Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47325 * 2 1 4 4 C 1.52999 * 109.46914 * 239.99400 * 2 1 3 5 5 H 1.09002 * 109.47353 * 175.84929 * 4 2 1 6 6 C 1.53001 * 109.46978 * 55.85474 * 4 2 1 7 7 C 1.53001 * 109.47338 * 174.99859 * 6 4 2 8 8 C 1.50694 * 109.47230 * 179.97438 * 7 6 4 9 9 C 1.38240 * 120.00009 * 269.72853 * 8 7 6 10 10 C 1.38238 * 119.99563 * 179.76760 * 9 8 7 11 11 C 1.38233 * 120.00204 * 0.50438 * 10 9 8 12 12 C 1.38238 * 120.00052 * 359.74675 * 11 10 9 13 13 C 1.38233 * 119.99895 * 90.00049 * 8 7 6 14 14 N 1.46899 * 109.47298 * 295.85218 * 4 2 1 15 15 C 1.46896 * 111.00241 * 273.12214 * 14 4 2 16 16 C 1.52997 * 109.47553 * 174.60477 * 15 14 4 17 17 C 1.53000 * 109.47191 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46949 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99805 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00325 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47540 * 89.99788 * 22 20 18 24 24 H 1.48499 * 109.47197 * 210.00136 * 22 20 18 25 25 H 1.48508 * 109.47039 * 329.99718 * 22 20 18 26 26 H 1.08994 * 109.47167 * 60.00170 * 1 2 3 27 27 H 1.09002 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47157 * 300.00387 * 1 2 3 29 29 H 1.09007 * 109.46997 * 120.00048 * 2 1 3 30 30 H 1.08992 * 109.47638 * 65.92787 * 3 2 1 31 31 H 1.09003 * 109.46727 * 185.93265 * 3 2 1 32 32 H 1.08999 * 109.46703 * 305.92425 * 3 2 1 33 33 H 1.09009 * 109.46993 * 294.99799 * 6 4 2 34 34 H 1.09002 * 109.47526 * 54.99343 * 6 4 2 35 35 H 1.09000 * 109.46780 * 299.99854 * 7 6 4 36 36 H 1.09001 * 109.46826 * 59.99657 * 7 6 4 37 37 H 1.07995 * 119.99936 * 359.97438 * 9 8 7 38 38 H 1.07997 * 119.99845 * 180.22987 * 10 9 8 39 39 H 1.07997 * 120.00235 * 179.72624 * 11 10 9 40 40 H 1.07995 * 120.00234 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.00219 * 359.97438 * 13 8 7 42 42 H 1.00902 * 111.00024 * 149.16896 * 14 4 2 43 43 H 1.09001 * 109.47082 * 294.60871 * 15 14 4 44 44 H 1.09005 * 109.46737 * 54.59931 * 15 14 4 45 45 H 1.09000 * 109.46706 * 299.99753 * 16 15 14 46 46 H 1.08993 * 109.47230 * 60.00069 * 16 15 14 47 47 H 1.08999 * 109.47275 * 299.99659 * 17 16 15 48 48 H 1.09001 * 109.47472 * 59.99816 * 17 16 15 49 49 H 0.97008 * 119.99976 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 1 3.1274 -0.6575 -1.2872 6 6 1.4465 -0.0629 -2.4963 7 6 2.0518 -0.7022 -3.7476 8 6 1.4669 -0.0541 -4.9759 9 6 0.3227 -0.5728 -5.5527 10 6 -0.2166 0.0246 -6.6766 11 6 0.3942 1.1345 -7.2298 12 6 1.5414 1.6500 -6.6561 13 6 2.0777 1.0557 -5.5291 14 7 1.6337 -2.1323 -1.2000 15 6 2.6163 -2.9376 -0.4625 16 6 2.0960 -4.3690 -0.3164 17 6 3.1192 -5.2075 0.4523 18 6 2.6064 -6.6173 0.5967 19 1 1.6470 -6.8880 0.1814 20 6 3.3626 -7.5615 1.2581 21 7 2.9153 -8.7918 1.3838 22 14 5.0224 -7.0933 1.9758 23 1 4.8426 -6.6207 3.3721 24 1 5.9181 -8.2777 1.9656 25 1 5.6264 -6.0091 1.1602 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7660 1.9248 0.9382 31 1 3.1248 1.4442 -0.1062 32 1 1.5926 1.9859 -0.8322 33 1 0.3657 -0.2046 -2.5025 34 1 1.6731 1.0032 -2.4870 35 1 3.1326 -0.5606 -3.7413 36 1 1.8251 -1.7684 -3.7568 37 1 -0.1518 -1.4428 -5.1233 38 1 -1.1126 -0.3783 -7.1251 39 1 -0.0246 1.5986 -8.1105 40 1 2.0188 2.5168 -7.0885 41 1 2.9739 1.4586 -5.0808 42 1 1.4892 -2.4995 -2.1286 43 1 3.5602 -2.9479 -1.0077 44 1 2.7723 -2.5049 0.5257 45 1 1.1522 -4.3585 0.2288 46 1 1.9401 -4.8015 -1.3046 47 1 4.0632 -5.2180 -0.0925 48 1 3.2748 -4.7748 1.4405 49 1 3.4472 -9.4561 1.8495 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178647964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = -29.115757 kcal Electronic energy + Delta-G solvation = -22609.132806 eV Core-core repulsion = 19533.691959 eV Total energy + Delta-G solvation = -3075.440847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38010 -39.30070 -36.49869 -34.74916 -34.59724 -32.79703 -31.73051 -30.50542 -28.31365 -27.88130 -26.09235 -23.84124 -23.74626 -23.40536 -21.84893 -21.70281 -19.73380 -18.90543 -17.67956 -16.92601 -16.66074 -16.26880 -16.18965 -15.93436 -15.66275 -15.30308 -14.84399 -14.69215 -14.33968 -14.16776 -14.00243 -13.90113 -13.74217 -13.47968 -13.17362 -13.02007 -12.79060 -12.66470 -12.61999 -12.48796 -11.98536 -11.96888 -11.80605 -11.74910 -11.71842 -11.57219 -11.42263 -11.34619 -11.18931 -11.03683 -10.76496 -9.78850 -9.55150 -9.23002 -8.29508 -6.33662 0.48672 0.53261 1.35366 1.37256 1.49488 2.36171 2.90831 3.05682 3.25568 3.70882 3.91001 3.96871 4.09153 4.20289 4.24348 4.27886 4.32750 4.35955 4.41550 4.48627 4.58207 4.64319 4.68441 4.70962 4.76368 4.78180 4.87848 4.91359 4.93745 5.00667 5.08073 5.13207 5.14710 5.18325 5.20178 5.25858 5.36305 5.38197 5.52549 5.56038 5.61278 5.61805 5.63722 5.66307 5.67139 5.77448 6.16772 6.20888 6.31201 6.58291 6.74772 7.30888 8.87604 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.002937 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.686150 B = 9532.672077 C =10449.785860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.143 4.143 4 C 0.094 3.906 5 H 0.041 0.959 6 C -0.104 4.104 7 C -0.083 4.083 8 C -0.086 4.086 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.136 4.136 12 C -0.126 4.126 13 C -0.130 4.130 14 N -0.688 5.688 15 C 0.072 3.928 16 C -0.088 4.088 17 C -0.010 4.010 18 C -0.533 4.533 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.953 5.953 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.246 1.246 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.342 0.658 43 H 0.029 0.971 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.019 0.981 48 H 0.017 0.983 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 27.301 -13.910 30.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.015 4.015 5 H 0.059 0.941 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.086 4.086 9 C -0.152 4.152 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.144 4.144 13 C -0.148 4.148 14 N -0.321 5.321 15 C -0.057 4.057 16 C -0.126 4.126 17 C -0.048 4.048 18 C -0.571 4.571 19 H 0.047 0.953 20 C -0.196 4.196 21 N -0.594 5.594 22 Si 0.777 3.223 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.169 1.169 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.306 27.227 -13.311 30.395 hybrid contribution 1.092 -0.861 -0.124 1.396 sum -1.214 26.367 -13.435 29.617 Atomic orbital electron populations 1.21702 0.94837 1.01555 1.01061 1.21064 0.96630 0.95834 0.96993 1.21852 1.00916 0.95100 1.02238 1.21592 0.97076 0.87571 0.95286 0.94079 1.21741 1.00881 1.00305 0.91260 1.20664 1.00184 0.99432 0.91808 1.19984 0.95712 0.96206 0.96739 1.21292 0.96367 1.00653 0.96844 1.21424 1.00512 0.96478 0.96226 1.21449 0.96330 0.96797 1.00774 1.21444 0.96449 1.00457 0.96067 1.21282 1.00645 0.96006 0.96830 1.60459 1.47401 1.02126 1.22083 1.21873 0.92683 0.92742 0.98396 1.21232 0.98472 0.93596 0.99315 1.19490 0.95868 0.93473 0.95936 1.21526 1.04682 0.95478 1.35402 0.95283 1.26077 1.02692 0.94586 0.96221 1.70083 1.40480 1.04270 1.44593 0.85599 0.78754 0.78430 0.79491 1.19131 1.20914 1.16913 0.92247 0.93257 0.93369 0.93025 0.92383 0.92669 0.91671 0.91097 0.90027 0.90847 0.91475 0.85865 0.84788 0.84364 0.84286 0.85087 0.83807 0.95326 0.91631 0.93488 0.93656 0.96284 0.96465 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.61 71.98 0.62 -2.18 16 2 C -0.09 -1.78 2.84 -10.80 -0.03 -1.81 16 3 C -0.14 -2.31 8.78 71.98 0.63 -1.68 16 4 C 0.09 1.96 1.82 44.92 0.08 2.04 16 5 H 0.04 0.88 7.83 -2.39 -0.02 0.86 16 6 C -0.10 -1.80 3.99 30.59 0.12 -1.68 16 7 C -0.08 -1.45 5.18 29.85 0.15 -1.30 16 8 C -0.09 -1.56 5.13 -19.87 -0.10 -1.66 16 9 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 10 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 11 C -0.14 -1.98 10.05 22.27 0.22 -1.76 16 12 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 13 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 14 N -0.69 -17.79 5.70 -491.58 -2.80 -20.60 16 15 C 0.07 2.25 5.45 86.30 0.47 2.72 16 16 C -0.09 -3.52 5.46 30.59 0.17 -3.36 16 17 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 18 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 19 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 20 C 0.00 0.03 5.47 84.65 0.46 0.50 16 21 N -0.95 -61.24 13.96 21.44 0.30 -60.94 16 22 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 26 H 0.06 1.10 6.47 -2.39 -0.02 1.09 16 27 H 0.05 1.23 7.73 -2.39 -0.02 1.22 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 1.26 7.44 -2.38 -0.02 1.24 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.92 6.73 -2.39 -0.02 0.90 16 33 H 0.07 1.33 6.66 -2.38 -0.02 1.32 16 34 H 0.08 1.25 6.44 -2.39 -0.02 1.24 16 35 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 36 H 0.07 1.26 6.38 -2.39 -0.02 1.25 16 37 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.34 8.42 6.52 -89.69 -0.58 7.83 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 2.06 7.41 -2.38 -0.02 2.04 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 48 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 49 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -67.39 381.76 3.68 -63.71 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.25 Total: 20.43 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 4.05 Total: -49.60 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.50 Total: -81.54 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -67.39 3.68 -63.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178647964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.597 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds