Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47198 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.38228 * 120.00224 * 90.00117 * 5 4 3 7 7 C 1.38232 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00055 * 359.96146 * 7 6 5 9 9 C 1.50695 * 120.00469 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46914 * 340.00015 * 9 8 7 11 11 C 1.53000 * 109.47212 * 99.99633 * 9 8 7 12 12 N 1.46905 * 109.47374 * 219.99927 * 9 8 7 13 13 C 1.46902 * 110.99800 * 154.99628 * 12 9 8 14 14 C 1.53006 * 109.46626 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99480 * 20 18 16 22 22 H 1.48494 * 109.47288 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99424 * 20 18 16 24 24 C 1.38243 * 119.99713 * 0.27191 * 8 7 6 25 25 C 1.38230 * 119.99886 * 359.51460 * 24 8 7 26 26 H 1.09000 * 109.47075 * 59.99440 * 1 2 3 27 27 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47055 * 300.00229 * 1 2 3 29 29 H 1.08994 * 109.46986 * 240.00492 * 2 1 3 30 30 H 1.09001 * 109.47148 * 120.00009 * 2 1 3 31 31 H 1.09007 * 109.46745 * 60.00167 * 3 2 1 32 32 H 1.08999 * 109.46879 * 300.00561 * 3 2 1 33 33 H 1.09001 * 109.46762 * 60.00219 * 4 3 2 34 34 H 1.09000 * 109.47075 * 300.00560 * 4 3 2 35 35 H 1.08000 * 119.99725 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00317 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47129 * 300.00287 * 11 9 8 38 38 H 1.08996 * 109.47051 * 60.00651 * 11 9 8 39 39 H 1.09002 * 109.46808 * 180.02562 * 11 9 8 40 40 H 1.00898 * 110.99743 * 31.04677 * 12 9 8 41 41 H 1.09000 * 109.47263 * 60.00269 * 13 12 9 42 42 H 1.09001 * 109.47582 * 299.99548 * 13 12 9 43 43 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 44 44 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 45 45 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 46 46 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 47 47 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 48 48 H 1.07997 * 119.99776 * 179.73094 * 24 8 7 49 49 H 1.07999 * 120.00418 * 180.25529 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3032 3.5143 1.1973 7 6 4.7645 4.8174 1.1979 8 6 4.9956 5.4693 0.0011 9 6 5.4979 6.8901 0.0016 10 1 5.2871 7.3496 0.9673 11 6 7.0074 6.8975 -0.2479 12 7 4.8225 7.6488 -1.0596 13 6 4.8030 9.0846 -0.7495 14 6 4.0937 9.8398 -1.8754 15 6 4.0729 11.3351 -1.5521 16 6 3.3737 12.0790 -2.6607 17 1 2.9828 11.5391 -3.5105 18 6 3.2329 13.4487 -2.5900 19 7 3.7084 14.1061 -1.5549 20 14 2.3656 14.3707 -3.9638 21 1 0.9723 13.8729 -4.0913 22 1 2.3454 15.8220 -3.6502 23 1 3.0890 14.1500 -5.2417 24 6 4.7601 4.8200 -1.1964 25 6 4.3030 3.5154 -1.1969 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 4.1233 3.0048 2.1324 36 1 4.9445 5.3261 2.1335 37 1 7.5086 6.3346 0.5396 38 1 7.2183 6.4380 -1.2135 39 1 7.3708 7.9252 -0.2470 40 1 3.8886 7.2998 -1.2152 41 1 5.8257 9.4499 -0.6556 42 1 4.2716 9.2467 0.1882 43 1 4.6254 9.6776 -2.8129 44 1 3.0710 9.4746 -1.9698 45 1 3.5409 11.4969 -0.6147 46 1 5.0954 11.7006 -1.4574 47 1 3.6091 15.0697 -1.5049 48 1 4.9365 5.3308 -2.1314 49 1 4.1229 3.0067 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178641335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -37.621858 kcal Electronic energy + Delta-G solvation = -21809.110947 eV Core-core repulsion = 18733.301247 eV Total energy + Delta-G solvation = -3075.809699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67245 -38.28183 -36.64272 -35.67605 -34.08374 -32.54468 -31.78980 -30.79314 -28.87105 -27.80165 -25.44192 -24.36378 -23.65367 -22.57771 -21.94651 -21.85192 -20.93995 -18.50144 -17.54922 -16.96583 -16.54950 -16.45295 -16.06925 -15.91384 -15.21120 -15.12985 -14.96393 -14.73378 -14.35381 -14.24774 -13.83919 -13.79560 -13.67260 -13.47239 -13.25829 -13.13579 -12.85189 -12.74610 -12.47657 -12.40665 -12.23865 -12.17543 -11.98157 -11.88625 -11.76473 -11.52785 -11.46464 -11.37487 -11.34660 -11.07945 -10.55268 -9.78332 -9.41845 -9.39806 -8.20239 -6.31451 0.41685 0.54235 1.39570 1.43087 1.50999 2.40815 2.83251 3.12479 3.19821 3.69033 3.87948 3.94413 4.11986 4.17171 4.22880 4.24231 4.28336 4.34520 4.38701 4.49355 4.54683 4.63843 4.69862 4.73257 4.79888 4.81904 4.84813 4.93725 4.98294 4.98888 5.01127 5.12188 5.15420 5.21412 5.22321 5.24155 5.31997 5.34730 5.40058 5.50862 5.51526 5.54168 5.68650 5.74446 5.77311 5.85239 6.09105 6.16114 6.27038 6.44890 6.85041 7.37530 8.91435 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.002317 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.474555 B =12083.244493 C =13143.223799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.076 4.076 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.101 4.101 9 C 0.123 3.877 10 H 0.046 0.954 11 C -0.130 4.130 12 N -0.681 5.681 13 C 0.073 3.927 14 C -0.091 4.091 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.107 4.107 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.342 0.658 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.048 0.952 45 H -0.010 1.010 46 H -0.008 1.008 47 H 0.264 0.736 48 H 0.125 0.875 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -29.972 5.483 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.113 4.113 5 C -0.087 4.087 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.102 4.102 9 C 0.013 3.987 10 H 0.064 0.936 11 C -0.188 4.188 12 N -0.313 5.313 13 C -0.056 4.056 14 C -0.129 4.129 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.126 4.126 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.008 0.992 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.143 0.857 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.527 -29.760 5.167 30.210 hybrid contribution -0.954 1.213 0.231 1.560 sum -0.426 -28.547 5.398 29.056 Atomic orbital electron populations 1.21797 0.95953 1.01910 1.01667 1.21532 0.95841 0.96119 1.02498 1.21569 0.94212 0.97281 1.01848 1.20624 0.95588 0.91424 1.03644 1.20155 0.98490 0.97157 0.92929 1.21203 0.99935 0.94530 0.98426 1.21204 0.99656 0.95525 0.97520 1.19935 1.00746 0.95451 0.94045 1.20453 0.95476 0.89724 0.93001 0.93617 1.21735 0.93314 1.01588 1.02131 1.60637 1.24125 1.02321 1.44202 1.21876 0.99966 0.87507 0.96253 1.21365 0.98956 0.94833 0.97786 1.18966 0.94980 0.91983 0.95293 1.21668 1.37052 0.92882 1.06588 0.92251 1.26018 0.96508 0.98925 0.98600 1.70092 1.47424 1.08416 1.31428 0.85476 0.79203 0.77093 0.79131 1.19152 1.20750 1.19146 1.21123 0.98631 0.94829 0.97977 1.21251 0.99997 0.94636 0.98451 0.93085 0.92129 0.92976 0.91559 0.91412 0.92457 0.92645 0.90329 0.90109 0.84482 0.85392 0.91330 0.92281 0.93177 0.83933 0.91813 0.96088 0.92780 0.93291 0.99175 0.98979 0.92761 0.85711 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.24 5.93 30.60 0.18 -1.06 16 3 C -0.11 -1.39 5.20 30.60 0.16 -1.23 16 4 C -0.08 -0.93 5.34 29.85 0.16 -0.77 16 5 C -0.09 -1.50 5.13 -19.87 -0.10 -1.60 16 6 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 7 C -0.12 -2.46 9.67 22.27 0.22 -2.24 16 8 C -0.10 -2.33 4.72 -19.87 -0.09 -2.43 16 9 C 0.12 3.13 2.82 44.17 0.12 3.25 16 10 H 0.05 1.19 7.66 -2.38 -0.02 1.18 16 11 C -0.13 -3.11 9.39 71.98 0.68 -2.43 16 12 N -0.68 -20.18 5.69 -495.42 -2.82 -23.00 16 13 C 0.07 2.61 5.48 86.31 0.47 3.08 16 14 C -0.09 -3.91 5.41 30.60 0.17 -3.75 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 20 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.11 -2.40 9.00 22.27 0.20 -2.20 16 25 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.28 8.04 -2.91 -0.02 2.26 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 40 H 0.34 9.85 7.98 -89.70 -0.72 9.13 16 41 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 42 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 43 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.12 2.90 7.71 -2.91 -0.02 2.88 16 49 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -64.55 395.31 3.80 -60.75 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.15 Total: 18.99 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 4.15 Total: -46.25 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.53 Total: -80.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.55 3.80 -60.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.131 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds