Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47130 * 2 1 4 4 C 1.53007 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46948 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99981 * 90.00206 * 5 4 3 7 7 C 1.38230 * 119.99925 * 179.97438 * 6 5 4 8 8 C 1.38236 * 119.99987 * 359.95616 * 7 6 5 9 9 C 1.50702 * 120.00097 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47294 * 19.99463 * 9 8 7 11 11 C 1.53002 * 109.47093 * 259.99753 * 9 8 7 12 12 N 1.46905 * 109.47206 * 139.99744 * 9 8 7 13 13 C 1.46901 * 110.99870 * 205.00135 * 12 9 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 9 15 15 C 1.52996 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47108 * 89.99504 * 20 18 16 22 22 H 1.48498 * 109.47097 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.46508 * 329.99366 * 20 18 16 24 24 C 1.38238 * 120.00103 * 0.27064 * 8 7 6 25 25 C 1.38233 * 119.99710 * 359.52032 * 24 8 7 26 26 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46685 * 299.99916 * 1 2 3 28 28 H 1.08999 * 109.47250 * 59.99944 * 1 2 3 29 29 H 1.08998 * 109.47028 * 239.99777 * 2 1 3 30 30 H 1.08999 * 109.47250 * 120.00056 * 2 1 3 31 31 H 1.09004 * 109.47267 * 60.00441 * 3 2 1 32 32 H 1.08999 * 109.47099 * 300.00148 * 3 2 1 33 33 H 1.09004 * 109.46922 * 60.00055 * 4 3 2 34 34 H 1.08999 * 109.47203 * 299.99911 * 4 3 2 35 35 H 1.07993 * 120.00294 * 359.96943 * 6 5 4 36 36 H 1.08001 * 120.00329 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.47105 * 60.00118 * 11 9 8 38 38 H 1.08996 * 109.46950 * 179.97438 * 11 9 8 39 39 H 1.09003 * 109.46813 * 300.00004 * 11 9 8 40 40 H 1.00901 * 110.99869 * 81.04847 * 12 9 8 41 41 H 1.09004 * 109.47031 * 299.99620 * 13 12 9 42 42 H 1.08995 * 109.47111 * 59.99900 * 13 12 9 43 43 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 44 44 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 45 45 H 1.08993 * 109.47740 * 299.99810 * 15 14 13 46 46 H 1.09005 * 109.47573 * 59.99976 * 15 14 13 47 47 H 0.96999 * 120.00009 * 180.02562 * 19 18 16 48 48 H 1.07997 * 119.99876 * 179.72824 * 24 8 7 49 49 H 1.08001 * 120.00263 * 180.24995 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3033 3.5142 1.1974 7 6 4.7646 4.8172 1.1980 8 6 4.9958 5.4691 0.0011 9 6 5.4993 6.8895 0.0017 10 1 5.9516 7.1143 0.9676 11 6 4.3307 7.8449 -0.2488 12 7 6.5023 7.0540 -1.0589 13 6 7.4205 8.1579 -0.7485 14 6 8.4478 8.2985 -1.8737 15 6 9.4036 9.4486 -1.5507 16 6 10.4159 9.5867 -2.6586 17 1 10.3806 8.9210 -3.5083 18 6 11.3863 10.5635 -2.5879 19 7 12.2700 10.6837 -3.5546 20 14 11.4469 11.7155 -1.1186 21 1 12.3127 11.1283 -0.0647 22 1 12.0008 13.0271 -1.5405 23 1 10.0752 11.9067 -0.5828 24 6 4.7604 4.8198 -1.1964 25 6 4.3033 3.5152 -1.1969 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 4.1233 3.0047 2.1325 36 1 4.9447 5.3260 2.1335 37 1 3.5865 7.7229 0.5381 38 1 4.6948 8.8723 -0.2480 39 1 3.8784 7.6201 -1.2148 40 1 6.0610 7.1921 -1.9557 41 1 6.8553 9.0853 -0.6552 42 1 7.9348 7.9498 0.1896 43 1 9.0130 7.3712 -1.9674 44 1 7.9331 8.5068 -2.8116 45 1 8.8382 10.3757 -1.4571 46 1 9.9184 9.2408 -0.6126 47 1 12.9530 11.3707 -3.5047 48 1 4.9369 5.3306 -2.1314 49 1 4.1232 3.0065 -2.1324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178641347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -35.408669 kcal Electronic energy + Delta-G solvation = -21793.097125 eV Core-core repulsion = 18717.383397 eV Total energy + Delta-G solvation = -3075.713728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59835 -38.35083 -36.64795 -35.68355 -34.13957 -32.71587 -31.74011 -30.88668 -28.82128 -27.88386 -25.39944 -24.13155 -23.62221 -22.68285 -21.97464 -21.82246 -20.96646 -18.92807 -17.38137 -16.84257 -16.48765 -16.34081 -16.03986 -15.96124 -15.30205 -15.13554 -14.91421 -14.70130 -14.50013 -14.22099 -14.11934 -13.81843 -13.66561 -13.60159 -13.43696 -13.16447 -12.70162 -12.66670 -12.55302 -12.50227 -12.21652 -12.00335 -11.94050 -11.79137 -11.67618 -11.56895 -11.44971 -11.38871 -11.36794 -11.22097 -10.76430 -9.73141 -9.41684 -9.23312 -8.29404 -6.33840 0.50222 0.59802 1.35914 1.37805 1.50012 2.36412 2.86545 3.05745 3.27028 3.79656 3.90879 3.96826 4.09686 4.17447 4.21178 4.22767 4.28955 4.34011 4.39357 4.41386 4.50945 4.62522 4.68200 4.71650 4.80105 4.81325 4.85116 4.85512 4.97985 4.98736 4.99606 5.02218 5.12549 5.15625 5.18533 5.24808 5.29160 5.32843 5.41113 5.51065 5.51824 5.59196 5.62987 5.66370 5.76831 5.81006 6.14235 6.22221 6.30041 6.47265 6.74478 7.30693 8.87600 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.002120 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.058391 B =13205.458691 C =13488.344647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.077 4.077 5 C -0.093 4.093 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.080 4.080 9 C 0.122 3.878 10 H 0.084 0.916 11 C -0.170 4.170 12 N -0.689 5.689 13 C 0.072 3.928 14 C -0.091 4.091 15 C -0.010 4.010 16 C -0.535 4.535 17 H 0.028 0.972 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.245 1.245 24 C -0.109 4.109 25 C -0.129 4.129 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.343 0.657 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.266 0.734 48 H 0.119 0.881 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.624 -18.130 12.186 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.114 4.114 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.080 4.080 9 C 0.012 3.988 10 H 0.102 0.898 11 C -0.229 4.229 12 N -0.319 5.319 13 C -0.057 4.057 14 C -0.129 4.129 15 C -0.048 4.048 16 C -0.573 4.573 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.168 1.168 24 C -0.127 4.127 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.137 0.863 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.065 -18.516 12.379 33.531 hybrid contribution 0.174 1.451 -0.272 1.487 sum -24.891 -17.065 12.107 32.517 Atomic orbital electron populations 1.21784 0.95698 1.01903 1.01764 1.21542 0.96043 0.96218 1.02356 1.21546 0.93897 0.97196 1.01955 1.20619 0.95889 0.91567 1.03313 1.20101 0.99171 0.97047 0.93009 1.21188 1.00096 0.94692 0.98231 1.21186 1.00097 0.95309 0.97666 1.19855 0.98870 0.95639 0.93650 1.20463 0.91051 0.91480 0.95764 0.89829 1.22405 0.98635 0.99096 1.02764 1.60559 1.20459 1.45594 1.05329 1.21898 0.93546 0.91773 0.98498 1.21266 0.96141 0.98058 0.97455 1.19486 0.94397 0.95476 0.95406 1.21534 1.13322 1.16142 1.06321 0.95340 1.26087 0.94672 0.99284 0.99518 1.70083 1.18319 1.35574 1.35378 0.85588 0.79897 0.77700 0.79023 1.19179 1.20907 1.16791 1.21018 0.98655 0.95149 0.97922 1.21211 1.00322 0.94840 0.98309 0.92243 0.92780 0.92952 0.91812 0.91573 0.92170 0.92509 0.90803 0.90400 0.84649 0.85145 0.91030 0.92410 0.92147 0.83813 0.94656 0.91338 0.93542 0.93457 0.96045 0.96327 0.92512 0.86318 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.23 5.93 30.59 0.18 -1.05 16 3 C -0.11 -1.30 5.20 30.60 0.16 -1.14 16 4 C -0.08 -1.02 5.35 29.85 0.16 -0.86 16 5 C -0.09 -1.69 5.13 -19.86 -0.10 -1.80 16 6 C -0.12 -2.26 9.70 22.27 0.22 -2.04 16 7 C -0.12 -2.49 9.67 22.27 0.22 -2.28 16 8 C -0.08 -1.78 4.95 -19.86 -0.10 -1.88 16 9 C 0.12 2.74 2.79 44.17 0.12 2.86 16 10 H 0.08 1.87 7.66 -2.39 -0.02 1.86 16 11 C -0.17 -3.26 9.14 71.98 0.66 -2.61 16 12 N -0.69 -18.60 5.71 -495.42 -2.83 -21.43 16 13 C 0.07 2.22 5.48 86.30 0.47 2.70 16 14 C -0.09 -3.64 5.41 30.59 0.17 -3.48 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.54 -31.85 9.66 25.60 0.25 -31.60 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 20 Si 0.96 44.89 27.47 68.60 1.88 46.77 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 24 C -0.11 -2.45 9.32 22.27 0.21 -2.24 16 25 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.13 2.19 8.04 -2.91 -0.02 2.16 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 39 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 40 H 0.34 8.76 7.82 -89.69 -0.70 8.06 16 41 H 0.04 1.03 7.44 -2.39 -0.02 1.01 16 42 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 46 H 0.02 0.85 7.57 -2.38 -0.02 0.84 16 47 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 48 H 0.12 2.60 7.26 -2.91 -0.02 2.58 16 49 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -67.26 391.38 3.59 -63.67 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.12 Total: 20.12 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 4.12 Total: -48.37 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.53 Total: -82.19 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -67.26 3.59 -63.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.262 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds