Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47325 * 2 1 4 4 C 1.52999 * 109.46914 * 239.99400 * 2 1 3 5 5 H 1.09002 * 109.47353 * 175.84929 * 4 2 1 6 6 C 1.53001 * 109.46978 * 55.85474 * 4 2 1 7 7 C 1.53001 * 109.47338 * 174.99859 * 6 4 2 8 8 C 1.50694 * 109.47230 * 179.97438 * 7 6 4 9 9 C 1.38240 * 120.00009 * 269.72853 * 8 7 6 10 10 C 1.38238 * 119.99563 * 179.76760 * 9 8 7 11 11 C 1.38233 * 120.00204 * 0.50438 * 10 9 8 12 12 C 1.38238 * 120.00052 * 359.74675 * 11 10 9 13 13 C 1.38233 * 119.99895 * 90.00049 * 8 7 6 14 14 N 1.46899 * 109.47298 * 295.85218 * 4 2 1 15 15 C 1.46896 * 111.00241 * 273.12214 * 14 4 2 16 16 C 1.52997 * 109.47553 * 174.60477 * 15 14 4 17 17 C 1.53000 * 109.47191 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46949 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99805 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00325 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47540 * 89.99788 * 22 20 18 24 24 H 1.48499 * 109.47197 * 210.00136 * 22 20 18 25 25 H 1.48508 * 109.47039 * 329.99718 * 22 20 18 26 26 H 1.08994 * 109.47167 * 60.00170 * 1 2 3 27 27 H 1.09002 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47157 * 300.00387 * 1 2 3 29 29 H 1.09007 * 109.46997 * 120.00048 * 2 1 3 30 30 H 1.08992 * 109.47638 * 65.92787 * 3 2 1 31 31 H 1.09003 * 109.46727 * 185.93265 * 3 2 1 32 32 H 1.08999 * 109.46703 * 305.92425 * 3 2 1 33 33 H 1.09009 * 109.46993 * 294.99799 * 6 4 2 34 34 H 1.09002 * 109.47526 * 54.99343 * 6 4 2 35 35 H 1.09000 * 109.46780 * 299.99854 * 7 6 4 36 36 H 1.09001 * 109.46826 * 59.99657 * 7 6 4 37 37 H 1.07995 * 119.99936 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.99845 * 180.22987 * 10 9 8 39 39 H 1.07997 * 120.00235 * 179.72624 * 11 10 9 40 40 H 1.07995 * 120.00234 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.00219 * 359.97438 * 13 8 7 42 42 H 1.00902 * 111.00024 * 149.16896 * 14 4 2 43 43 H 1.09001 * 109.47082 * 294.60871 * 15 14 4 44 44 H 1.09005 * 109.46737 * 54.59931 * 15 14 4 45 45 H 1.09000 * 109.46706 * 299.99753 * 16 15 14 46 46 H 1.08993 * 109.47230 * 60.00069 * 16 15 14 47 47 H 1.08999 * 109.47275 * 299.99659 * 17 16 15 48 48 H 1.09001 * 109.47472 * 59.99816 * 17 16 15 49 49 H 0.97008 * 119.99976 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 1 3.1274 -0.6575 -1.2872 6 6 1.4465 -0.0629 -2.4963 7 6 2.0518 -0.7022 -3.7476 8 6 1.4669 -0.0541 -4.9759 9 6 0.3227 -0.5728 -5.5527 10 6 -0.2166 0.0246 -6.6766 11 6 0.3942 1.1345 -7.2298 12 6 1.5414 1.6500 -6.6561 13 6 2.0777 1.0557 -5.5291 14 7 1.6337 -2.1323 -1.2000 15 6 2.6163 -2.9376 -0.4625 16 6 2.0960 -4.3690 -0.3164 17 6 3.1192 -5.2075 0.4523 18 6 2.6064 -6.6173 0.5967 19 1 1.6470 -6.8880 0.1814 20 6 3.3626 -7.5615 1.2581 21 7 2.9153 -8.7918 1.3838 22 14 5.0224 -7.0933 1.9758 23 1 4.8426 -6.6207 3.3721 24 1 5.9181 -8.2777 1.9656 25 1 5.6264 -6.0091 1.1602 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7660 1.9248 0.9382 31 1 3.1248 1.4442 -0.1062 32 1 1.5926 1.9859 -0.8322 33 1 0.3657 -0.2046 -2.5025 34 1 1.6731 1.0032 -2.4870 35 1 3.1326 -0.5606 -3.7413 36 1 1.8251 -1.7684 -3.7568 37 1 -0.1518 -1.4428 -5.1233 38 1 -1.1126 -0.3783 -7.1251 39 1 -0.0246 1.5986 -8.1105 40 1 2.0188 2.5168 -7.0885 41 1 2.9739 1.4586 -5.0808 42 1 1.4892 -2.4995 -2.1286 43 1 3.5602 -2.9479 -1.0077 44 1 2.7723 -2.5049 0.5257 45 1 1.1522 -4.3585 0.2288 46 1 1.9401 -4.8015 -1.3046 47 1 4.0632 -5.2180 -0.0925 48 1 3.2748 -4.7748 1.4405 49 1 3.4472 -9.4561 1.8495 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178647964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = -13.610672 kcal Electronic energy + Delta-G solvation = -22608.460455 eV Core-core repulsion = 19533.691959 eV Total energy + Delta-G solvation = -3074.768496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.67675 -38.40997 -34.96800 -33.89266 -32.88347 -31.18585 -31.10156 -29.53133 -27.15096 -26.70360 -24.99103 -22.99357 -22.78603 -22.10422 -21.09067 -20.04115 -18.82420 -17.04324 -16.70276 -15.86321 -15.73632 -15.41556 -15.05790 -14.87699 -14.14240 -14.02990 -13.86878 -13.64240 -13.34948 -13.14573 -13.08529 -12.78227 -12.35744 -12.33214 -12.12450 -11.91560 -11.75101 -11.57252 -11.33251 -11.29081 -11.01589 -10.88948 -10.82197 -10.68249 -10.60137 -10.26431 -9.89644 -9.68100 -9.51208 -9.14341 -9.13426 -8.88386 -8.50556 -8.14309 -6.00955 -3.98391 1.13743 1.17851 3.32601 3.39650 3.43479 3.55895 4.32724 4.46001 4.47993 4.59814 4.75842 4.80031 4.87481 4.92136 5.00403 5.20737 5.23657 5.29985 5.33042 5.34115 5.40290 5.50535 5.51859 5.66920 5.69618 5.75639 5.78962 5.82900 5.86078 5.88887 5.93391 6.01433 6.16762 6.19264 6.24597 6.24954 6.29226 6.41694 6.44293 6.48888 6.60729 6.65884 6.79210 6.97132 7.29730 7.40444 7.48676 7.65794 7.84188 8.58770 9.04929 9.61918 11.12694 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.002937 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.686150 B = 9532.672077 C =10449.785860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.149 4.149 4 C 0.091 3.909 5 H 0.041 0.959 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.074 4.074 9 C -0.116 4.116 10 C -0.118 4.118 11 C -0.129 4.129 12 C -0.120 4.120 13 C -0.120 4.120 14 N -0.684 5.684 15 C 0.057 3.943 16 C -0.097 4.097 17 C -0.013 4.013 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.337 0.663 43 H 0.022 0.978 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 24.534 -13.370 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.018 4.018 5 H 0.059 0.941 6 C -0.154 4.154 7 C -0.126 4.126 8 C -0.074 4.074 9 C -0.134 4.134 10 C -0.136 4.136 11 C -0.147 4.147 12 C -0.138 4.138 13 C -0.138 4.138 14 N -0.317 5.317 15 C -0.071 4.071 16 C -0.135 4.135 17 C -0.051 4.051 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.708 3.292 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.742 24.438 -12.757 27.820 hybrid contribution 1.667 0.033 -0.230 1.683 sum -2.075 24.471 -12.987 27.781 Atomic orbital electron populations 1.21754 0.94797 1.02751 1.00279 1.21057 0.96683 0.94696 0.97958 1.21903 1.00668 0.96566 1.01507 1.21554 0.96967 0.89045 0.94283 0.94125 1.21859 1.01476 0.99927 0.92137 1.20731 1.00076 0.99941 0.91829 1.19914 0.95408 0.95650 0.96457 1.21137 0.95912 1.00216 0.96145 1.21168 0.99909 0.96188 0.96355 1.21132 0.96354 0.97023 1.00216 1.21130 0.96434 0.99945 0.96321 1.21059 1.00163 0.96095 0.96448 1.60533 1.48143 1.01120 1.21875 1.22171 0.92185 0.95027 0.97739 1.21411 1.00127 0.91465 1.00528 1.19545 0.94825 0.95802 0.94927 1.21162 1.06019 0.92634 1.35728 0.91040 1.25045 0.97942 0.94867 0.95783 1.69924 1.38395 1.02810 1.43330 0.86768 0.84498 0.78068 0.79861 1.20323 1.21464 1.19105 0.93265 0.91114 0.93905 0.91179 0.92843 0.93075 0.92701 0.90497 0.91164 0.91148 0.90688 0.85828 0.86132 0.86349 0.86296 0.86266 0.84288 0.95986 0.91645 0.92035 0.93149 0.96944 0.97152 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.61 37.16 0.32 -1.20 16 2 C -0.08 -0.94 2.84 -90.62 -0.26 -1.20 16 3 C -0.15 -1.37 8.78 37.16 0.33 -1.05 16 4 C 0.09 1.02 1.82 -67.71 -0.12 0.90 16 5 H 0.04 0.48 7.83 -51.93 -0.41 0.07 16 6 C -0.12 -1.10 3.99 -26.73 -0.11 -1.21 16 7 C -0.09 -0.82 5.18 -27.89 -0.14 -0.97 16 8 C -0.07 -0.71 5.13 -104.63 -0.54 -1.25 16 9 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 10 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 12 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 13 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 14 N -0.68 -9.13 5.70 -106.73 -0.61 -9.74 16 15 C 0.06 0.93 5.45 -3.83 -0.02 0.91 16 16 C -0.10 -1.94 5.46 -26.73 -0.15 -2.09 16 17 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 18 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 19 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 22 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.05 0.49 6.47 -51.93 -0.34 0.16 16 27 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.89 7.44 -51.93 -0.39 0.51 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.47 6.73 -51.93 -0.35 0.12 16 33 H 0.08 0.78 6.66 -51.92 -0.35 0.43 16 34 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.07 0.73 6.38 -51.93 -0.33 0.40 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.34 4.26 6.52 -39.29 -0.26 4.01 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 1.07 7.41 -51.93 -0.38 0.69 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 48 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -30.92 381.76 -10.90 -41.82 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.96 Total: 0.74 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -3.19 Total: -28.38 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.16 Total: -37.35 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.92 -10.90 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.207 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds