Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47236 * 120.00526 * 2 1 3 5 5 H 1.08998 * 109.46758 * 182.46057 * 4 2 1 6 6 C 1.53005 * 109.47156 * 302.45824 * 4 2 1 7 7 C 1.52995 * 109.47020 * 185.00110 * 6 4 2 8 8 C 1.50701 * 109.46899 * 180.02562 * 7 6 4 9 9 C 1.38237 * 119.99623 * 269.72706 * 8 7 6 10 10 C 1.38240 * 119.99449 * 179.76515 * 9 8 7 11 11 C 1.38238 * 120.00240 * 0.50666 * 10 9 8 12 12 C 1.38241 * 119.99703 * 359.74960 * 11 10 9 13 13 C 1.38230 * 119.99766 * 359.97438 * 12 11 10 14 14 N 1.46898 * 109.47331 * 62.46284 * 4 2 1 15 15 C 1.46896 * 111.00421 * 84.43302 * 14 4 2 16 16 C 1.52998 * 109.47134 * 177.51970 * 15 14 4 17 17 C 1.53007 * 109.46848 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.46951 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99744 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99619 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00099 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47261 * 89.99803 * 22 20 18 24 24 H 1.48492 * 109.46619 * 209.99847 * 22 20 18 25 25 H 1.48499 * 109.46776 * 329.99722 * 22 20 18 26 26 H 1.09006 * 109.46598 * 299.99579 * 1 2 3 27 27 H 1.08998 * 109.47651 * 59.99717 * 1 2 3 28 28 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46598 * 240.00421 * 2 1 3 30 30 H 1.09005 * 109.47251 * 174.25299 * 3 2 1 31 31 H 1.09003 * 109.47636 * 294.24984 * 3 2 1 32 32 H 1.08998 * 109.47621 * 54.25037 * 3 2 1 33 33 H 1.08994 * 109.46820 * 305.00465 * 6 4 2 34 34 H 1.08998 * 109.46659 * 65.00203 * 6 4 2 35 35 H 1.09003 * 109.47480 * 300.00115 * 7 6 4 36 36 H 1.08998 * 109.47328 * 60.00503 * 7 6 4 37 37 H 1.07992 * 120.00806 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.00011 * 180.23331 * 10 9 8 39 39 H 1.08001 * 120.00105 * 179.72458 * 11 10 9 40 40 H 1.08001 * 119.99404 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.99750 * 179.97438 * 13 12 11 42 42 H 1.00906 * 111.00106 * 208.39015 * 14 4 2 43 43 H 1.09005 * 109.46559 * 297.51746 * 15 14 4 44 44 H 1.09000 * 109.47280 * 57.51467 * 15 14 4 45 45 H 1.08995 * 109.47145 * 299.99361 * 16 15 14 46 46 H 1.09000 * 109.47448 * 59.99599 * 16 15 14 47 47 H 1.08995 * 109.46796 * 299.99660 * 17 16 15 48 48 H 1.09000 * 109.47353 * 59.99627 * 17 16 15 49 49 H 0.96993 * 119.99749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1291 -0.6832 1.2714 6 6 1.4801 -0.0368 2.4977 7 6 2.0876 -0.6784 3.7468 8 6 1.5356 -0.0046 4.9766 9 6 2.1837 1.0921 5.5134 10 6 1.6747 1.7131 6.6387 11 6 0.5234 1.2312 7.2331 12 6 -0.1217 0.1312 6.6992 13 6 0.3842 -0.4863 5.5707 14 7 1.5996 -2.1224 1.2197 15 6 2.5216 -2.9477 0.4280 16 6 2.0652 -4.4073 0.4717 17 6 3.0253 -5.2667 -0.3534 18 6 2.5761 -6.7046 -0.3099 19 1 1.6944 -6.9781 0.2506 20 6 3.2909 -7.6709 -0.9856 21 7 2.8986 -8.9256 -0.9480 22 14 4.8163 -7.1978 -1.9544 23 1 6.0088 -7.2847 -1.0737 24 1 4.9805 -8.1247 -3.1028 25 1 4.6723 -5.8078 -2.4568 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1252 1.4442 0.1029 31 1 1.7632 1.9258 -0.9370 32 1 1.5951 1.9852 0.8340 33 1 1.7321 1.0234 2.4746 34 1 0.3965 -0.1523 2.5203 35 1 1.8356 -1.7387 3.7698 36 1 3.1712 -0.5629 3.7242 37 1 3.0857 1.4657 5.0520 38 1 2.1789 2.5723 7.0560 39 1 0.1283 1.7137 8.1149 40 1 -1.0208 -0.2455 7.1639 41 1 -0.1196 -1.3458 5.1539 42 1 1.4976 -2.4892 2.1542 43 1 2.5257 -2.5990 -0.6048 44 1 3.5268 -2.8687 0.8421 45 1 2.0612 -4.7560 1.5044 46 1 1.0601 -4.4863 0.0576 47 1 3.0290 -4.9179 -1.3861 48 1 4.0306 -5.1878 0.0603 49 1 3.4016 -9.6053 -1.4230 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178647954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = -13.657006 kcal Electronic energy + Delta-G solvation = -22615.235393 eV Core-core repulsion = 19540.464887 eV Total energy + Delta-G solvation = -3074.770505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66913 -38.41379 -34.98143 -33.88686 -32.88193 -31.18071 -31.09357 -29.53611 -27.14908 -26.70270 -24.97929 -22.99341 -22.77653 -22.12213 -21.08417 -20.06257 -18.82251 -17.03537 -16.70756 -15.82374 -15.72216 -15.38515 -15.09384 -14.86795 -14.13327 -14.09323 -13.88008 -13.62983 -13.34140 -13.13822 -13.07925 -12.77871 -12.35884 -12.31094 -12.10003 -11.92635 -11.73143 -11.66921 -11.31717 -11.28529 -10.97750 -10.89432 -10.82096 -10.69927 -10.59359 -10.23972 -9.91888 -9.69139 -9.51756 -9.14103 -9.13497 -8.87461 -8.51064 -8.15190 -6.01474 -3.98979 1.14570 1.18684 3.32107 3.39460 3.43602 3.56729 4.33221 4.46764 4.47640 4.60703 4.76400 4.79770 4.88014 4.92738 5.01094 5.20542 5.23978 5.30479 5.32555 5.34918 5.41042 5.51437 5.52363 5.66955 5.70745 5.76131 5.78605 5.83368 5.85397 5.88735 5.93676 6.01669 6.16760 6.18597 6.23701 6.25631 6.30004 6.41179 6.45214 6.48843 6.59820 6.65829 6.80038 6.94980 7.29114 7.39729 7.47863 7.65225 7.83557 8.58044 9.04254 9.61361 11.12194 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002965 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.687126 B = 9440.765327 C =10432.626062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.149 4.149 4 C 0.091 3.909 5 H 0.040 0.960 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.074 4.074 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.116 4.116 14 N -0.684 5.684 15 C 0.057 3.943 16 C -0.099 4.099 17 C -0.013 4.013 18 C -0.518 4.518 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.338 0.662 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.015 0.985 48 H 0.008 0.992 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 24.962 12.023 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.019 4.019 5 H 0.058 0.942 6 C -0.153 4.153 7 C -0.126 4.126 8 C -0.074 4.074 9 C -0.138 4.138 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.136 4.136 13 C -0.134 4.134 14 N -0.317 5.317 15 C -0.071 4.071 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.556 4.556 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.158 0.842 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.026 0.974 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.644 24.874 11.437 27.619 hybrid contribution 1.656 0.001 0.106 1.659 sum -1.988 24.875 11.544 27.495 Atomic orbital electron populations 1.21748 0.94748 1.02788 1.00254 1.21053 0.96727 0.94743 0.97887 1.21906 1.00673 0.96551 1.01519 1.21561 0.96811 0.89145 0.94350 0.94208 1.21839 1.01565 0.99772 0.92135 1.20732 1.00266 0.99774 0.91811 1.19915 0.95266 0.95775 0.96460 1.21060 1.00097 0.96056 0.96557 1.21131 0.96529 0.99915 0.96264 1.21134 0.96206 0.97188 1.00207 1.21168 0.99913 0.96148 0.96395 1.21133 0.96029 1.00230 0.96008 1.60561 1.50879 1.01107 1.19132 1.22178 0.92687 0.94539 0.97730 1.21444 1.00605 0.91230 1.00467 1.19538 0.94563 0.95820 0.95129 1.21162 1.12783 0.90202 1.31449 0.91047 1.25046 0.97530 0.94864 0.96184 1.69920 1.40212 1.00707 1.43602 0.86767 0.83681 0.78759 0.80006 1.20400 1.21425 1.19022 0.93256 0.93946 0.91071 0.91265 0.93073 0.92858 0.92650 0.91157 0.90516 0.90654 0.91146 0.86267 0.86303 0.86354 0.86135 0.85823 0.84239 0.91586 0.95972 0.93189 0.91978 0.96665 0.97369 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.64 37.16 0.32 -1.19 16 2 C -0.08 -0.94 2.82 -90.63 -0.26 -1.19 16 3 C -0.15 -1.37 8.74 37.15 0.32 -1.05 16 4 C 0.09 1.02 1.84 -67.71 -0.12 0.90 16 5 H 0.04 0.47 7.77 -51.93 -0.40 0.07 16 6 C -0.12 -1.10 4.04 -26.73 -0.11 -1.21 16 7 C -0.09 -0.83 5.17 -27.89 -0.14 -0.98 16 8 C -0.07 -0.72 5.13 -104.62 -0.54 -1.25 16 9 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 10 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 11 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 12 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 13 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 14 N -0.68 -9.14 5.67 -106.73 -0.60 -9.74 16 15 C 0.06 0.93 5.51 -3.83 -0.02 0.90 16 16 C -0.10 -1.98 5.39 -26.73 -0.14 -2.12 16 17 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 18 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 19 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.36 13.96 55.43 0.77 -27.58 16 22 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 26 H 0.05 0.50 6.50 -51.93 -0.34 0.16 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 29 H 0.07 0.87 7.41 -51.93 -0.38 0.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.47 6.68 -51.93 -0.35 0.12 16 33 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 34 H 0.08 0.78 6.67 -51.93 -0.35 0.43 16 35 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 36 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.34 4.31 6.44 -39.29 -0.25 4.05 16 43 H 0.07 1.09 7.41 -51.93 -0.39 0.71 16 44 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -30.85 381.31 -10.88 -41.73 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.93 Total: 0.88 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -3.19 Total: -28.44 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.17 Total: -37.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.85 -10.88 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.074 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds