Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47130 * 2 1 4 4 C 1.53007 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46948 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99981 * 90.00206 * 5 4 3 7 7 C 1.38230 * 119.99925 * 179.97438 * 6 5 4 8 8 C 1.38236 * 119.99987 * 359.95616 * 7 6 5 9 9 C 1.50702 * 120.00097 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47294 * 19.99463 * 9 8 7 11 11 C 1.53002 * 109.47093 * 259.99753 * 9 8 7 12 12 N 1.46905 * 109.47206 * 139.99744 * 9 8 7 13 13 C 1.46901 * 110.99870 * 205.00135 * 12 9 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 9 15 15 C 1.52996 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47108 * 89.99504 * 20 18 16 22 22 H 1.48498 * 109.47097 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.46508 * 329.99366 * 20 18 16 24 24 C 1.38238 * 120.00103 * 0.27064 * 8 7 6 25 25 C 1.38233 * 119.99710 * 359.52032 * 24 8 7 26 26 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46685 * 299.99916 * 1 2 3 28 28 H 1.08999 * 109.47250 * 59.99944 * 1 2 3 29 29 H 1.08998 * 109.47028 * 239.99777 * 2 1 3 30 30 H 1.08999 * 109.47250 * 120.00056 * 2 1 3 31 31 H 1.09004 * 109.47267 * 60.00441 * 3 2 1 32 32 H 1.08999 * 109.47099 * 300.00148 * 3 2 1 33 33 H 1.09004 * 109.46922 * 60.00055 * 4 3 2 34 34 H 1.08999 * 109.47203 * 299.99911 * 4 3 2 35 35 H 1.07993 * 120.00294 * 359.96943 * 6 5 4 36 36 H 1.08001 * 120.00329 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47105 * 60.00118 * 11 9 8 38 38 H 1.08996 * 109.46950 * 179.97438 * 11 9 8 39 39 H 1.09003 * 109.46813 * 300.00004 * 11 9 8 40 40 H 1.00901 * 110.99869 * 81.04847 * 12 9 8 41 41 H 1.09004 * 109.47031 * 299.99620 * 13 12 9 42 42 H 1.08995 * 109.47111 * 59.99900 * 13 12 9 43 43 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 44 44 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 45 45 H 1.08993 * 109.47740 * 299.99810 * 15 14 13 46 46 H 1.09005 * 109.47573 * 59.99976 * 15 14 13 47 47 H 0.96999 * 120.00009 * 180.02562 * 19 18 16 48 48 H 1.07997 * 119.99876 * 179.72824 * 24 8 7 49 49 H 1.08001 * 120.00263 * 180.24995 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3033 3.5142 1.1974 7 6 4.7646 4.8172 1.1980 8 6 4.9958 5.4691 0.0011 9 6 5.4993 6.8895 0.0017 10 1 5.9516 7.1143 0.9676 11 6 4.3307 7.8449 -0.2488 12 7 6.5023 7.0540 -1.0589 13 6 7.4205 8.1579 -0.7485 14 6 8.4478 8.2985 -1.8737 15 6 9.4036 9.4486 -1.5507 16 6 10.4159 9.5867 -2.6586 17 1 10.3806 8.9210 -3.5083 18 6 11.3863 10.5635 -2.5879 19 7 12.2700 10.6837 -3.5546 20 14 11.4469 11.7155 -1.1186 21 1 12.3127 11.1283 -0.0647 22 1 12.0008 13.0271 -1.5405 23 1 10.0752 11.9067 -0.5828 24 6 4.7604 4.8198 -1.1964 25 6 4.3033 3.5152 -1.1969 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 4.1233 3.0047 2.1325 36 1 4.9447 5.3260 2.1335 37 1 3.5865 7.7229 0.5381 38 1 4.6948 8.8723 -0.2480 39 1 3.8784 7.6201 -1.2148 40 1 6.0610 7.1921 -1.9557 41 1 6.8553 9.0853 -0.6552 42 1 7.9348 7.9498 0.1896 43 1 9.0130 7.3712 -1.9674 44 1 7.9331 8.5068 -2.8116 45 1 8.8382 10.3757 -1.4571 46 1 9.9184 9.2408 -0.6126 47 1 12.9530 11.3707 -3.5047 48 1 4.9369 5.3306 -2.1314 49 1 4.1232 3.0065 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -20.076050 kcal Electronic energy + Delta-G solvation = -21792.432253 eV Core-core repulsion = 18717.383397 eV Total energy + Delta-G solvation = -3075.048856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79117 -37.35239 -35.87103 -34.11285 -32.56637 -31.52021 -30.95285 -29.64559 -28.10479 -26.23176 -24.66271 -22.94595 -22.56366 -21.73460 -21.33112 -20.41580 -19.87808 -16.84774 -16.35438 -16.10778 -15.40415 -15.24168 -15.12617 -14.43536 -14.35510 -14.21719 -13.95521 -13.50541 -13.47378 -13.17336 -13.07811 -12.94863 -12.72891 -12.44569 -12.06924 -11.97963 -11.78997 -11.66201 -11.50013 -11.40915 -11.22394 -11.00541 -10.93967 -10.79326 -10.77223 -10.71666 -9.93870 -9.71134 -9.56586 -9.14976 -8.92589 -8.54323 -8.51166 -8.20476 -6.01559 -3.99178 1.30632 1.40323 3.32212 3.39203 3.42814 3.68565 4.32247 4.43323 4.47346 4.55066 4.71015 4.76967 4.79571 4.92945 4.99598 5.00389 5.15038 5.20087 5.32322 5.35135 5.36601 5.39713 5.41120 5.48587 5.57398 5.58252 5.64880 5.69224 5.75626 5.78080 5.83585 5.89751 5.95737 6.00176 6.03374 6.09109 6.20063 6.40184 6.52283 6.56529 6.58843 6.68797 6.94318 6.98604 7.24598 7.37148 7.46403 7.57532 7.83066 8.57833 9.04093 9.61086 11.12017 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.002120 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.058391 B =13205.458691 C =13488.344647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.079 4.079 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.064 4.064 9 C 0.119 3.881 10 H 0.084 0.916 11 C -0.177 4.177 12 N -0.682 5.682 13 C 0.057 3.943 14 C -0.100 4.100 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.094 4.094 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.339 0.661 41 H 0.025 0.975 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.121 0.879 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 -17.910 9.872 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.091 4.091 6 C -0.137 4.137 7 C -0.134 4.134 8 C -0.065 4.065 9 C 0.009 3.991 10 H 0.102 0.898 11 C -0.236 4.236 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.138 4.138 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.113 4.113 25 C -0.136 4.136 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.139 0.861 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.426 -18.278 10.064 31.371 hybrid contribution -0.321 1.494 0.543 1.622 sum -23.747 -16.783 10.608 30.954 Atomic orbital electron populations 1.21777 0.95927 1.01512 1.01850 1.21556 0.95848 0.96915 1.02019 1.21605 0.94509 0.96597 1.02402 1.20598 0.95469 0.92888 1.02719 1.19809 0.99936 0.96055 0.93272 1.20907 1.00626 0.94830 0.97315 1.20963 1.00170 0.94825 0.97453 1.19809 0.97915 0.95640 0.93141 1.20465 0.91180 0.90775 0.96710 0.89815 1.22479 0.99000 0.99841 1.02243 1.60642 1.19581 1.46627 1.04352 1.22184 0.94026 0.90459 1.00459 1.21442 0.95978 1.00415 0.95922 1.19541 0.94788 0.93602 0.97142 1.21161 1.11666 1.16830 1.06014 0.91031 1.25046 0.95300 0.97248 0.96013 1.69922 1.17276 1.34368 1.32814 0.86763 0.78648 0.80426 0.83336 1.20314 1.21437 1.19112 1.20911 0.97947 0.94501 0.97905 1.20998 1.00318 0.94982 0.97344 0.92849 0.92792 0.92739 0.92001 0.92058 0.91925 0.91861 0.91144 0.91244 0.86532 0.86421 0.92160 0.92119 0.92289 0.84268 0.95671 0.91499 0.91941 0.93047 0.96870 0.97069 0.92802 0.86102 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 4 C -0.08 -0.60 5.35 -27.88 -0.15 -0.75 16 5 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 6 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 7 C -0.12 -1.25 9.67 -39.58 -0.38 -1.64 16 8 C -0.06 -0.76 4.95 -104.62 -0.52 -1.28 16 9 C 0.12 1.42 2.79 -68.86 -0.19 1.23 16 10 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 11 C -0.18 -1.85 9.14 37.16 0.34 -1.51 16 12 N -0.68 -9.57 5.71 -107.94 -0.62 -10.18 16 13 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 14 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 20 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 C -0.09 -1.09 9.32 -39.58 -0.37 -1.46 16 25 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.34 4.45 7.82 -39.29 -0.31 4.15 16 41 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 42 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 46 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 48 H 0.12 1.33 7.26 -52.49 -0.38 0.95 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -31.08 391.38 -11.22 -42.29 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -9.39 Total: -0.27 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -3.21 Total: -27.56 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.16 Total: -37.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.08 -11.22 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.217 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds