26.73 -0.14 -0.96 16 4 C -0.08 -0.58 5.34 -27.88 -0.15 -0.73 16 5 C -0.09 -0.84 5.13 -104.62 -0.54 -1.37 16 6 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 7 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 8 C -0.09 -1.05 4.72 -104.62 -0.49 -1.54 16 9 C 0.12 1.57 2.82 -68.86 -0.19 1.37 16 10 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 11 C -0.13 -1.63 9.39 37.16 0.35 -1.28 16 12 N -0.68 -10.20 5.69 -107.94 -0.61 -10.82 16 13 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 14 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 C -0.10 -1.11 9.00 -39.58 -0.36 -1.47 16 25 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 40 H 0.34 4.94 7.98 -39.29 -0.31 4.63 16 41 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 42 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.13 1.55 7.71 -52.49 -0.40 1.14 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -30.22 395.31 -11.57 -41.79 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -9.45 Total: -0.32 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -3.18 Total: -26.97 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.12 Total: -37.46 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.22 -11.57 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.964 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds