Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47236 * 120.00526 * 2 1 3 5 5 H 1.08998 * 109.46758 * 182.46057 * 4 2 1 6 6 C 1.53005 * 109.47156 * 302.45824 * 4 2 1 7 7 C 1.52995 * 109.47020 * 185.00110 * 6 4 2 8 8 C 1.50701 * 109.46899 * 180.02562 * 7 6 4 9 9 C 1.38237 * 119.99623 * 269.72706 * 8 7 6 10 10 C 1.38240 * 119.99449 * 179.76515 * 9 8 7 11 11 C 1.38238 * 120.00240 * 0.50666 * 10 9 8 12 12 C 1.38241 * 119.99703 * 359.74960 * 11 10 9 13 13 C 1.38230 * 119.99766 * 359.97438 * 12 11 10 14 14 N 1.46898 * 109.47331 * 62.46284 * 4 2 1 15 15 C 1.46896 * 111.00421 * 84.43302 * 14 4 2 16 16 C 1.52998 * 109.47134 * 177.51970 * 15 14 4 17 17 C 1.53007 * 109.46848 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.46951 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99744 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99619 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00099 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47261 * 89.99803 * 22 20 18 24 24 H 1.48492 * 109.46619 * 209.99847 * 22 20 18 25 25 H 1.48499 * 109.46776 * 329.99722 * 22 20 18 26 26 H 1.09006 * 109.46598 * 299.99579 * 1 2 3 27 27 H 1.08998 * 109.47651 * 59.99717 * 1 2 3 28 28 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46598 * 240.00421 * 2 1 3 30 30 H 1.09005 * 109.47251 * 174.25299 * 3 2 1 31 31 H 1.09003 * 109.47636 * 294.24984 * 3 2 1 32 32 H 1.08998 * 109.47621 * 54.25037 * 3 2 1 33 33 H 1.08994 * 109.46820 * 305.00465 * 6 4 2 34 34 H 1.08998 * 109.46659 * 65.00203 * 6 4 2 35 35 H 1.09003 * 109.47480 * 300.00115 * 7 6 4 36 36 H 1.08998 * 109.47328 * 60.00503 * 7 6 4 37 37 H 1.07992 * 120.00806 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.00011 * 180.23331 * 10 9 8 39 39 H 1.08001 * 120.00105 * 179.72458 * 11 10 9 40 40 H 1.08001 * 119.99404 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.99750 * 179.97438 * 13 12 11 42 42 H 1.00906 * 111.00106 * 208.39015 * 14 4 2 43 43 H 1.09005 * 109.46559 * 297.51746 * 15 14 4 44 44 H 1.09000 * 109.47280 * 57.51467 * 15 14 4 45 45 H 1.08995 * 109.47145 * 299.99361 * 16 15 14 46 46 H 1.09000 * 109.47448 * 59.99599 * 16 15 14 47 47 H 1.08995 * 109.46796 * 299.99660 * 17 16 15 48 48 H 1.09000 * 109.47353 * 59.99627 * 17 16 15 49 49 H 0.96993 * 119.99749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1291 -0.6832 1.2714 6 6 1.4801 -0.0368 2.4977 7 6 2.0876 -0.6784 3.7468 8 6 1.5356 -0.0046 4.9766 9 6 2.1837 1.0921 5.5134 10 6 1.6747 1.7131 6.6387 11 6 0.5234 1.2312 7.2331 12 6 -0.1217 0.1312 6.6992 13 6 0.3842 -0.4863 5.5707 14 7 1.5996 -2.1224 1.2197 15 6 2.5216 -2.9477 0.4280 16 6 2.0652 -4.4073 0.4717 17 6 3.0253 -5.2667 -0.3534 18 6 2.5761 -6.7046 -0.3099 19 1 1.6944 -6.9781 0.2506 20 6 3.2909 -7.6709 -0.9856 21 7 2.8986 -8.9256 -0.9480 22 14 4.8163 -7.1978 -1.9544 23 1 6.0088 -7.2847 -1.0737 24 1 4.9805 -8.1247 -3.1028 25 1 4.6723 -5.8078 -2.4568 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1252 1.4442 0.1029 31 1 1.7632 1.9258 -0.9370 32 1 1.5951 1.9852 0.8340 33 1 1.7321 1.0234 2.4746 34 1 0.3965 -0.1523 2.5203 35 1 1.8356 -1.7387 3.7698 36 1 3.1712 -0.5629 3.7242 37 1 3.0857 1.4657 5.0520 38 1 2.1789 2.5723 7.0560 39 1 0.1283 1.7137 8.1149 40 1 -1.0208 -0.2455 7.1639 41 1 -0.1196 -1.3458 5.1539 42 1 1.4976 -2.4892 2.1542 43 1 2.5257 -2.5990 -0.6048 44 1 3.5268 -2.8687 0.8421 45 1 2.0612 -4.7560 1.5044 46 1 1.0601 -4.4863 0.0576 47 1 3.0290 -4.9179 -1.3861 48 1 4.0306 -5.1878 0.0603 49 1 3.4016 -9.6053 -1.4230 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178647954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = -29.072295 kcal Electronic energy + Delta-G solvation = -22615.903850 eV Core-core repulsion = 19540.464887 eV Total energy + Delta-G solvation = -3075.438962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37979 -39.30768 -36.50841 -34.74557 -34.60099 -32.78729 -31.73012 -30.51388 -28.31844 -27.87000 -26.08369 -23.83463 -23.76728 -23.40538 -21.86028 -21.71143 -19.73142 -18.90925 -17.67658 -16.86841 -16.65649 -16.26881 -16.18886 -15.98340 -15.65977 -15.34769 -14.84149 -14.68812 -14.33417 -14.15008 -13.99517 -13.85874 -13.74010 -13.55201 -13.18516 -13.01798 -12.80502 -12.66502 -12.62836 -12.44350 -11.98241 -11.97706 -11.83518 -11.75566 -11.68840 -11.59314 -11.39788 -11.36574 -11.18851 -11.02925 -10.76669 -9.78810 -9.54952 -9.24118 -8.29740 -6.33900 0.48752 0.53330 1.34951 1.37383 1.49697 2.36066 2.90914 3.05472 3.25827 3.70904 3.90582 3.96801 4.09102 4.20304 4.24912 4.27974 4.32688 4.35554 4.39546 4.48558 4.58577 4.64064 4.68544 4.69768 4.76320 4.78612 4.87589 4.90999 4.93609 5.02284 5.07658 5.12961 5.14451 5.18265 5.20303 5.26120 5.36032 5.38068 5.51919 5.56067 5.61444 5.61888 5.62895 5.66329 5.66813 5.77601 6.16832 6.20512 6.30727 6.57230 6.74495 7.30681 8.87379 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002965 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.687126 B = 9440.765327 C =10432.626062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.094 3.906 5 H 0.040 0.960 6 C -0.103 4.103 7 C -0.084 4.084 8 C -0.086 4.086 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.136 4.136 12 C -0.128 4.128 13 C -0.134 4.134 14 N -0.687 5.687 15 C 0.072 3.928 16 C -0.090 4.090 17 C -0.009 4.009 18 C -0.533 4.533 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.953 5.953 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.246 1.246 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.341 0.659 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 27.760 12.252 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.016 4.016 5 H 0.058 0.942 6 C -0.141 4.141 7 C -0.121 4.121 8 C -0.086 4.086 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.146 4.146 13 C -0.152 4.152 14 N -0.320 5.320 15 C -0.057 4.057 16 C -0.128 4.128 17 C -0.047 4.047 18 C -0.571 4.571 19 H 0.048 0.952 20 C -0.196 4.196 21 N -0.594 5.594 22 Si 0.777 3.223 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.170 1.170 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.162 0.838 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.311 27.695 11.680 30.146 hybrid contribution 1.126 -0.902 0.117 1.447 sum -1.185 26.793 11.797 29.299 Atomic orbital electron populations 1.21695 0.94798 1.01593 1.01024 1.21061 0.96661 0.95875 0.96925 1.21856 1.00919 0.95090 1.02253 1.21605 0.96845 0.87735 0.95394 0.94217 1.21723 1.00998 1.00127 0.91247 1.20665 1.00360 0.99250 0.91835 1.19984 0.95583 0.96338 0.96734 1.21282 1.00568 0.95962 0.96956 1.21447 0.96581 1.00399 0.95985 1.21452 0.96151 0.96969 1.00774 1.21424 1.00543 0.96409 0.96260 1.21286 0.96475 1.00679 0.96720 1.60503 1.50249 1.02032 1.19206 1.21884 0.93254 0.92224 0.98328 1.21263 0.98927 0.93358 0.99268 1.19483 0.95760 0.93382 0.96108 1.21527 1.11595 0.93155 1.30839 0.95243 1.26076 1.01446 0.94592 0.97439 1.70078 1.42165 1.02161 1.45003 0.85603 0.78954 0.79348 0.78407 1.19058 1.20933 1.16960 0.92325 0.93349 0.93204 0.92979 0.92667 0.92349 0.91674 0.90004 0.91115 0.91497 0.90863 0.85087 0.84275 0.84351 0.84784 0.85890 0.83833 0.91705 0.95335 0.93568 0.93377 0.96326 0.96417 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.64 71.98 0.62 -2.16 16 2 C -0.09 -1.77 2.82 -10.80 -0.03 -1.80 16 3 C -0.14 -2.30 8.74 71.98 0.63 -1.67 16 4 C 0.09 1.96 1.84 44.92 0.08 2.04 16 5 H 0.04 0.86 7.77 -2.39 -0.02 0.84 16 6 C -0.10 -1.80 4.04 30.59 0.12 -1.68 16 7 C -0.08 -1.48 5.17 29.85 0.15 -1.32 16 8 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 9 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 10 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 11 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 12 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 13 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 14 N -0.69 -17.80 5.67 -491.58 -2.79 -20.59 16 15 C 0.07 2.25 5.51 86.30 0.48 2.73 16 16 C -0.09 -3.59 5.39 30.60 0.16 -3.42 16 17 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 18 C -0.53 -31.70 9.66 25.60 0.25 -31.46 16 19 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 20 C 0.00 0.05 5.47 84.66 0.46 0.51 16 21 N -0.95 -61.15 13.96 21.45 0.30 -60.86 16 22 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 26 H 0.06 1.09 6.50 -2.38 -0.02 1.08 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 29 H 0.05 1.25 7.41 -2.38 -0.02 1.24 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.92 6.68 -2.39 -0.02 0.90 16 33 H 0.08 1.27 6.38 -2.39 -0.02 1.25 16 34 H 0.07 1.34 6.67 -2.39 -0.02 1.33 16 35 H 0.07 1.28 6.37 -2.39 -0.02 1.27 16 36 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.34 8.51 6.44 -89.69 -0.58 7.93 16 43 H 0.06 2.05 7.41 -2.38 -0.02 2.04 16 44 H 0.03 0.86 8.00 -2.39 -0.02 0.84 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 48 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 49 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -67.17 381.31 3.71 -63.46 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.25 Total: 20.73 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 4.05 Total: -49.71 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.49 Total: -81.45 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -67.17 3.71 -63.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds